Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
V3.Lp_scaffold_3375G4 Lolium perenne HOM05M002654 ORTHO05M003266 7.6e-107 389.8 206 100.0
GWHGASIY025108 Secale cereale HOM05M002654 ORTHO05M003266 2.1e-96 355.1 201 92.5
Horvu_MOREX_5H01G178900 Hordeum vulgare HOM05M002654 ORTHO05M003266 3.5e-96 354.4 201 92.0
AET5Gv20279000 Aegilops tauschii HOM05M002654 ORTHO05M003266 4.6e-96 354.0 201 92.0
TraesCS5A03G0306300 Triticum aestivum HOM05M002654 ORTHO05M003266 4.6e-96 354.0 201 92.5
TraesCS5D03G0278100 Triticum aestivum HOM05M002654 ORTHO05M003266 4.6e-96 354.0 201 92.0
TRIDC5AG018000 Triticum dicoccoides HOM05M002654 ORTHO05M003266 4.6e-96 354.0 201 92.5
Bradi4g08120 Brachypodium distachyon HOM05M002654 ORTHO05M003266 2.5e-94 348.2 201 90.5
PH02Gene22658 Phyllostachys edulis HOM05M002654 ORTHO05M003266 2.4e-92 341.7 201 88.1
Pahal.9G492600 Panicum hallii HOM05M002654 ORTHO05M003266 1.2e-91 339.3 201 86.1
Sspon.02G0005870-3C Saccharum spontaneum HOM05M002654 ORTHO05M003266 1.2e-91 339.3 201 87.6
OB01G26790 Oryza brachyantha HOM05M002654 ORTHO05M003266 7.6e-91 336.7 201 87.1
Sobic.002G333100 Sorghum bicolor HOM05M002654 ORTHO05M003266 1.0e-90 336.3 201 87.1
GWHGAZTO055332 Oryza alta HOM05M002654 ORTHO05M003266 1.3e-90 335.9 201 87.1
OsKitaake01g182600 Oryza sativa Kitaake HOM05M002654 ORTHO05M003266 1.3e-90 335.9 201 87.1
OsR498G0101081900.01 Oryza sativa ssp. indica HOM05M002654 ORTHO05M003266 1.3e-90 335.9 201 87.1
Os01g0507300 Oryza sativa ssp. japonica HOM05M002654 ORTHO05M003266 1.3e-90 335.9 201 87.1
GWHGAORA038021 Cenchrus purpureus HOM05M002654 ORTHO05M003266 8.4e-90 333.2 201 84.1
GWHGAZTO002931 Oryza alta HOM05M002654 ORTHO05M003266 1.4e-89 332.4 201 86.6
Zm00001eb106640 Zea mays B73 HOM05M002654 ORTHO05M003266 1.9e-89 332.0 201 85.6
Misin03G290600 Miscanthus sinensis HOM05M002654 ORTHO05M003266 3.2e-89 331.3 201 86.1
Seita.3G233700 Setaria italica HOM05M002654 ORTHO05M003266 2.1e-88 328.6 201 82.6
Sevir.3G239100 Setaria viridis HOM05M002654 ORTHO05M003266 2.1e-88 328.6 201 82.6
GWHGAORA003068 Cenchrus purpureus HOM05M002654 ORTHO05M003266 7.9e-88 326.6 201 81.6
Sspon.02G0005870-1A Saccharum spontaneum HOM05M002654 ORTHO05M003266 3.3e-86 321.2 202 84.2
Sspon.02G0005870-2B Saccharum spontaneum HOM05M002654 ORTHO05M003266 3.7e-85 317.8 216 79.2
Zm00007a00009986 Zea mays B104 HOM05M002654 ORTHO05M003266 5.3e-84 313.9 195 84.6
TRITD5Bv1G073160 Triticum turgidum HOM05M002654 ORTHO05M003266 1.7e-74 282.3 158 91.8
Ma01_g23100 Musa acuminata HOM05M002654 ORTHO05M003266 4.2e-73 277.7 201 71.1
Aco000456 Ananas comosus HOM05M002654 ORTHO05M003266 5.5e-73 277.3 202 68.8
CALSI_Maker00009134 Calamus simplicifolius HOM05M002654 ORTHO05M003266 5.5e-73 277.3 201 71.1
DDU229G0011 Dioscorea dumetorum HOM05M002654 ORTHO05M003266 7.2e-73 276.9 201 68.7
p5.00_sc00105_p0030 Elaeis guineensis HOM05M002654 ORTHO05M003266 9.4e-73 276.6 201 69.2
DDU314G0190 Dioscorea dumetorum HOM05M002654 ORTHO05M003266 2.1e-72 275.4 201 68.2
Aco020371 Ananas comosus HOM05M002654 ORTHO05M003266 2.0e-70 268.9 201 67.7
MBI04_g35350_MAGBIO Magnolia biondii HOM05M002654 ORTHO05M003266 2.0e-70 268.9 201 68.2
p5.00_sc00039_p0049 Elaeis guineensis HOM05M002654 ORTHO05M003266 3.3e-70 268.1 201 66.7
OsKitaake01g055300 Oryza sativa Kitaake HOM05M002654 ORTHO05M003266 4.4e-70 267.7 200 65.5
OsR498G0100263500.01 Oryza sativa ssp. indica HOM05M002654 ORTHO05M003266 4.4e-70 267.7 200 65.5
Os01g0178200 Oryza sativa ssp. japonica HOM05M002654 ORTHO05M003266 4.4e-70 267.7 202 64.9
GWHGAZTO053506 Oryza alta HOM05M002654 ORTHO05M003266 5.7e-70 267.3 200 65.5
Aco030999 Ananas comosus HOM05M002654 ORTHO05M003266 9.7e-70 266.5 201 67.2
Ma06_g02420 Musa acuminata HOM05M002654 ORTHO05M003266 1.7e-69 265.8 201 66.2
Bradi2g04890 Brachypodium distachyon HOM05M002654 ORTHO05M003266 2.2e-69 265.4 200 65.0
DDU521G0209 Dioscorea dumetorum HOM05M002654 ORTHO05M003266 2.2e-69 265.4 201 65.2
DDU619G0001 Dioscorea dumetorum HOM05M002654 ORTHO05M003266 2.2e-69 265.4 201 65.2
PH02Gene09043 Phyllostachys edulis HOM05M002654 ORTHO05M003266 2.8e-69 265.0 200 64.0
evm.TU.AsparagusV1_01.2004.V1.1 Asparagus officinalis HOM05M002654 ORTHO05M003266 4.8e-69 264.2 201 65.2
OB01G14900 Oryza brachyantha HOM05M002654 ORTHO05M003266 6.3e-69 263.8 200 63.5
AT5G19930 Arabidopsis thaliana HOM05M002654 ORTHO05M003266 1.4e-68 262.7 201 66.2
GWHGAORA003074 Cenchrus purpureus HOM05M002654 ORTHO05M003266 1.8e-68 262.3 157 82.8
Dexi5B01G0004620 Digitaria exilis HOM05M002654 ORTHO05M003266 1.8e-68 262.3 202 63.4
V3.Lp_chr3_0G1588 Lolium perenne HOM05M002654 ORTHO05M003266 4.1e-68 261.2 200 63.5
GWHGAZTO034354 Oryza alta HOM05M002654 ORTHO05M003266 7.0e-68 260.4 200 64.0
GWHGAORA041110 Cenchrus purpureus HOM05M002654 ORTHO05M003266 9.1e-68 260.0 200 62.5
Pahal.5G496000 Panicum hallii HOM05M002654 ORTHO05M003266 9.1e-68 260.0 200 63.5
TraesCS3B03G0334900 Triticum aestivum HOM05M002654 ORTHO05M003266 9.1e-68 260.0 200 63.5
TRIDC3BG019730 Triticum dicoccoides HOM05M002654 ORTHO05M003266 9.1e-68 260.0 202 62.9
TRITD3Bv1G049480 Triticum turgidum HOM05M002654 ORTHO05M003266 9.1e-68 260.0 202 62.9
AET3Gv20267700 Aegilops tauschii HOM05M002654 ORTHO05M003266 1.2e-67 259.6 200 63.0
TraesCS3D03G0259100 Triticum aestivum HOM05M002654 ORTHO05M003266 1.2e-67 259.6 200 63.0
EJB05_31175 Eragrostis curvula HOM05M002654 ORTHO05M003266 1.6e-67 259.2 202 62.4
GWHGASIY013967 Secale cereale HOM05M002654 ORTHO05M003266 1.6e-67 259.2 200 62.5
TraesCS3A03G0266200 Triticum aestivum HOM05M002654 ORTHO05M003266 1.6e-67 259.2 200 63.0
TRIDC3AG015150 Triticum dicoccoides HOM05M002654 ORTHO05M003266 1.6e-67 259.2 200 63.0
Seita.5G126000 Setaria italica HOM05M002654 ORTHO05M003266 2.0e-67 258.8 200 62.5
Sevir.5G122900 Setaria viridis HOM05M002654 ORTHO05M003266 2.0e-67 258.8 200 62.5
Misin05G061300 Miscanthus sinensis HOM05M002654 ORTHO05M003266 2.6e-67 258.5 200 63.5
Potri.018G073000 Populus trichocarpa HOM05M002654 ORTHO05M003266 2.6e-67 258.5 201 65.7
Horvu_MOREX_3H01G146100 Hordeum vulgare HOM05M002654 ORTHO05M003266 3.5e-67 258.1 200 62.5
HPP92_009792 Vanilla planifolia HOM05M002654 ORTHO05M003266 3.5e-67 258.1 201 65.2
Sspon.03G0036480-1B Saccharum spontaneum HOM05M002654 ORTHO05M003266 4.5e-67 257.7 202 62.9
Sspon.03G0036480-2D Saccharum spontaneum HOM05M002654 ORTHO05M003266 4.5e-67 257.7 202 62.4
CDE06G0973 Ceratophyllum demersum HOM05M002654 ORTHO05M003266 1.0e-66 256.5 201 66.7
TRITD3Av1G041150 Triticum turgidum HOM05M002654 ORTHO05M003266 1.0e-66 256.5 194 63.4
Sobic.003G045100 Sorghum bicolor HOM05M002654 ORTHO05M003266 1.3e-66 256.1 200 63.0
HPP92_008697 Vanilla planifolia HOM05M002654 ORTHO05M003266 1.3e-66 256.1 200 64.0
Solyc10g079970.2 Solanum lycopersicum HOM05M002654 ORTHO05M003266 2.2e-66 255.4 201 62.7
Zm00001eb122440 Zea mays B73 HOM05M002654 ORTHO05M003266 2.2e-66 255.4 200 62.5
Zm00007a00030898 Zea mays B104 HOM05M002654 ORTHO05M003266 2.2e-66 255.4 200 62.5
CALSI_Maker00043307 Calamus simplicifolius HOM05M002654 ORTHO05M003266 2.9e-66 255.0 217 60.4
Ot_Chr3_g07290 Oropetium thomaeum HOM05M002654 ORTHO05M003266 2.9e-66 255.0 200 63.0
Asa5G01865 Allium sativum HOM05M002654 ORTHO05M003266 5.0e-66 254.2 201 63.7
GWHGAORA033854 Cenchrus purpureus HOM05M002654 ORTHO05M003266 6.5e-66 253.8 199 62.3
TRITD5Av1G078300 Triticum turgidum HOM05M002654 ORTHO05M003266 6.5e-66 253.8 201 71.1
MBI01_g13571_MAGBIO Magnolia biondii HOM05M002654 ORTHO05M003266 8.5e-66 253.4 202 65.8
evm.TU.AsparagusV1_08.644.V1.1 Asparagus officinalis HOM05M002654 ORTHO05M003266 1.5e-65 252.7 201 63.7
Asa3G02505 Allium sativum HOM05M002654 ORTHO05M003266 1.6e-64 249.2 200 64.0
Spipo14G0005400 Spirodela polyrhiza HOM05M002654 ORTHO05M003266 1.6e-64 249.2 201 61.7
Sspon.03G0036480-1P Saccharum spontaneum HOM05M002654 ORTHO05M003266 2.1e-64 248.8 192 63.5
Glyma.17G120200 Glycine max HOM05M002654 ORTHO05M003266 6.7e-63 243.8 203 61.6
Zosma05g07310 Zostera marina HOM05M002654 ORTHO05M003266 2.6e-62 241.9 201 62.7
DDU230G0017 Dioscorea dumetorum HOM05M002654 ORTHO05M003266 7.5e-62 240.4 176 66.5
EJB05_15584 Eragrostis curvula HOM05M002654 ORTHO05M003266 6.3e-61 237.3 200 66.0
EJB05_15597 Eragrostis curvula HOM05M002654 ORTHO05M003266 6.3e-61 237.3 200 66.0
Mapoly0052s0018 Marchantia polymorpha HOM05M002654 ORTHO05M003266 8.2e-61 236.9 200 61.0
SEGI_37175 Sequoiadendron giganteum HOM05M002654 ORTHO05M003266 3.1e-60 235.0 201 58.7
ATR0083G026 Amborella trichopoda HOM05M002654 ORTHO05M003266 4.0e-55 218.0 201 58.2
SMO340G0297 Selaginella moellendorffii HOM05M002654 ORTHO05M003266 2.8e-53 211.8 201 54.7
Pp3c12_24880 Physcomitrium patens HOM05M002654 ORTHO05M003266 4.1e-52 208.0 200 53.0
Misin06G038500 Miscanthus sinensis HOM05M002654 ORTHO05M003266 1.2e-51 206.5 158 62.0
MCO12G460 Micromonas commoda HOM05M002654 ORTHO05M003266 5.2e-39 164.5 186 50.5
Zjn_sc00005.1.g04430.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M002654 ORTHO05M003266 2.0e-38 162.5 126 69.0
GWHGAORA033825 Cenchrus purpureus HOM05M002654 ORTHO05M003266 7.5e-38 160.6 200 44.5
Dexi5A01G0004500 Digitaria exilis HOM05M002654 ORTHO05M003266 3.7e-37 158.3 126 65.1
TRIDC5BG018490 Triticum dicoccoides HOM05M002654 ORTHO05M003266 8.3e-37 157.1 93 91.4
Cre17.g726350 Chlamydomonas reinhardtii HOM05M002654 ORTHO05M003266 1.1e-36 156.8 173 48.6
Zm00007a00005659 Zea mays B104 HOM05M002654 ORTHO05M005193 9.5e-33 143.7 182 46.2
PRCOL_00002470 Prasinoderma coloniale HOM05M002654 ORTHO05M003266 1.4e-31 139.8 193 44.0
Zm00007a00016711 Zea mays B104 HOM05M002654 ORTHO05M027070 1.5e-30 136.3 182 45.1
SEGI_23420 Sequoiadendron giganteum HOM05M002654 ORTHO05M003266 3.4e-30 135.2 145 49.0
Glyma.05G012000 Glycine max HOM05M002654 ORTHO05M003266 1.6e-27 126.3 114 61.4
Zm00007a00049413 Zea mays B104 HOM05M002654 ORTHO05M003266 1.1e-25 120.2 151 44.4
Zm00007a00020318 Zea mays B104 HOM05M002654 ORTHO05M027070 3.3e-25 118.6 182 40.1
Zm00007a00048662 Zea mays B104 HOM05M002654 ORTHO05M003266 7.3e-25 117.5 114 51.8
SEGI_36873 Sequoiadendron giganteum HOM05M002654 ORTHO05M003266 1.8e-23 112.8 145 47.6
Zm00001eb342450 Zea mays B73 HOM05M002654 ORTHO05M027070 3.7e-21 105.1 161 37.3
Asa4G06445 Allium sativum HOM05M002654 ORTHO05M003266 3.2e-20 102.1 74 63.5
Cre02.g118200 Chlamydomonas reinhardtii HOM05M002654 ORTHO05M003266 7.1e-20 100.9 260 32.7
CDE07G1479 Ceratophyllum demersum HOM05M002654 ORTHO05M003266 1.2e-19 100.1 78 56.4
Zm00007a00028694 Zea mays B104 HOM05M002654 ORTHO05M003266 1.5e-17 93.2 75 50.7
Asa2G07289 Allium sativum HOM05M002654 ORTHO05M003266 1.2e-16 90.1 75 56.0
Asa2G07293 Allium sativum HOM05M002654 ORTHO05M003266 1.6e-16 89.7 75 57.3
Asa7G04517 Allium sativum HOM05M002654 ORTHO05M003266 4.7e-16 88.2 80 60.0
Asa6G05614 Allium sativum HOM05M002654 ORTHO05M003266 3.8e-13 78.6 75 58.7
Zjn_sc00003.1.g02300.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M002654 ORTHO05M003266 2.7e-11 72.4 49 77.6
Asa2G07317 Allium sativum HOM05M002654 ORTHO05M003266 7.8e-11 70.9 84 48.8
Asa1G00600 Allium sativum HOM05M002654 ORTHO05M003266 1.3e-10 70.1 112 39.3
Zm00007a00029852 Zea mays B104 HOM05M002654 ORTHO05M275342 1.5e-09 66.6 162 35.2
SEGI_10855 Sequoiadendron giganteum HOM05M002654 ORTHO05M003266 1.4e-07 60.1 78 43.6
Zm00007a00024032 Zea mays B104 HOM05M004274 ORTHO05M005193 3.1e-07 58.9 161 32.9
Asa2G04753 Allium sativum HOM05M002654 ORTHO05M003266 6.9e-07 57.8 110 35.5


User provided reference genes

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