Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
V3.Lp_scaffold_291G4 Lolium perenne HOM05M007909 ORTHO05M008820 0.0e+00 1146.0 590 100.0
V3.Lp_chr7_0.1G10498 Lolium perenne HOM05M007909 ORTHO05M008820 2.8e-210 734.9 556 72.1
TraesCS7A03G0995800 Triticum aestivum HOM05M007909 ORTHO05M008820 2.3e-103 379.8 644 42.2
TRITD7Av1G222260 Triticum turgidum HOM05M007909 ORTHO05M008820 1.1e-102 377.5 644 42.2
PH02Gene37076 Phyllostachys edulis HOM05M007909 ORTHO05M008820 1.4e-100 370.5 612 44.6
Horvu_MOREX_7H01G570800 Hordeum vulgare HOM05M007909 ORTHO05M008820 5.2e-100 368.6 640 41.2
TraesCS7B03G0832600 Triticum aestivum HOM05M007909 ORTHO05M008820 5.2e-100 368.6 639 42.3
TraesCS7D03G0952000 Triticum aestivum HOM05M007909 ORTHO05M008820 1.2e-99 367.5 645 42.2
TRIDC7BG049730 Triticum dicoccoides HOM05M007909 ORTHO05M008820 1.5e-99 367.1 647 41.6
TraesCS7B03G0832400 Triticum aestivum HOM05M007909 ORTHO05M008820 1.7e-98 363.6 636 40.7
TraesCS7D03G0951900 Triticum aestivum HOM05M007909 ORTHO05M008820 3.7e-98 362.5 629 41.0
GWHGASIY028425 Secale cereale HOM05M007909 ORTHO05M008820 6.6e-95 351.7 628 41.2
TRIDC7BG049740 Triticum dicoccoides HOM05M007909 ORTHO05M008820 5.4e-89 332.0 566 42.6
GWHGASIY040508 Secale cereale HOM05M007909 ORTHO05M008820 1.6e-88 330.5 596 40.3
TraesCS7A03G0995500 Triticum aestivum HOM05M007909 ORTHO05M008820 2.7e-88 329.7 558 41.6
GWHGASIY040520 Secale cereale HOM05M007909 ORTHO05M008820 1.5e-83 313.9 574 39.2
GWHGASIY040516 Secale cereale HOM05M007909 ORTHO05M008820 3.6e-77 292.7 574 38.7
TRITD7Bv1G170420 Triticum turgidum HOM05M007909 ORTHO05M008820 4.9e-74 282.3 572 38.8
TRIDC7AG057290 Triticum dicoccoides HOM05M007909 ORTHO05M008820 2.3e-71 273.5 570 37.2
TRIDC7AG057330 Triticum dicoccoides HOM05M007909 ORTHO05M008820 6.6e-71 271.9 558 38.4
AET7Gv20997400 Aegilops tauschii HOM05M007909 ORTHO05M008820 5.8e-67 258.8 559 38.1
GWHGASIY040509 Secale cereale HOM05M007909 ORTHO05M008820 6.0e-64 248.8 541 37.0
EJB05_41014 Eragrostis curvula HOM05M007909 ORTHO05M008820 2.1e-61 240.4 591 35.5
Bradi1g34695 Brachypodium distachyon HOM05M007909 ORTHO05M008820 1.1e-60 238.0 332 46.4
Sevir.4G285400 Setaria viridis HOM05M007909 ORTHO05M008820 3.1e-60 236.5 615 35.3
GWHGAORA057680 Cenchrus purpureus HOM05M007909 ORTHO05M008820 3.6e-53 213.0 445 38.7
Pahal.4G020700 Panicum hallii HOM05M007909 ORTHO05M008820 1.2e-51 208.0 531 36.3
GWHGAORA028881 Cenchrus purpureus HOM05M007909 ORTHO05M008820 5.8e-51 205.7 500 35.0
Misin18G256900 Miscanthus sinensis HOM05M007909 ORTHO05M008820 2.9e-50 203.4 572 33.9
TRITD7Av1G221910 Triticum turgidum HOM05M007909 ORTHO05M008820 3.8e-50 203.0 197 58.4
Sspon.08G0024940-2D Saccharum spontaneum HOM05M007909 ORTHO05M008820 3.5e-48 196.4 586 33.3
Zm00001eb227390 Zea mays B73 HOM05M007909 ORTHO05M008820 7.9e-48 195.3 354 40.1
Misin19G230100 Miscanthus sinensis HOM05M007909 ORTHO05M008820 9.6e-46 188.3 391 37.6
Seita.4G273600 Setaria italica HOM05M019281 ORTHO05M008820 2.4e-44 183.7 531 33.7
Sspon.08G0024940-1C Saccharum spontaneum HOM05M007909 ORTHO05M008820 8.4e-42 175.3 373 36.7
Misin19G230200 Miscanthus sinensis HOM05M007909 ORTHO05M008820 9.3e-41 171.8 294 42.9
GWHGAORA057653 Cenchrus purpureus HOM05M007909 ORTHO05M008820 1.0e-39 168.3 427 34.4
Bradi1g34681 Brachypodium distachyon HOM05M007909 ORTHO05M008820 3.9e-39 166.4 551 31.0
Zm00007a00023600 Zea mays B104 HOM05M007909 ORTHO05M008820 7.4e-38 162.2 237 43.9
AET7Gv20997600 Aegilops tauschii HOM05M007909 ORTHO05M008820 4.5e-35 152.9 424 32.8
Misin18G256700 Miscanthus sinensis HOM05M007909 ORTHO05M008820 1.3e-34 151.4 309 37.5
Sobic.010G257000 Sorghum bicolor HOM05M007909 ORTHO05M008820 1.7e-34 151.0 206 43.2
Zjn_sc00068.1.g02590.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M007909 ORTHO05M008820 1.5e-27 127.9 328 35.7
Misin18G256800 Miscanthus sinensis HOM05M007909 ORTHO05M008820 3.7e-21 106.7 116 50.9
Aco010891 Ananas comosus HOM05M000191 ORTHO05M008820 1.0e-18 98.6 319 29.8
Dexi6A01G0002450 Digitaria exilis HOM05M019281 ORTHO05M008820 1.1e-14 85.1 295 31.9
Bradi5g12160 Brachypodium distachyon HOM05M000191 ORTHO05M000335 7.4e-14 82.4 325 25.5
evm.TU.AsparagusV1_06.425.V1.1 Asparagus officinalis HOM05M000191 ORTHO05M008820 4.1e-12 76.6 248 29.4
EJB05_27995 Eragrostis curvula HOM05M000191 ORTHO05M000335 4.5e-11 73.2 238 28.6
EJB05_28015 Eragrostis curvula HOM05M000191 ORTHO05M000335 4.5e-11 73.2 238 28.6
PH02Gene02814 Phyllostachys edulis HOM05M007909 ORTHO05M008820 5.9e-11 72.8 56 62.5
PRCOL_00002898 Prasinoderma coloniale HOM05M000191 ORTHO05M000335 1.0e-10 72.0 230 28.3
Sobic.001G227900 Sorghum bicolor HOM05M000191 ORTHO05M000335 1.0e-10 72.0 283 25.4
PH02Gene33414 Phyllostachys edulis HOM05M000191 ORTHO05M000335 1.7e-10 71.2 236 28.8
Asa8G05981 Allium sativum HOM05M000191 ORTHO05M008820 2.9e-10 70.5 238 29.4
Horvu_MOREX_7H01G683500 Hordeum vulgare HOM05M000191 ORTHO05M010091 2.9e-10 70.5 230 28.3
Asa5G02216 Allium sativum HOM05M000191 ORTHO05M000335 3.8e-10 70.1 229 27.1
EJB05_37205 Eragrostis curvula HOM05M005176 ORTHO05M006200 3.8e-10 70.1 287 28.9
Dexi4B01G0022440 Digitaria exilis HOM05M019281 ORTHO05M008820 8.5e-10 68.9 353 28.0
Seita.9G231000 Setaria italica HOM05M000191 ORTHO05M000335 8.5e-10 68.9 239 26.8
HPP92_019123 Vanilla planifolia HOM05M000191 ORTHO05M000335 8.5e-10 68.9 203 27.6
OsKitaake04g085900 Oryza sativa Kitaake HOM05M005176 ORTHO05M006200 1.1e-09 68.6 235 30.2
OsR498G0408223300.01 Oryza sativa ssp. indica HOM05M005176 ORTHO05M006200 1.1e-09 68.6 235 30.2
Asa7G07639 Allium sativum HOM05M000191 ORTHO05M000335 1.5e-09 68.2 243 29.2
EJB05_37201 Eragrostis curvula HOM05M005176 ORTHO05M006200 1.5e-09 68.2 264 29.9
Asa5G06070 Allium sativum HOM05M000191 ORTHO05M000335 1.9e-09 67.8 231 26.0
Glyma.16G198800 Glycine max HOM05M000191 ORTHO05M000335 1.9e-09 67.8 249 28.5
PH02Gene13861 Phyllostachys edulis HOM05M000191 ORTHO05M000335 1.9e-09 67.8 247 26.3
Ma03_g13030 Musa acuminata HOM05M000191 ORTHO05M000335 2.5e-09 67.4 247 27.1
Solyc12g099380.3 Solanum lycopersicum HOM05M000191 ORTHO05M000335 2.5e-09 67.4 243 28.4
V3.Lp_chr6_0G3220 Lolium perenne HOM05M000191 ORTHO05M000335 3.2e-09 67.0 234 27.8
V3.Lp_chr7_0.1G11930 Lolium perenne HOM05M000191 ORTHO05M000335 9.4e-09 65.5 240 28.3
Ot_Chr2_g15758 Oropetium thomaeum HOM05M000191 ORTHO05M000335 9.4e-09 65.5 234 27.4
Zm00007a00038815 Zea mays B104 HOM05M007909 ORTHO05M008820 9.4e-09 65.5 128 33.6
GWHGAZTO068597 Oryza alta HOM05M000191 ORTHO05M000335 1.2e-08 65.1 256 25.4
AET7Gv21229900 Aegilops tauschii HOM05M000191 ORTHO05M010091 2.1e-08 64.3 243 28.0
V3.Lp_chr6_0G3910 Lolium perenne HOM05M000191 ORTHO05M000335 2.1e-08 64.3 247 27.5
TraesCS7D03G1159800 Triticum aestivum HOM05M000191 ORTHO05M010091 2.1e-08 64.3 243 28.0
CALSI_Maker00007042 Calamus simplicifolius HOM05M000191 ORTHO05M000335 2.7e-08 63.9 232 30.6
CDE09G1307 Ceratophyllum demersum HOM05M000191 ORTHO05M000335 2.7e-08 63.9 242 26.9
Zosma01g17200 Zostera marina HOM05M000191 ORTHO05M000335 2.7e-08 63.9 242 27.7
Misin01G211100 Miscanthus sinensis HOM05M000191 ORTHO05M000335 3.6e-08 63.5 239 26.8
Misin11G032200 Miscanthus sinensis HOM05M005176 ORTHO05M006200 3.6e-08 63.5 243 28.0
GWHGASIY035616 Secale cereale HOM05M000191 ORTHO05M010091 3.6e-08 63.5 239 28.9
TraesCS7D03G1240600 Triticum aestivum HOM05M000191 ORTHO05M013612 3.6e-08 63.5 242 26.0
GWHGAZTO016847 Oryza alta HOM05M000191 ORTHO05M000335 6.1e-08 62.8 256 25.0
OsKitaake02g064300 Oryza sativa Kitaake HOM05M000191 ORTHO05M000335 6.1e-08 62.8 256 25.0
OsR498G0203099000.01 Oryza sativa ssp. indica HOM05M000191 ORTHO05M000335 6.1e-08 62.8 256 25.0
Os02g0182100 Oryza sativa ssp. japonica HOM05M000191 ORTHO05M000335 6.1e-08 62.8 256 25.0
Pahal.7G109900 Panicum hallii HOM05M005176 ORTHO05M006200 6.1e-08 62.8 244 27.5
HPP92_015365 Vanilla planifolia HOM05M000191 ORTHO05M000335 8.0e-08 62.4 233 26.2
GWHGASIY035615 Secale cereale HOM05M000191 ORTHO05M010091 1.0e-07 62.0 239 27.6
Zm00001eb374760 Zea mays B73 HOM05M000191 ORTHO05M000335 1.0e-07 62.0 257 27.2
Sevir.9G230500 Setaria viridis HOM05M000191 ORTHO05M000335 1.4e-07 61.6 227 26.4
ATR0580G354 Amborella trichopoda HOM05M000191 ORTHO05M000335 1.8e-07 61.2 245 30.2
Horvu_MOREX_6H01G554800 Hordeum vulgare HOM05M005176 ORTHO05M006200 1.8e-07 61.2 257 26.1
Horvu_MOREX_7H01G673300 Hordeum vulgare HOM05M000191 ORTHO05M010091 1.8e-07 61.2 233 26.6
OsKitaake10g123600 Oryza sativa Kitaake HOM05M000191 ORTHO05M000335 2.3e-07 60.8 252 27.4
OsR498G1018858200.01 Oryza sativa ssp. indica HOM05M000191 ORTHO05M000335 2.3e-07 60.8 252 27.4
Os10g0463400 Oryza sativa ssp. japonica HOM05M000191 ORTHO05M000335 2.3e-07 60.8 252 27.4
OB02G15530 Oryza brachyantha HOM05M000191 ORTHO05M000335 3.0e-07 60.5 247 25.5
Sspon.08G0001860-2D Saccharum spontaneum HOM05M000973 ORTHO05M008820 3.0e-07 60.5 102 43.1
TraesCS7A03G1219200 Triticum aestivum HOM05M000191 ORTHO05M010091 3.0e-07 60.5 242 26.4
p5.00_sc00019_p0085 Elaeis guineensis HOM05M000191 ORTHO05M000335 4.0e-07 60.1 254 26.8
SEGI_08296 Sequoiadendron giganteum HOM05M000191 ORTHO05M000335 4.0e-07 60.1 240 26.7
SEGI_17815 Sequoiadendron giganteum HOM05M000191 ORTHO05M000335 4.0e-07 60.1 244 27.0
EJB05_33074 Eragrostis curvula HOM05M005176 ORTHO05M006200 5.2e-07 59.7 265 26.4
PH02Gene30734 Phyllostachys edulis HOM05M000191 ORTHO05M000335 5.2e-07 59.7 248 23.8
Sevir.7G064600 Setaria viridis HOM05M005176 ORTHO05M006200 5.2e-07 59.7 245 26.9
Seita.7G057700 Setaria italica HOM05M005176 ORTHO05M006200 6.7e-07 59.3 245 26.9
Zosma03g03830 Zostera marina HOM05M000191 ORTHO05M000335 6.7e-07 59.3 239 24.7
Misin16G123500 Miscanthus sinensis HOM05M005176 ORTHO05M006200 8.8e-07 58.9 224 26.8
TraesCS6B03G1152200 Triticum aestivum HOM05M005176 ORTHO05M006200 8.8e-07 58.9 259 27.0
DDU049G0135 Dioscorea dumetorum HOM05M000089 ORTHO05M000038 1.5e-06 58.2 90 43.3
Solyc03g026250.3 Solanum lycopersicum HOM05M000191 ORTHO05M000335 1.5e-06 58.2 196 27.0
Seita.7G055200 Setaria italica HOM05M005176 ORTHO05M006200 2.0e-06 57.8 149 32.2
Sevir.7G061500 Setaria viridis HOM05M005176 ORTHO05M006200 2.0e-06 57.8 149 32.2
TraesCS6B03G1152300 Triticum aestivum HOM05M005176 ORTHO05M006200 2.0e-06 57.8 258 26.0
p5.00_sc00130_p0037 Elaeis guineensis HOM05M000191 ORTHO05M000335 2.6e-06 57.4 259 27.0
OB04G16510 Oryza brachyantha HOM05M005176 ORTHO05M006200 2.6e-06 57.4 228 28.1
PH02Gene04797 Phyllostachys edulis HOM05M000191 ORTHO05M000335 2.6e-06 57.4 256 23.8
AET6Gv20914300 Aegilops tauschii HOM05M005176 ORTHO05M006200 3.3e-06 57.0 258 26.7
SEGI_33069 Sequoiadendron giganteum HOM05M000191 ORTHO05M000335 3.3e-06 57.0 240 26.7
TraesCS6D03G0820800 Triticum aestivum HOM05M005176 ORTHO05M006200 3.3e-06 57.0 258 26.7
Zm00001eb086410 Zea mays B73 HOM05M005176 ORTHO05M006200 3.3e-06 57.0 231 27.3
Zm00007a00035511 Zea mays B104 HOM05M005176 ORTHO05M006200 3.3e-06 57.0 231 27.3
AT4G31920 Arabidopsis thaliana HOM05M000191 ORTHO05M000335 4.4e-06 56.6 243 28.0
TRITD6Bv1G212780 Triticum turgidum HOM05M005176 ORTHO05M006200 4.4e-06 56.6 259 26.6
HPP92_020468 Vanilla planifolia HOM05M000089 ORTHO05M000038 4.4e-06 56.6 68 51.5
Glyma.19G047900 Glycine max HOM05M000191 ORTHO05M000335 5.7e-06 56.2 265 27.5
Sobic.006G035700 Sorghum bicolor HOM05M005176 ORTHO05M006200 5.7e-06 56.2 229 27.1
TraesCS7B03G1240200 Triticum aestivum HOM05M000191 ORTHO05M000335 5.7e-06 56.2 232 27.6
Pahal.7G106300 Panicum hallii HOM05M005176 ORTHO05M006200 7.5e-06 55.8 142 31.0
GWHGASIY023763 Secale cereale HOM05M010086 ORTHO05M011759 9.7e-06 55.5 241 24.5
GWHGASIY033999 Secale cereale HOM05M005176 ORTHO05M006200 9.7e-06 55.5 259 26.3
Zm00007a00026753 Zea mays B104 HOM05M007909 ORTHO05M008820 9.7e-06 55.5 121 29.8


User provided reference genes

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