Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TraesCS2D03G0147400 Triticum aestivum HOM05M004347 ORTHO05M005385 2.1e-112 408.3 209 100.0
AET0Gv20117300 Aegilops tauschii HOM05M004347 ORTHO05M005385 8.0e-112 406.4 209 99.5
TraesCS2A03G0149700 Triticum aestivum HOM05M004347 ORTHO05M005385 2.6e-110 401.4 209 98.1
TRITD2Av1G018040 Triticum turgidum HOM05M004347 ORTHO05M005385 2.6e-110 401.4 209 98.1
TraesCS2B03G0210900 Triticum aestivum HOM05M004347 ORTHO05M005385 4.4e-110 400.6 209 97.6
TRIDC2BG010310 Triticum dicoccoides HOM05M004347 ORTHO05M005385 4.4e-110 400.6 209 97.6
TRITD2Bv1G024160 Triticum turgidum HOM05M004347 ORTHO05M005385 4.4e-110 400.6 209 97.6
GWHGASIY006011 Secale cereale HOM05M004347 ORTHO05M005385 6.3e-109 396.7 209 97.1
GWHGASIY006017 Secale cereale HOM05M004347 ORTHO05M005385 6.3e-109 396.7 209 97.1
GWHGASIY006233 Secale cereale HOM05M004347 ORTHO05M005385 6.3e-109 396.7 209 97.1
Horvu_MOREX_2H01G080400 Hordeum vulgare HOM05M004347 ORTHO05M005385 4.1e-108 394.0 210 96.7
Bradi5g05220 Brachypodium distachyon HOM05M004347 ORTHO05M005385 1.4e-100 369.0 209 89.5
PH02Gene19090 Phyllostachys edulis HOM05M004347 ORTHO05M005385 1.8e-100 368.6 207 90.3
PH02Gene26280 Phyllostachys edulis HOM05M004347 ORTHO05M005385 4.1e-100 367.5 209 88.5
OsKitaake04g058700 Oryza sativa Kitaake HOM05M004347 ORTHO05M005385 3.8e-98 360.9 210 88.1
Os04g0270200 Oryza sativa ssp. japonica HOM05M004347 ORTHO05M005385 3.8e-98 360.9 210 88.1
OsR498G0407900000.01 Oryza sativa ssp. indica HOM05M004347 ORTHO05M005385 8.6e-98 359.8 210 88.1
GWHGAZTO028631 Oryza alta HOM05M004347 ORTHO05M005385 3.2e-97 357.8 212 87.3
Misin02G081600 Miscanthus sinensis HOM05M004347 ORTHO05M005385 4.2e-97 357.5 209 86.6
GWHGAZTO078299 Oryza alta HOM05M004347 ORTHO05M005385 7.2e-97 356.7 208 88.5
Sobic.001G105100 Sorghum bicolor HOM05M004347 ORTHO05M005385 2.1e-96 355.1 209 85.6
Zjn_sc00006.1.g07880.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M004347 ORTHO05M005385 2.8e-96 354.8 207 86.0
Pahal.7G057500 Panicum hallii HOM05M004347 ORTHO05M005385 4.7e-96 354.0 209 84.2
Sspon.01G0046470-1B Saccharum spontaneum HOM05M004347 ORTHO05M005385 4.7e-96 354.0 209 85.6
OB04G14540 Oryza brachyantha HOM05M004347 ORTHO05M005385 6.1e-96 353.6 211 85.8
Misin01G094700 Miscanthus sinensis HOM05M004347 ORTHO05M005385 1.8e-95 352.1 209 84.7
GWHGAORA051661 Cenchrus purpureus HOM05M004347 ORTHO05M005385 5.2e-95 350.5 211 82.9
GWHGAORA051683 Cenchrus purpureus HOM05M004347 ORTHO05M005385 8.8e-95 349.7 211 82.9
GWHGAORA018953 Cenchrus purpureus HOM05M004347 ORTHO05M005385 2.0e-94 348.6 211 82.5
Misin12G039500 Miscanthus sinensis HOM05M004347 ORTHO05M005385 2.0e-94 348.6 209 84.7
Sevir.7G011100 Setaria viridis HOM05M004347 ORTHO05M005385 2.0e-94 348.6 209 83.7
Ot_Chr6_g26303 Oropetium thomaeum HOM05M004347 ORTHO05M005385 2.6e-94 348.2 209 85.2
EJB05_40414 Eragrostis curvula HOM05M004347 ORTHO05M005385 3.4e-94 347.8 201 88.6
Zm00001eb086910 Zea mays B73 HOM05M004347 ORTHO05M005385 5.7e-94 347.1 209 83.3
Seita.7G026800 Setaria italica HOM05M004347 ORTHO05M005385 7.5e-94 346.7 209 83.3
Sobic.006G034800 Sorghum bicolor HOM05M004347 ORTHO05M005385 9.8e-94 346.3 209 83.7
Sspon.05G0013450-1A Saccharum spontaneum HOM05M004347 ORTHO05M005385 1.3e-93 345.9 209 83.7
Sspon.05G0013450-2B Saccharum spontaneum HOM05M004347 ORTHO05M005385 1.3e-93 345.9 209 83.7
Sspon.05G0013450-1P Saccharum spontaneum HOM05M004347 ORTHO05M005385 4.5e-91 337.4 202 84.7
Dexi7A01G0001890 Digitaria exilis HOM05M004347 ORTHO05M005385 8.6e-90 333.2 201 83.1
Sspon.01G0046470-1P Saccharum spontaneum HOM05M004347 ORTHO05M005385 3.3e-89 331.3 209 81.8
TRIDC2AG008520 Triticum dicoccoides HOM05M004347 ORTHO05M005385 4.0e-87 324.3 166 98.2
Aco014019 Ananas comosus HOM05M004347 ORTHO05M005385 4.9e-77 290.8 208 71.6
p5.00_sc00071_p0016 Elaeis guineensis HOM05M004347 ORTHO05M005385 1.3e-74 282.7 206 69.4
Ma01_g03510 Musa acuminata HOM05M004347 ORTHO05M005385 6.6e-74 280.4 209 66.5
GWHGAORA018935 Cenchrus purpureus HOM05M004347 ORTHO05M005385 1.6e-72 275.8 211 70.1
CALSI_Maker00044215 Calamus simplicifolius HOM05M004347 ORTHO05M005385 8.1e-72 273.5 206 66.5
DDU637G0054 Dioscorea dumetorum HOM05M004347 ORTHO05M005385 1.8e-71 272.3 206 66.0
p5.00_sc00083_p0006 Elaeis guineensis HOM05M004347 ORTHO05M005385 1.5e-70 269.2 206 65.5
Asa5G03277 Allium sativum HOM05M004347 ORTHO05M005385 2.6e-70 268.5 207 65.2
MBI12_g14493_MAGBIO Magnolia biondii HOM05M004347 ORTHO05M005385 2.1e-67 258.8 210 61.4
Zosma05g31350 Zostera marina HOM05M004347 ORTHO05M005385 6.6e-66 253.8 206 62.1
TRIDC5BG027120 Triticum dicoccoides HOM05M004347 ORTHO05M005385 1.5e-65 252.7 135 94.8
HPP92_001543 Vanilla planifolia HOM05M004347 ORTHO05M005385 1.2e-64 249.6 204 60.3
Glyma.02G301900 Glycine max HOM05M004347 ORTHO05M005385 2.4e-63 245.4 204 58.3
TRIDC4AG047740 Triticum dicoccoides HOM05M004347 ORTHO05M005385 4.0e-63 244.6 134 94.0
Glyma.14G012300 Glycine max HOM05M004347 ORTHO05M005385 1.5e-62 242.7 204 57.4
Sspon.05G0013450-3D Saccharum spontaneum HOM05M004347 ORTHO05M005385 2.9e-61 238.4 146 82.9
Dexi7B01G0002790 Digitaria exilis HOM05M004347 ORTHO05M005385 3.8e-61 238.0 145 82.1
Potri.001G370200 Populus trichocarpa HOM05M004347 ORTHO05M005385 1.9e-60 235.7 205 56.6
ATR0680G115 Amborella trichopoda HOM05M004347 ORTHO05M005385 2.4e-60 235.3 206 56.8
Zm00007a00031749 Zea mays B104 HOM05M004347 ORTHO05M005385 5.4e-60 234.2 145 81.4
Potri.001G370000 Populus trichocarpa HOM05M004347 ORTHO05M005385 3.5e-59 231.5 205 55.6
Spipo8G0006800 Spirodela polyrhiza HOM05M004347 ORTHO05M005385 3.5e-59 231.5 210 59.5
evm.TU.AsparagusV1_01.1273.V1.1 Asparagus officinalis HOM05M004347 ORTHO05M005385 4.6e-59 231.1 177 66.7
AT5G55940 Arabidopsis thaliana HOM05M004347 ORTHO05M005385 1.0e-58 229.9 206 54.4
SEGI_32834 Sequoiadendron giganteum HOM05M004347 ORTHO05M005385 1.0e-58 229.9 211 59.2
Solyc10g005780.3 Solanum lycopersicum HOM05M004347 ORTHO05M005385 1.7e-58 229.2 210 52.9
Solyc07g009160.3 Solanum lycopersicum HOM05M004347 ORTHO05M005385 5.6e-57 224.2 207 52.7
Misin11G034700 Miscanthus sinensis HOM05M004347 ORTHO05M005385 1.2e-56 223.0 137 82.5
SMO367G0477 Selaginella moellendorffii HOM05M004347 ORTHO05M005385 1.9e-49 199.1 210 52.9
TRIDC1BG033460 Triticum dicoccoides HOM05M004347 ORTHO05M005385 1.3e-45 186.4 142 76.1
Mapoly0118s0025 Marchantia polymorpha HOM05M004347 ORTHO05M005385 1.4e-44 183.0 208 50.5
Pp3c17_17770 Physcomitrium patens HOM05M004347 ORTHO05M005385 1.4e-44 183.0 211 48.8
DDU819G0003 Dioscorea dumetorum HOM05M004347 ORTHO05M005385 1.1e-41 173.3 145 60.7
MBI12_g46257_MAGBIO Magnolia biondii HOM05M004347 ORTHO05M005385 4.8e-40 167.9 178 53.9
AagrBONN_evm.TU.Sc2ySwM_117.1155 Anthoceros agrestis HOM05M004347 ORTHO05M005385 3.4e-38 161.8 202 46.0
TRIDC3BG032320 Triticum dicoccoides HOM05M004347 ORTHO05M005385 5.5e-28 127.9 71 95.8
Zjn_sc00032.1.g01790.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M004450 ORTHO05M005754 3.9e-26 121.7 96 69.8
GWHGAORA051682 Cenchrus purpureus HOM05M004347 ORTHO05M005385 6.7e-26 120.9 82 70.7
Cre05.g240550 Chlamydomonas reinhardtii HOM05M004347 ORTHO05M005385 8.7e-26 120.6 197 38.1
Zm00007a00042898 Zea mays B104 HOM05M004347 ORTHO05M005385 1.1e-25 120.2 66 86.4
PRCOL_00005958 Prasinoderma coloniale HOM05M004347 ORTHO05M005385 1.4e-23 113.2 197 41.1
CBR_g45852 Chara braunii HOM05M004347 ORTHO05M005385 4.2e-20 101.7 131 48.1
MCO09G115 Micromonas commoda HOM05M004347 ORTHO05M005385 1.6e-19 99.8 205 36.1
EJB05_13667 Eragrostis curvula HOM05M004347 ORTHO05M005385 7.9e-19 97.4 61 75.4
AT5G51620 Arabidopsis thaliana HOM05M004347 ORTHO05M005385 1.2e-11 73.6 51 58.8
Pp3c14_20520 Physcomitrium patens HOM05M004347 ORTHO05M005385 3.7e-08 62.0 118 30.5
CBR_g17083 Chara braunii HOM05M004347 ORTHO05M005385 9.1e-07 57.4 83 37.3


User provided reference genes

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