Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TRITD4Av1G201390 Triticum turgidum HOM05M005449 ORTHO05M006879 7.2e-212 739.6 377 100.0
AET4Gv20028200 Aegilops tauschii HOM05M005449 ORTHO05M006879 4.1e-207 723.8 378 97.9
TraesCS4D03G0027100 Triticum aestivum HOM05M005449 ORTHO05M006879 1.7e-205 718.4 378 97.1
TraesCS4A03G0749000 Triticum aestivum HOM05M005449 ORTHO05M006879 3.2e-204 714.1 377 97.6
TraesCS4B03G0037900 Triticum aestivum HOM05M005449 ORTHO05M006879 1.8e-199 698.4 379 95.0
TRITD4Bv1G004920 Triticum turgidum HOM05M005449 ORTHO05M006879 1.8e-199 698.4 379 95.0
GWHGASIY017993 Secale cereale HOM05M005449 ORTHO05M006879 1.6e-190 668.7 380 93.9
Horvu_MOREX_4H01G018000 Hordeum vulgare HOM05M005449 ORTHO05M006879 3.5e-190 667.5 376 92.0
Bradi1g12980 Brachypodium distachyon HOM05M005449 ORTHO05M006879 2.0e-177 625.2 384 82.0
V3.Lp_chr4_0G8454 Lolium perenne HOM05M005449 ORTHO05M006879 2.0e-177 625.2 374 86.4
PH02Gene49486 Phyllostachys edulis HOM05M005449 ORTHO05M006879 1.6e-163 578.9 383 79.6
GWHGAZTO075823 Oryza alta HOM05M005449 ORTHO05M006879 1.6e-158 562.4 382 75.4
OB03G36110 Oryza brachyantha HOM05M005449 ORTHO05M006879 6.6e-157 557.0 385 74.0
Zm00001eb217880 Zea mays B73 HOM05M005449 ORTHO05M006879 1.1e-154 549.7 390 73.1
Pahal.9G143100 Panicum hallii HOM05M005449 ORTHO05M006879 1.8e-154 548.9 390 73.8
Sobic.001G144600 Sorghum bicolor HOM05M005449 ORTHO05M006879 2.3e-154 548.5 390 73.3
Misin01G141700 Miscanthus sinensis HOM05M005449 ORTHO05M006879 5.2e-154 547.4 388 73.5
Sspon.01G0024810-2B Saccharum spontaneum HOM05M005449 ORTHO05M006879 5.2e-154 547.4 390 73.1
Sspon.01G0024810-3D Saccharum spontaneum HOM05M005449 ORTHO05M006879 5.2e-154 547.4 390 73.1
Misin02G120700 Miscanthus sinensis HOM05M005449 ORTHO05M006879 1.2e-153 546.2 390 73.1
Seita.9G147700 Setaria italica HOM05M005449 ORTHO05M006879 5.8e-153 543.9 388 72.7
GWHGAORA019098 Cenchrus purpureus HOM05M005449 ORTHO05M006879 2.9e-152 541.6 388 72.4
OsR498G0306738200.01 Oryza sativa ssp. indica HOM05M005449 ORTHO05M006879 1.9e-151 538.9 385 72.2
Os03g0664700 Oryza sativa ssp. japonica HOM05M005449 ORTHO05M006879 1.9e-151 538.9 385 72.2
Dexi9B01G0014330 Digitaria exilis HOM05M005449 ORTHO05M006879 9.2e-151 536.6 388 71.9
Ot_Chr4_g08256 Oropetium thomaeum HOM05M005449 ORTHO05M006879 7.8e-150 533.5 389 73.0
Sspon.01G0024810-1P Saccharum spontaneum HOM05M005449 ORTHO05M006879 3.6e-147 524.6 376 73.1
GWHGAZTO025876 Oryza alta HOM05M005449 ORTHO05M006879 8.3e-144 513.5 372 72.0
GWHGAORA051512 Cenchrus purpureus HOM05M005449 ORTHO05M006879 1.3e-141 506.1 388 69.3
Sevir.9G146100 Setaria viridis HOM05M005449 ORTHO05M006879 6.2e-139 497.3 361 71.7
Dexi9A01G0014250 Digitaria exilis HOM05M005449 ORTHO05M006879 3.2e-135 485.0 388 67.3
OsKitaake03g280200 Oryza sativa Kitaake HOM05M005449 ORTHO05M006879 8.1e-131 470.3 351 70.1
EJB05_05287 Eragrostis curvula HOM05M005449 ORTHO05M006879 5.8e-121 437.6 388 65.7
Zm00007a00045916 Zea mays B104 HOM05M005449 ORTHO05M006879 2.1e-118 429.1 330 67.9
Sspon.01G0024810-1A Saccharum spontaneum HOM05M005449 ORTHO05M006879 6.2e-115 417.5 321 70.4
DDU066G0007 Dioscorea dumetorum HOM05M005449 ORTHO05M006879 9.0e-106 387.1 392 55.4
DDU693G0570 Dioscorea dumetorum HOM05M005449 ORTHO05M006879 9.0e-106 387.1 392 55.4
Ma08_g20590 Musa acuminata HOM05M005449 ORTHO05M006879 2.0e-105 386.0 416 52.6
p5.00_sc00095_p0032 Elaeis guineensis HOM05M005449 ORTHO05M006879 2.9e-104 382.1 404 54.2
Spipo2G0015300 Spirodela polyrhiza HOM05M005449 ORTHO05M006879 5.5e-103 377.9 422 51.4
CALSI_Maker00020251 Calamus simplicifolius HOM05M005449 ORTHO05M006879 1.5e-100 369.8 389 54.8
Ma09_g10210 Musa acuminata HOM05M005449 ORTHO05M006879 4.3e-100 368.2 417 49.4
CDE05G2168 Ceratophyllum demersum HOM05M005449 ORTHO05M006879 5.7e-100 367.9 415 51.8
ATR0665G006 Amborella trichopoda HOM05M005449 ORTHO05M006879 2.0e-97 359.4 464 46.6
Potri.010G085500 Populus trichocarpa HOM05M005449 ORTHO05M006879 3.2e-95 352.1 406 50.2
Asa1G04033 Allium sativum HOM05M005449 ORTHO05M006879 9.4e-95 350.5 380 50.0
Glyma.11G008100 Glycine max HOM05M005449 ORTHO05M006879 3.0e-93 345.5 400 49.8
Solyc06g054080.3 Solanum lycopersicum HOM05M005449 ORTHO05M006879 3.9e-93 345.1 396 49.0
Aco005196 Ananas comosus HOM05M005449 ORTHO05M006879 1.5e-92 343.2 403 53.1
Zosma04g00480 Zostera marina HOM05M005449 ORTHO05M006879 2.0e-92 342.8 424 45.8
AT3G22590 Arabidopsis thaliana HOM05M005449 ORTHO05M006879 9.4e-87 323.9 416 46.9
SEGI_38182 Sequoiadendron giganteum HOM05M005449 ORTHO05M006879 2.1e-78 296.2 465 40.2
evm.TU.AsparagusV1_03.518.V1.1 Asparagus officinalis HOM05M005449 ORTHO05M006879 3.3e-76 288.9 244 61.5
HPP92_018620 Vanilla planifolia HOM05M005449 ORTHO05M006879 3.8e-72 275.4 231 63.2
Mapoly0001s0040 Marchantia polymorpha HOM05M005449 ORTHO05M006879 1.6e-70 270.0 468 36.8
Potri.008G155000 Populus trichocarpa HOM05M005449 ORTHO05M006879 1.0e-69 267.3 253 57.3
Pp3c6_19770 Physcomitrium patens HOM05M005449 ORTHO05M006879 3.8e-64 248.8 466 36.1
AagrBONN_evm.TU.Sc2ySwM_344.3801 Anthoceros agrestis HOM05M005449 ORTHO05M006879 8.0e-62 241.1 424 36.8
Asa4G02272 Allium sativum HOM05M005449 ORTHO05M006879 9.5e-55 217.6 165 66.1
GWHGAORA019087 Cenchrus purpureus HOM05M005449 ORTHO05M006879 1.6e-49 200.3 283 48.1
CBR_g48312 Chara braunii HOM05M005449 ORTHO05M006879 3.0e-48 196.1 194 51.5
AET2Gv20848800 Aegilops tauschii HOM05M005449 ORTHO05M006879 4.4e-44 182.2 92 93.5
TraesCS2D03G0861100 Triticum aestivum HOM05M005449 ORTHO05M006879 4.4e-44 182.2 92 93.5
Misin13G090300 Miscanthus sinensis HOM05M005449 ORTHO05M006879 5.8e-44 181.8 159 61.0
TraesCS1D03G0473600 Triticum aestivum HOM05M005449 ORTHO05M006879 2.2e-43 179.9 92 92.4
AET7Gv21323900 Aegilops tauschii HOM05M005449 ORTHO05M006879 2.9e-43 179.5 92 92.4
TraesCS3D03G1148300 Triticum aestivum HOM05M005449 ORTHO05M006879 3.3e-39 166.0 92 88.0
TraesCS4A03G0261800 Triticum aestivum HOM05M005449 ORTHO05M006879 5.6e-39 165.2 92 88.0
PRCOL_00002517 Prasinoderma coloniale HOM05M005449 ORTHO05M006879 4.6e-33 145.6 460 29.1
Cre02.g104550 Chlamydomonas reinhardtii HOM05M005449 ORTHO05M006879 6.0e-33 145.2 168 43.5
MCO02G458 Micromonas commoda HOM05M005449 ORTHO05M006879 2.1e-30 136.7 444 27.7
CALSI_Maker00021468 Calamus simplicifolius HOM05M000279 ORTHO05M000141 4.0e-29 132.5 181 44.8
Asa8G05654 Allium sativum HOM05M005449 ORTHO05M006879 1.3e-27 127.5 206 40.3
TRIDC4BG023690 Triticum dicoccoides HOM05M005449 ORTHO05M006879 1.7e-08 63.9 45 75.6
TRIDC1BG054750 Triticum dicoccoides HOM05M005449 ORTHO05M006879 6.6e-08 62.0 30 96.7
TRIDC3BG016610 Triticum dicoccoides HOM05M005449 ORTHO05M006879 6.6e-08 62.0 30 96.7
TRIDC7BG010520 Triticum dicoccoides HOM05M005449 ORTHO05M006879 8.7e-08 61.6 30 93.3


User provided reference genes

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