Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sspon.02G0051510-1T Saccharum spontaneum HOM05M003281 ORTHO05M003771 0.0e+00 2231.8 1148 100.0
Sspon.02G0051510-1C Saccharum spontaneum HOM05M003281 ORTHO05M003771 0.0e+00 2203.3 1148 97.2
Sobic.002G066800 Sorghum bicolor HOM05M003281 ORTHO05M003771 0.0e+00 2167.1 1158 96.7
Misin03G055700 Miscanthus sinensis HOM05M003281 ORTHO05M003771 0.0e+00 2135.5 1156 93.6
Zm00001eb302520 Zea mays B73 HOM05M003281 ORTHO05M003771 0.0e+00 2102.8 1158 91.6
Misin04G071900 Miscanthus sinensis HOM05M003281 ORTHO05M003771 0.0e+00 2101.2 1120 95.0
Pahal.2G062600 Panicum hallii HOM05M003281 ORTHO05M003771 0.0e+00 2016.1 1161 88.6
Sevir.2G072500 Setaria viridis HOM05M003281 ORTHO05M003771 0.0e+00 1984.5 1157 86.5
Seita.2G069700 Setaria italica HOM05M003281 ORTHO05M003771 0.0e+00 1972.6 1175 85.0
EJB05_14841 Eragrostis curvula HOM05M003281 ORTHO05M003771 0.0e+00 1945.2 1161 85.4
GWHGAORA009371 Cenchrus purpureus HOM05M003281 ORTHO05M003771 0.0e+00 1899.4 1156 83.4
Ot_Chr7_g23106 Oropetium thomaeum HOM05M003281 ORTHO05M003771 0.0e+00 1895.9 1166 83.1
Dexi2B01G0005540 Digitaria exilis HOM05M003281 ORTHO05M003771 0.0e+00 1892.5 1115 85.4
PH02Gene21957 Phyllostachys edulis HOM05M003281 ORTHO05M003771 0.0e+00 1892.1 1157 83.8
GWHGAORA046987 Cenchrus purpureus HOM05M003281 ORTHO05M003771 0.0e+00 1867.4 1159 82.8
Bradi1g54807 Brachypodium distachyon HOM05M003281 ORTHO05M003771 0.0e+00 1830.1 1160 79.7
OB07G14440 Oryza brachyantha HOM05M003281 ORTHO05M003771 0.0e+00 1819.3 1160 80.4
PH02Gene45356 Phyllostachys edulis HOM05M003281 ORTHO05M003771 0.0e+00 1810.4 1119 82.4
V3.Lp_chr2_0G10664 Lolium perenne HOM05M003281 ORTHO05M003771 0.0e+00 1803.9 1158 79.7
GWHGASIY006910 Secale cereale HOM05M003281 ORTHO05M003771 0.0e+00 1773.4 1147 79.0
AET2Gv20279200 Aegilops tauschii HOM05M003281 ORTHO05M003771 0.0e+00 1772.3 1152 79.3
TraesCS2D03G0297800 Triticum aestivum HOM05M003281 ORTHO05M003771 0.0e+00 1770.4 1152 79.2
TraesCS2A03G0283700 Triticum aestivum HOM05M003281 ORTHO05M003771 0.0e+00 1766.5 1152 78.9
TraesCS2B03G0393800 Triticum aestivum HOM05M003281 ORTHO05M003771 0.0e+00 1766.1 1152 78.9
Horvu_MOREX_2H01G162800 Hordeum vulgare HOM05M003281 ORTHO05M003771 0.0e+00 1762.7 1152 78.2
OsKitaake07g059900 Oryza sativa Kitaake HOM05M003281 ORTHO05M003771 0.0e+00 1758.4 1091 82.0
OsR498G0713672300.01 Oryza sativa ssp. indica HOM05M003281 ORTHO05M003771 0.0e+00 1758.4 1091 82.0
Os07g0191700 Oryza sativa ssp. japonica HOM05M003281 ORTHO05M003771 0.0e+00 1758.4 1091 82.0
Dexi2A01G0006060 Digitaria exilis HOM05M003281 ORTHO05M003771 0.0e+00 1692.6 1165 76.4
Zm00007a00009796 Zea mays B104 HOM05M003281 ORTHO05M003771 0.0e+00 1624.0 938 87.7
Aco017458 Ananas comosus HOM05M003281 ORTHO05M003771 0.0e+00 1620.5 1066 76.3
TRITD2Av1G039030 Triticum turgidum HOM05M003281 ORTHO05M003771 0.0e+00 1599.3 987 81.3
Ma05_g02880 Musa acuminata HOM05M003281 ORTHO05M003771 0.0e+00 1597.4 1061 74.2
V3.Lp_chr6_0G1582 Lolium perenne HOM05M003281 ORTHO05M003771 0.0e+00 1563.1 1042 75.3
Asa2G04602 Allium sativum HOM05M003281 ORTHO05M003771 0.0e+00 1528.1 1019 74.4
TRITD2Bv1G052460 Triticum turgidum HOM05M003281 ORTHO05M003771 0.0e+00 1526.9 997 79.2
p5.00_sc00136_p0028 Elaeis guineensis HOM05M003281 ORTHO05M003771 0.0e+00 1526.1 1193 66.5
GWHGAORA009372 Cenchrus purpureus HOM05M003281 ORTHO05M003771 0.0e+00 1494.6 942 81.2
Spipo0G0024400 Spirodela polyrhiza HOM05M003281 ORTHO05M003771 0.0e+00 1492.6 1037 71.7
Glyma.11G152960 Glycine max HOM05M003281 ORTHO05M003771 0.0e+00 1492.2 1162 65.8
evm.TU.AsparagusV1_03.1500.V1.1 Asparagus officinalis HOM05M003281 ORTHO05M003771 0.0e+00 1491.9 1020 73.0
GWHGAZTO090059 Oryza alta HOM05M003281 ORTHO05M003771 0.0e+00 1485.3 909 82.8
Bradi5g15631 Brachypodium distachyon HOM05M003281 ORTHO05M003771 0.0e+00 1483.4 1020 74.2
ATR1159G092 Amborella trichopoda HOM05M003281 ORTHO05M003771 0.0e+00 1467.6 1071 67.9
TraesCS1B03G1280600 Triticum aestivum HOM05M003281 ORTHO05M003771 0.0e+00 1461.0 1023 73.8
TRITD1Bv1G228470 Triticum turgidum HOM05M003281 ORTHO05M003771 0.0e+00 1461.0 1023 73.8
TRIDC1BG074490 Triticum dicoccoides HOM05M003281 ORTHO05M003771 0.0e+00 1459.5 1023 73.7
AT1G07910 Arabidopsis thaliana HOM05M003281 ORTHO05M003771 0.0e+00 1396.3 1063 65.6
DDU693G0586 Dioscorea dumetorum HOM05M003281 ORTHO05M003771 0.0e+00 1396.3 1234 62.1
DDU393G0001 Dioscorea dumetorum HOM05M003281 ORTHO05M003771 0.0e+00 1381.3 1234 61.7
Zosma01g18020 Zostera marina HOM05M003281 ORTHO05M003771 0.0e+00 1375.5 1157 61.7
TraesCS6A03G0310700 Triticum aestivum HOM05M003281 ORTHO05M003771 0.0e+00 1361.7 1021 69.7
V3.Lp_chr6_0G1596 Lolium perenne HOM05M003281 ORTHO05M003771 0.0e+00 1338.9 923 73.9
Potri.016G083100 Populus trichocarpa HOM05M003281 ORTHO05M003771 0.0e+00 1313.9 925 70.1
SEGI_33151 Sequoiadendron giganteum HOM05M003281 ORTHO05M003771 0.0e+00 1270.8 967 64.8
TRIDC2BG020830 Triticum dicoccoides HOM05M003281 ORTHO05M003771 0.0e+00 1163.3 669 85.7
CALSI_Maker00026233 Calamus simplicifolius HOM05M003281 ORTHO05M003771 0.0e+00 1131.3 1114 57.7
AagrBONN_evm.TU.Sc2ySwM_362.2654 Anthoceros agrestis HOM05M003281 ORTHO05M003771 4.6e-302 1040.8 1016 53.1
SMO223G0015 Selaginella moellendorffii HOM05M003281 ORTHO05M003771 1.1e-300 1036.2 1007 54.4
AagrBONN_evm.TU.Sc2ySwM_244.3 Anthoceros agrestis HOM05M003281 ORTHO05M003771 4.1e-295 1017.7 997 52.8
Mapoly0005s0012 Marchantia polymorpha HOM05M003281 ORTHO05M003771 3.6e-291 1004.6 1028 52.1
Pp3c27_2850 Physcomitrium patens HOM05M003281 ORTHO05M003771 1.7e-285 985.7 1020 50.7
Solyc11g072430.3 Solanum lycopersicum HOM05M003281 ORTHO05M003771 9.3e-279 963.4 653 73.8
Zjn_sc00051.1.g00670.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M003281 ORTHO05M003771 1.6e-278 962.6 619 79.2
AagrBONN_evm.TU.Sc2ySwM_341.1 Anthoceros agrestis HOM05M003281 ORTHO05M003771 1.5e-268 929.5 972 50.4
GWHGASIY023306 Secale cereale HOM05M003281 ORTHO05M003771 3.7e-267 924.9 602 78.7
TraesCS6B03G0156700 Triticum aestivum HOM05M003281 ORTHO05M003771 7.6e-265 917.1 600 78.7
TRIDC6BG008700 Triticum dicoccoides HOM05M003281 ORTHO05M003771 2.9e-264 915.2 600 78.5
AagrBONN_evm.TU.Sc2ySwM_117.4033 Anthoceros agrestis HOM05M003281 ORTHO05M003771 1.3e-259 899.8 972 49.6
Horvu_MOREX_6H01G057800 Hordeum vulgare HOM05M003281 ORTHO05M003771 6.3e-259 897.5 602 76.2
CBR_g39406 Chara braunii HOM05M003281 ORTHO05M003771 1.4e-245 853.2 1013 46.5
V3.Lp_chr4_0G12486 Lolium perenne HOM05M003281 ORTHO05M003771 1.5e-228 796.6 554 74.0
HPP92_010183 Vanilla planifolia HOM05M003281 ORTHO05M003771 1.6e-225 786.6 644 63.5
AagrBONN_evm.TU.Sc2ySwM_117.4029 Anthoceros agrestis HOM05M003281 ORTHO05M003771 5.0e-224 781.6 747 54.8
TraesCS4B03G0144200 Triticum aestivum HOM05M003281 ORTHO05M003771 4.7e-222 775.0 566 71.2
TRIDC4BG010190 Triticum dicoccoides HOM05M003281 ORTHO05M003771 4.7e-222 775.0 566 71.2
AagrBONN_evm.TU.Sc2ySwM_341.2 Anthoceros agrestis HOM05M003281 ORTHO05M003771 8.9e-213 744.2 730 53.8
CDE07G0291 Ceratophyllum demersum HOM05M003281 ORTHO05M003771 3.1e-210 735.7 578 64.2
AagrBONN_evm.TU.Sc2ySwM_117.4034 Anthoceros agrestis HOM05M003281 ORTHO05M003771 8.6e-208 727.6 730 53.2
AET1Gv21047700 Aegilops tauschii HOM05M003281 ORTHO05M003771 2.5e-207 726.1 468 77.8
TRIDC2AG017260 Triticum dicoccoides HOM05M003281 ORTHO05M003771 1.7e-187 660.2 373 86.3
TRITD6Bv1G015040 Triticum turgidum HOM05M003281 ORTHO05M003771 1.3e-171 607.4 351 85.8
TRIDC6AG006150 Triticum dicoccoides HOM05M003281 ORTHO05M003771 1.7e-171 607.1 407 77.6
GWHGAZTO042393 Oryza alta HOM05M003281 ORTHO05M003771 5.1e-168 595.5 500 65.0
CDE07G0939 Ceratophyllum demersum HOM05M003281 ORTHO05M003771 3.3e-167 592.8 410 69.3
AET6Gv20129500 Aegilops tauschii HOM05M003281 ORTHO05M003771 6.2e-166 588.6 343 83.4
AagrBONN_evm.TU.Sc2ySwM_246.1 Anthoceros agrestis HOM05M003281 ORTHO05M003771 4.6e-153 545.8 576 50.5
AagrBONN_evm.TU.Sc2ySwM_342.1 Anthoceros agrestis HOM05M003281 ORTHO05M003771 3.2e-138 496.5 636 43.9
AagrBONN_evm.TU.Sc2ySwM_245.2 Anthoceros agrestis HOM05M003281 ORTHO05M003771 6.7e-136 488.8 547 48.8
GWHGAZTO042394 Oryza alta HOM05M003281 ORTHO05M003771 4.2e-130 469.5 294 79.3
AET4Gv20136000 Aegilops tauschii HOM05M003281 ORTHO05M003771 2.7e-113 413.7 300 71.7
AagrBONN_evm.TU.Sc2ySwM_117.4032 Anthoceros agrestis HOM05M003281 ORTHO05M003771 3.4e-111 406.8 347 59.4
Zm00007a00009795 Zea mays B104 HOM05M003281 ORTHO05M003771 2.9e-107 393.7 255 82.4
HPP92_010123 Vanilla planifolia HOM05M001308 ORTHO05M001812 1.9e-90 337.8 265 60.0
Zjn_sc00584.1.g00010.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M003281 ORTHO05M003771 1.5e-87 328.2 197 81.2
CALSI_Maker00036638 Calamus simplicifolius HOM05M003281 ORTHO05M003771 2.0e-79 301.2 498 40.0
PH02Gene50817 Phyllostachys edulis HOM05M003281 ORTHO05M003771 1.7e-75 288.1 154 89.0
EJB05_47604 Eragrostis curvula HOM05M003281 ORTHO05M003771 5.6e-74 283.1 248 56.0
HPP92_010182 Vanilla planifolia HOM05M003281 ORTHO05M003771 2.6e-71 274.2 185 72.4
Sspon.02G0051510-2D Saccharum spontaneum HOM05M003281 ORTHO05M003771 3.9e-59 233.8 117 97.4
TRIDC5AG001280 Triticum dicoccoides HOM05M003281 ORTHO05M003771 1.2e-44 185.7 121 76.9
TRIDC6AG017620 Triticum dicoccoides HOM05M003281 ORTHO05M003771 2.1e-44 184.9 150 65.3
CALSI_Maker00036621 Calamus simplicifolius HOM05M003281 ORTHO05M003771 6.2e-41 173.3 120 74.2
AET6Gv20664100 Aegilops tauschii HOM05M003281 ORTHO05M003771 1.5e-34 152.1 109 66.1
TRIDC1AG065200 Triticum dicoccoides HOM05M003281 ORTHO05M003771 5.8e-31 140.2 77 85.7
Zm00007a00048550 Zea mays B104 HOM05M003281 ORTHO05M003771 5.8e-31 140.2 83 81.9
Sspon.04G0030360-1C Saccharum spontaneum HOM05M000002 ORTHO05M000002 2.3e-27 128.3 288 34.0
Zm00001eb134270 Zea mays B73 HOM05M003281 ORTHO05M003771 5.3e-24 117.1 69 84.1
Zjn_sc00051.1.g00675.1.br Zoysia japonica ssp. nagirizaki HOM05M003281 ORTHO05M003771 1.7e-17 95.5 179 40.8
Cre07.g352800 Chlamydomonas reinhardtii HOM05M003281 ORTHO05M003771 1.4e-16 92.4 253 32.0
TraesCS2A03G0695100 Triticum aestivum HOM05M003281 ORTHO05M003771 3.1e-16 91.3 158 36.1
TRITD2Av1G165420 Triticum turgidum HOM05M003281 ORTHO05M003771 3.1e-16 91.3 158 36.1
Zjn_sc02334.1.g00010.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M003281 ORTHO05M003771 3.8e-14 84.3 43 86.0
TRIDC2AG040360 Triticum dicoccoides HOM05M003281 ORTHO05M003771 2.3e-11 75.1 54 63.0
p5.00_sc00027_p0107 Elaeis guineensis HOM05M003281 ORTHO05M003771 2.2e-06 58.5 47 61.7
Glyma.11G172800 Glycine max HOM05M003281 ORTHO05M003771 2.2e-06 58.5 86 41.9


User provided reference genes

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