Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sspon.02G0003170-3C Saccharum spontaneum HOM05M007643 ORTHO05M009613 1.7e-82 308.9 156 100.0
Sspon.02G0003170-2B Saccharum spontaneum HOM05M007643 ORTHO05M009613 5.5e-81 303.9 156 98.7
Sevir.2G406400 Setaria viridis HOM05M007643 ORTHO05M009613 1.3e-66 256.1 157 86.0
Sspon.02G0003170-1A Saccharum spontaneum HOM05M007643 ORTHO05M009613 1.4e-57 226.1 113 99.1
Misin03G337500 Miscanthus sinensis HOM05M007643 ORTHO05M009613 4.2e-57 224.6 113 98.2
Sobic.002G379866 Sorghum bicolor HOM05M007643 ORTHO05M009613 1.2e-56 223.0 113 97.3
Misin04G361800 Miscanthus sinensis HOM05M007643 ORTHO05M009613 1.6e-56 222.6 113 97.3
Zm00007a00037619 Zea mays B104 HOM05M007643 ORTHO05M009613 2.1e-56 222.2 113 96.5
Zm00001eb327820 Zea mays B73 HOM05M007643 ORTHO05M009613 7.9e-56 220.3 113 96.5
Seita.2G395100 Setaria italica HOM05M007643 ORTHO05M009613 1.4e-55 219.5 113 94.7
GWHGAORA006290 Cenchrus purpureus HOM05M007643 ORTHO05M009613 1.8e-55 219.2 113 94.7
GWHGAORA049608 Cenchrus purpureus HOM05M007643 ORTHO05M009613 1.8e-55 219.2 113 94.7
GWHGAORA064739 Cenchrus purpureus HOM05M007643 ORTHO05M009613 1.8e-55 219.2 113 94.7
Ot_Chr7_g10527 Oropetium thomaeum HOM05M007643 ORTHO05M009613 5.1e-55 217.6 113 92.9
GWHGAZTO092615 Oryza alta HOM05M007643 ORTHO05M009613 6.7e-55 217.2 113 92.9
OsKitaake07g234400 Oryza sativa Kitaake HOM05M007643 ORTHO05M009613 6.7e-55 217.2 113 92.9
Os07g0622900 Oryza sativa ssp. japonica HOM05M007643 ORTHO05M009613 6.7e-55 217.2 113 92.9
Pahal.2G451600 Panicum hallii HOM05M007643 ORTHO05M009613 8.8e-55 216.9 113 93.8
OsR498G0714778600.01 Oryza sativa ssp. indica HOM05M007643 ORTHO05M009613 2.0e-54 215.7 113 92.0
EJB05_11141 Eragrostis curvula HOM05M007643 ORTHO05M009613 7.4e-54 213.8 113 92.0
AET2Gv20338500 Aegilops tauschii HOM05M007643 ORTHO05M009613 4.1e-52 208.0 146 72.6
Bradi1g21360 Brachypodium distachyon HOM05M007643 ORTHO05M009613 2.0e-51 205.7 113 87.6
Horvu_MOREX_2H01G199500 Hordeum vulgare HOM05M007643 ORTHO05M009613 1.7e-50 202.6 111 86.5
GWHGASIY007285 Secale cereale HOM05M007643 ORTHO05M009613 1.7e-50 202.6 111 86.5
TraesCS2A03G0339500 Triticum aestivum HOM05M007643 ORTHO05M009613 1.7e-50 202.6 111 86.5
TRITD2Av1G051450 Triticum turgidum HOM05M007643 ORTHO05M009613 1.7e-50 202.6 111 86.5
TraesCS2B03G0456000 Triticum aestivum HOM05M007643 ORTHO05M009613 6.5e-50 200.7 111 85.6
TRITD2Bv1G063160 Triticum turgidum HOM05M007643 ORTHO05M009613 6.5e-50 200.7 111 85.6
Zm00007a00036571 Zea mays B104 HOM05M007643 ORTHO05M009613 8.0e-48 193.7 97 95.9
TRIDC2AG020610 Triticum dicoccoides HOM05M007643 ORTHO05M009613 1.2e-43 179.9 96 86.5
Zjn_sc00044.1.g02170.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M007643 ORTHO05M009613 3.6e-40 168.3 96 89.6
TRIDC2BG024520 Triticum dicoccoides HOM05M007643 ORTHO05M009613 4.0e-39 164.9 86 86.0
Zm00001eb109640 Zea mays B73 HOM05M007643 ORTHO05M009613 3.4e-38 161.8 88 92.0
Dexi2A01G0033690 Digitaria exilis HOM05M007643 ORTHO05M009613 9.8e-38 160.2 84 95.2
Dexi2B01G0032430 Digitaria exilis HOM05M007643 ORTHO05M009613 9.8e-38 160.2 84 95.2
PH02Gene18217 Phyllostachys edulis HOM05M007643 ORTHO05M009613 6.3e-37 157.5 86 88.4
Zjn_sc00001.1.g03290.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M007643 ORTHO05M009613 4.1e-36 154.8 86 88.4
Ma02_g24060 Musa acuminata HOM05M007643 ORTHO05M009613 5.9e-35 151.0 113 64.6
Aco009561 Ananas comosus HOM05M007643 ORTHO05M009613 7.7e-35 150.6 113 65.5
Spipo0G0096300 Spirodela polyrhiza HOM05M007643 ORTHO05M009613 8.5e-34 147.1 113 63.7
Ma03_g01570 Musa acuminata HOM05M007643 ORTHO05M009613 3.4e-30 135.2 113 61.1
p5.00_sc00054_p0008 Elaeis guineensis HOM05M007643 ORTHO05M009613 5.7e-30 134.4 113 58.4
CDE03G0188 Ceratophyllum demersum HOM05M007643 ORTHO05M009613 1.2e-27 126.7 110 55.5
HPP92_005842 Vanilla planifolia HOM05M007643 ORTHO05M009613 1.2e-27 126.7 113 57.5
CDE06G2682 Ceratophyllum demersum HOM05M007643 ORTHO05M009613 2.7e-27 125.6 110 53.6
Ma08_g16160 Musa acuminata HOM05M007643 ORTHO05M009613 2.7e-27 125.6 113 54.0
TraesCS2D03G0356200 Triticum aestivum HOM05M007643 ORTHO05M009613 3.8e-26 121.7 101 67.3
MBI05_g37049_MAGBIO Magnolia biondii HOM05M007643 ORTHO05M009613 1.5e-25 119.8 112 50.9
Asa4G02285 Allium sativum HOM05M007643 ORTHO05M009613 7.3e-25 117.5 111 52.3
AT1G34640 Arabidopsis thaliana HOM05M007643 ORTHO05M009613 2.0e-22 109.4 112 45.5
Potri.002G096700 Populus trichocarpa HOM05M007643 ORTHO05M009613 9.2e-20 100.5 113 43.4
Solyc12g057030.2 Solanum lycopersicum HOM05M007643 ORTHO05M009613 1.6e-19 99.8 104 48.1
Glyma.04G102200 Glycine max HOM05M007643 ORTHO05M009613 2.0e-19 99.4 113 43.4
Glyma.06G103500 Glycine max HOM05M007643 ORTHO05M009613 3.5e-19 98.6 113 43.4
CALSI_Maker00037331 Calamus simplicifolius HOM05M007643 ORTHO05M009613 6.6e-18 94.4 82 58.5
DDU274G0175 Dioscorea dumetorum HOM05M007643 ORTHO05M009613 2.5e-17 92.4 72 61.1
SEGI_01546 Sequoiadendron giganteum HOM05M007643 ORTHO05M009613 1.6e-11 73.2 116 35.3


User provided reference genes

Program Settings