Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g038523.1 Solanum lycopersicum HOM05M006375 ORTHO05M007883 3.0e-57 224.2 113 100.0
AT5G60940 Arabidopsis thaliana HOM05M006375 ORTHO05M007883 4.0e-25 117.5 101 58.4
ATR0827G115 Amborella trichopoda HOM05M006375 ORTHO05M007883 3.4e-24 114.4 103 57.3
evm.TU.AsparagusV1_06.1972.V1.1 Asparagus officinalis HOM05M006375 ORTHO05M007883 4.4e-24 114.0 98 62.2
DDU219G0018 Dioscorea dumetorum HOM05M006375 ORTHO05M007883 4.1e-22 107.5 97 60.8
DDU565G0279 Dioscorea dumetorum HOM05M006375 ORTHO05M007883 4.1e-22 107.5 97 60.8
Glyma.06G205000 Glycine max HOM05M006375 ORTHO05M007883 4.1e-22 107.5 103 54.4
Aco017567 Ananas comosus HOM05M006375 ORTHO05M007883 7.1e-22 106.7 104 60.6
CDE10G1159 Ceratophyllum demersum HOM05M006375 ORTHO05M007883 1.0e-20 102.8 102 53.9
CALSI_Maker00018387 Calamus simplicifolius HOM05M006375 ORTHO05M007883 3.0e-20 101.3 129 50.4
Ma06_g36900 Musa acuminata HOM05M006375 ORTHO05M007883 2.5e-19 98.2 98 56.1
SMO358G0618 Selaginella moellendorffii HOM05M006375 ORTHO05M007883 2.3e-17 91.7 93 55.9
Pp3c18_4200 Physcomitrium patens HOM05M006375 ORTHO05M007883 5.2e-17 90.5 96 52.1
PH02Gene21699 Phyllostachys edulis HOM05M006375 ORTHO05M007883 8.9e-17 89.7 91 53.8
Spipo2G0083400 Spirodela polyrhiza HOM05M006375 ORTHO05M007883 1.2e-16 89.4 101 45.5
AagrBONN_evm.TU.Sc2ySwM_117.1929 Anthoceros agrestis HOM05M006375 ORTHO05M007883 9.9e-16 86.3 99 48.5
TraesCS5B03G0987700 Triticum aestivum HOM05M006375 ORTHO05M007883 1.3e-15 85.9 90 50.0
TRIDC5BG061260 Triticum dicoccoides HOM05M006375 ORTHO05M007883 1.3e-15 85.9 90 50.0
Mapoly0118s0024 Marchantia polymorpha HOM05M006375 ORTHO05M007883 2.9e-15 84.7 110 45.5
Zosma03g05190 Zostera marina HOM05M006375 ORTHO05M007883 2.9e-15 84.7 98 50.0
OB03G41560 Oryza brachyantha HOM05M006375 ORTHO05M007883 8.4e-15 83.2 109 48.6
V3.Lp_chr4_0G5256 Lolium perenne HOM05M006375 ORTHO05M007883 1.9e-14 82.0 99 51.5
TraesCS5A03G0936900 Triticum aestivum HOM05M006375 ORTHO05M007883 5.4e-14 80.5 90 50.0
OsKitaake03g343000 Oryza sativa Kitaake HOM05M006375 ORTHO05M007883 9.2e-14 79.7 98 49.0
OsR498G0307064900.01 Oryza sativa ssp. indica HOM05M006375 ORTHO05M007883 9.2e-14 79.7 98 49.0
Os03g0754900 Oryza sativa ssp. japonica HOM05M006375 ORTHO05M007883 9.2e-14 79.7 98 49.0
TraesCS5D03G0896000 Triticum aestivum HOM05M006375 ORTHO05M007883 3.5e-13 77.8 69 58.0
GWHGAZTO026744 Oryza alta HOM05M006375 ORTHO05M007883 4.6e-13 77.4 96 49.0
GWHGASIY028392 Secale cereale HOM05M006375 ORTHO05M007883 7.8e-13 76.6 69 56.5
Sspon.01G0028460-1A Saccharum spontaneum HOM05M006375 ORTHO05M007883 1.7e-12 75.5 101 47.5
Sspon.01G0028460-1P Saccharum spontaneum HOM05M006375 ORTHO05M007883 2.3e-12 75.1 103 46.6
Horvu_MOREX_5H01G570500 Hordeum vulgare HOM05M006375 ORTHO05M007883 5.1e-12 73.9 68 55.9
Misin01G060600 Miscanthus sinensis HOM05M006375 ORTHO05M007883 6.6e-12 73.6 100 47.0
Ot_Chr4_gn35427 Oropetium thomaeum HOM05M006375 ORTHO05M007883 8.6e-12 73.2 99 47.5
Zm00001eb057630 Zea mays B73 HOM05M006375 ORTHO05M007883 8.6e-12 73.2 100 47.0
Zm00007a00020239 Zea mays B104 HOM05M006375 ORTHO05M007883 8.6e-12 73.2 100 47.0
EJB05_04441 Eragrostis curvula HOM05M006375 ORTHO05M007883 2.5e-11 71.6 100 46.0
Sobic.001G085800 Sorghum bicolor HOM05M006375 ORTHO05M007883 3.3e-11 71.2 100 47.0
Dexi9A01G0008440 Digitaria exilis HOM05M006375 ORTHO05M007883 4.3e-11 70.9 99 47.5
Seita.9G088200 Setaria italica HOM05M006375 ORTHO05M007883 7.3e-11 70.1 100 45.0
Sevir.9G086600 Setaria viridis HOM05M006375 ORTHO05M007883 7.3e-11 70.1 100 45.0
Bradi1g08294 Brachypodium distachyon HOM05M006375 ORTHO05M007883 1.2e-10 69.3 69 53.6
Dexi9B01G0008010 Digitaria exilis HOM05M006375 ORTHO05M007883 1.2e-10 69.3 99 46.5
GWHGAORA019668 Cenchrus purpureus HOM05M006375 ORTHO05M007883 2.1e-10 68.6 100 44.0
Pahal.9G083900 Panicum hallii HOM05M006375 ORTHO05M007883 3.6e-10 67.8 100 44.0
GWHGASIY028381 Secale cereale HOM05M006375 ORTHO05M007883 4.7e-10 67.4 97 45.4
Zjn_sc00014.1.g04670.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M006375 ORTHO05M007883 1.4e-09 65.9 101 44.6
Sspon.01G0028460-2D Saccharum spontaneum HOM05M006375 ORTHO05M001138 1.2e-08 62.8 62 54.8
GWHGAZTO076638 Oryza alta HOM05M006375 ORTHO05M007883 1.5e-08 62.4 71 50.7


User provided reference genes

Program Settings