Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g150142.1 Solanum lycopersicum HOM05M007454 ORTHO05M009201 2.5e-54 214.5 116 100.0
CDE02G2705 Ceratophyllum demersum HOM05M007454 ORTHO05M009201 3.6e-21 104.4 69 82.6
MBI13_g01622_MAGBIO Magnolia biondii HOM05M007454 ORTHO05M009201 3.6e-21 104.4 69 84.1
Potri.009G071900 Populus trichocarpa HOM05M007454 ORTHO05M009201 8.0e-21 103.2 69 85.5
Spipo22G0004200 Spirodela polyrhiza HOM05M007454 ORTHO05M009201 8.0e-21 103.2 69 84.1
Potri.001G277100 Populus trichocarpa HOM05M007454 ORTHO05M009201 1.0e-20 102.8 69 84.1
Ma11_g18660 Musa acuminata HOM05M007454 ORTHO05M009201 1.4e-20 102.4 69 82.6
Solyc12g099705.1 Solanum lycopersicum HOM05M007454 ORTHO05M009201 1.8e-20 102.1 73 79.5
AagrBONN_evm.TU.Sc2ySwM_362.136 Anthoceros agrestis HOM05M007454 ORTHO05M009201 4.0e-20 100.9 69 79.7
Aco002339 Ananas comosus HOM05M007454 ORTHO05M009201 5.2e-20 100.5 69 81.2
Glyma.18G117700 Glycine max HOM05M007454 ORTHO05M009201 6.8e-20 100.1 69 81.2
CDE04G1776 Ceratophyllum demersum HOM05M002653 ORTHO05M002070 2.0e-19 98.6 87 66.7
Glyma.08G302200 Glycine max HOM05M007454 ORTHO05M009201 2.0e-19 98.6 69 79.7
Potri.003G197801 Populus trichocarpa HOM05M007454 ORTHO05M009201 3.4e-19 97.8 69 79.7
Potri.T125106 Populus trichocarpa HOM05M007454 ORTHO05M009201 3.4e-19 97.8 69 79.7
OsKitaake10g140600 Oryza sativa Kitaake HOM05M007454 ORTHO05M009201 9.8e-19 96.3 70 81.4
OsR498G1018955500.01 Oryza sativa ssp. indica HOM05M007454 ORTHO05M009201 9.8e-19 96.3 70 81.4
Asa0G04032 Allium sativum HOM05M007454 ORTHO05M009201 1.3e-18 95.9 69 75.4
Mapoly0046s0044 Marchantia polymorpha HOM05M007454 ORTHO05M009201 2.2e-18 95.1 69 81.2
Zosma01g36320 Zostera marina HOM05M007454 ORTHO05M009201 2.2e-18 95.1 70 77.1
HPP92_025477 Vanilla planifolia HOM05M007454 ORTHO05M009201 4.9e-18 94.0 69 76.8
Seita.9G210100 Setaria italica HOM05M007454 ORTHO05M009201 8.3e-18 93.2 70 77.1
Sevir.9G209200 Setaria viridis HOM05M007454 ORTHO05M009201 8.3e-18 93.2 70 77.1
GWHGAORA018414 Cenchrus purpureus HOM05M007454 ORTHO05M009201 2.4e-17 91.7 70 75.7
GWHGAORA018435 Cenchrus purpureus HOM05M007454 ORTHO05M009201 2.4e-17 91.7 70 75.7
AT3G07910 Arabidopsis thaliana HOM05M007454 ORTHO05M009201 3.1e-17 91.3 69 72.5
Bradi3g29610 Brachypodium distachyon HOM05M007454 ORTHO05M009201 3.1e-17 91.3 70 78.6
Misin11G244600 Miscanthus sinensis HOM05M007454 ORTHO05M009201 4.1e-17 90.9 70 77.1
Misin12G251600 Miscanthus sinensis HOM05M007454 ORTHO05M009201 4.1e-17 90.9 70 77.1
Sobic.006G242300 Sorghum bicolor HOM05M007454 ORTHO05M009201 4.1e-17 90.9 70 77.1
Ot_Chr1_gn31124 Oropetium thomaeum HOM05M007454 ORTHO05M009201 5.4e-17 90.5 70 75.7
Zm00001eb432230 Zea mays B73 HOM05M007454 ORTHO05M009201 5.4e-17 90.5 70 75.7
Zjn_sc00092.1.g01000.1.es.mkhc Zoysia japonica ssp. nagirizaki HOM05M007454 ORTHO05M009201 5.4e-17 90.5 66 78.8
Pahal.9G209800 Panicum hallii HOM05M007454 ORTHO05M009201 1.2e-16 89.4 70 75.7
AET1Gv20454200 Aegilops tauschii HOM05M007454 ORTHO05M009201 1.6e-16 89.0 67 74.6
SMO301G0059 Selaginella moellendorffii HOM05M007454 ORTHO05M009201 1.6e-16 89.0 69 72.5
TraesCS1A03G0452600 Triticum aestivum HOM05M007454 ORTHO05M009201 1.6e-16 89.0 67 74.6
TraesCS1D03G0447300 Triticum aestivum HOM05M007454 ORTHO05M009201 1.6e-16 89.0 67 74.6
Pp3c9_12820 Physcomitrium patens HOM05M007454 ORTHO05M009201 2.0e-16 88.6 68 67.6
EJB05_23956 Eragrostis curvula HOM05M007454 ORTHO05M009201 2.7e-16 88.2 70 74.3
EJB05_56824 Eragrostis curvula HOM05M007454 ORTHO05M009201 2.7e-16 88.2 70 74.3
Horvu_MOREX_1H01G277700 Hordeum vulgare HOM05M007454 ORTHO05M009201 3.5e-16 87.8 70 74.3
OB10G21200 Oryza brachyantha HOM05M007454 ORTHO05M009201 3.5e-16 87.8 54 85.2
TraesCS1B03G0544000 Triticum aestivum HOM05M007454 ORTHO05M009201 3.5e-16 87.8 70 74.3
TRIDC1BG030610 Triticum dicoccoides HOM05M007454 ORTHO05M009201 3.5e-16 87.8 70 74.3
TRITD1Av1G107750 Triticum turgidum HOM05M007454 ORTHO05M009201 3.5e-16 87.8 70 74.3
TRITD1Bv1G107490 Triticum turgidum HOM05M007454 ORTHO05M009201 3.5e-16 87.8 70 74.3
Pp3c15_6032 Physcomitrium patens HOM05M007454 ORTHO05M009201 1.1e-14 82.8 68 66.2
Glyma.04G138500 Glycine max HOM05M007454 ORTHO05M009201 2.5e-14 81.6 68 70.6
Sspon.05G0022140-1B Saccharum spontaneum HOM05M010922 ORTHO05M009201 2.8e-13 78.2 42 83.3
Dexi9A01G0019730 Digitaria exilis HOM05M007454 ORTHO05M009201 6.1e-13 77.0 42 81.0
Zm00001eb068350 Zea mays B73 HOM05M007454 ORTHO05M009201 3.0e-12 74.7 63 73.0
Misin01G190200 Miscanthus sinensis HOM05M007454 ORTHO05M009201 4.0e-12 74.3 63 61.9
Cre01.g010500 Chlamydomonas reinhardtii HOM05M007454 ORTHO05M009201 1.2e-11 72.8 70 45.7
Sobic.001G209900 Sorghum bicolor HOM05M007454 ORTHO05M009201 1.2e-11 72.8 68 57.4
MCO15G227 Micromonas commoda HOM05M007454 ORTHO05M009201 2.0e-11 72.0 63 61.9
ATR0745G066 Amborella trichopoda HOM05M007454 ORTHO05M009201 4.4e-11 70.9 70 62.9
PRCOL_00002293 Prasinoderma coloniale HOM05M007454 ORTHO05M009201 2.9e-10 68.2 68 50.0
GWHGASIY001960 Secale cereale HOM05M007454 ORTHO05M009201 1.4e-09 65.9 66 65.2
GWHGASIY001976 Secale cereale HOM05M007454 ORTHO05M009201 1.4e-09 65.9 66 65.2
Dexi9B01G0019320 Digitaria exilis HOM05M007454 ORTHO05M009201 1.2e-08 62.8 32 90.6


User provided reference genes

Program Settings