Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g073300.2 Solanum lycopersicum HOM05M006119 ORTHO05M007560 1.9e-201 704.9 358 100.0
Glyma.11G141400 Glycine max HOM05M006119 ORTHO05M007560 4.6e-152 540.8 355 76.6
MBI14_g18541_MAGBIO Magnolia biondii HOM05M006119 ORTHO05M007560 2.3e-151 538.5 358 77.9
Potri.001G237000 Populus trichocarpa HOM05M006119 ORTHO05M007560 5.1e-151 537.3 344 79.4
AT5G59960 Arabidopsis thaliana HOM05M006119 ORTHO05M007560 9.7e-150 533.1 348 76.4
DDU815G0001 Dioscorea dumetorum HOM05M006119 ORTHO05M007560 6.9e-148 526.9 347 75.2
Potri.009G028500 Populus trichocarpa HOM05M006119 ORTHO05M007560 5.0e-146 520.8 344 76.7
Glyma.12G064800 Glycine max HOM05M006119 ORTHO05M007560 1.1e-145 519.6 355 74.6
p5.00_sc00069_p0106 Elaeis guineensis HOM05M006119 ORTHO05M007560 2.5e-145 518.5 348 73.9
evm.TU.AsparagusV1_02.165.V1.1 Asparagus officinalis HOM05M006119 ORTHO05M007560 2.2e-141 505.4 346 73.1
HPP92_015526 Vanilla planifolia HOM05M006119 ORTHO05M007560 1.2e-139 499.6 353 72.0
OsKitaake01g035600 Oryza sativa Kitaake HOM05M006119 ORTHO05M007560 2.9e-138 495.0 352 70.5
OsR498G0100183900.01 Oryza sativa ssp. indica HOM05M006119 ORTHO05M007560 2.9e-138 495.0 352 70.5
Os01g0151600 Oryza sativa ssp. japonica HOM05M006119 ORTHO05M007560 2.9e-138 495.0 352 70.5
Ma06_g35060 Musa acuminata HOM05M006119 ORTHO05M007560 3.8e-138 494.6 348 71.6
Ma09_g04000 Musa acuminata HOM05M006119 ORTHO05M007560 6.5e-138 493.8 344 70.9
Zosma06g24850 Zostera marina HOM05M006119 ORTHO05M007560 8.5e-138 493.4 340 72.9
OB01G13240 Oryza brachyantha HOM05M006119 ORTHO05M007560 2.5e-137 491.9 352 69.9
Sobic.003G070700 Sorghum bicolor HOM05M006119 ORTHO05M007560 7.2e-137 490.3 350 68.9
Misin05G072300 Miscanthus sinensis HOM05M006119 ORTHO05M007560 7.9e-136 486.9 350 68.6
GWHGAORA033526 Cenchrus purpureus HOM05M006119 ORTHO05M007560 6.7e-135 483.8 357 66.9
Ot_Chr3_g07132 Oropetium thomaeum HOM05M006119 ORTHO05M007560 6.7e-135 483.8 352 68.5
GWHGAORA041555 Cenchrus purpureus HOM05M006119 ORTHO05M007560 1.5e-134 482.6 350 68.0
Sevir.5G102100 Setaria viridis HOM05M006119 ORTHO05M007560 1.5e-134 482.6 350 67.7
PH02Gene46570 Phyllostachys edulis HOM05M006119 ORTHO05M007560 4.4e-134 481.1 351 68.1
Bradi2g03370 Brachypodium distachyon HOM05M006119 ORTHO05M007560 5.7e-134 480.7 351 68.1
Pahal.5G474900 Panicum hallii HOM05M006119 ORTHO05M007560 7.4e-134 480.3 344 67.7
Horvu_MOREX_3H01G082400 Hordeum vulgare HOM05M006119 ORTHO05M007560 1.7e-133 479.2 351 67.5
V3.Lp_chr3_0G3162 Lolium perenne HOM05M006119 ORTHO05M007560 1.7e-133 479.2 351 68.1
AET3Gv20170000 Aegilops tauschii HOM05M006119 ORTHO05M007560 3.7e-133 478.0 352 67.6
TraesCS3D03G0151700 Triticum aestivum HOM05M006119 ORTHO05M007560 3.7e-133 478.0 352 67.6
TraesCS3A03G0168300 Triticum aestivum HOM05M006119 ORTHO05M007560 4.8e-133 477.6 352 67.3
TraesCS3B03G0211900 Triticum aestivum HOM05M006119 ORTHO05M007560 4.8e-133 477.6 351 67.5
TRIDC3AG009120 Triticum dicoccoides HOM05M006119 ORTHO05M007560 4.8e-133 477.6 352 67.3
TRIDC3BG012820 Triticum dicoccoides HOM05M006119 ORTHO05M007560 4.8e-133 477.6 351 67.5
TRITD3Av1G021320 Triticum turgidum HOM05M006119 ORTHO05M007560 4.8e-133 477.6 352 67.3
Zm00001eb124290 Zea mays B73 HOM05M006119 ORTHO05M007560 4.8e-133 477.6 345 67.5
GWHGASIY001553 Secale cereale HOM05M006119 ORTHO05M007560 6.3e-133 477.2 351 68.1
GWHGASIY013035 Secale cereale HOM05M006119 ORTHO05M007560 6.3e-133 477.2 351 68.1
Zm00007a00017608 Zea mays B104 HOM05M006119 ORTHO05M007560 1.7e-130 469.2 350 66.0
CALSI_Maker00018421 Calamus simplicifolius HOM05M006119 ORTHO05M007560 1.1e-124 449.9 351 67.0
GWHGAZTO053285 Oryza alta HOM05M006119 ORTHO05M007560 2.0e-123 445.7 324 68.5
Spipo23G0022200 Spirodela polyrhiza HOM05M006119 ORTHO05M007560 8.5e-122 440.3 274 75.9
Seita.5G104400 Setaria italica HOM05M006119 ORTHO05M007560 8.0e-120 433.7 296 69.3
EJB05_31560 Eragrostis curvula HOM05M006119 ORTHO05M007560 8.8e-119 430.3 371 60.4
CDE07G1169 Ceratophyllum demersum HOM05M006119 ORTHO05M007560 8.3e-117 423.7 348 65.8
ATR0559G318 Amborella trichopoda HOM05M006119 ORTHO05M007560 5.0e-114 414.5 300 70.3
Asa3G01265 Allium sativum HOM05M006119 ORTHO05M007560 1.8e-111 406.0 300 69.3
Pp3c8_24390 Physcomitrium patens HOM05M006119 ORTHO05M007560 1.8e-103 379.4 342 55.0
Pp3c24_20310 Physcomitrium patens HOM05M006119 ORTHO05M007560 4.4e-102 374.8 342 55.0
GWHGAZTO041220 Oryza alta HOM05M006119 ORTHO05M007560 4.9e-101 371.3 351 56.4
Aco017634 Ananas comosus HOM05M006119 ORTHO05M007560 3.2e-100 368.6 394 55.1
SMO118G0033 Selaginella moellendorffii HOM05M006119 ORTHO05M007560 1.0e-98 363.6 327 57.2
Sspon.03G0020520-3C Saccharum spontaneum HOM05M006119 ORTHO05M007560 1.5e-97 359.8 293 64.2
Dexi5B01G0006890 Digitaria exilis HOM05M006119 ORTHO05M007560 3.1e-95 352.1 242 70.7
Mapoly0001s0555 Marchantia polymorpha HOM05M006119 ORTHO05M007560 5.2e-95 351.3 342 52.3
Asa3G01165 Allium sativum HOM05M006119 ORTHO05M007560 4.9e-93 344.7 246 69.1
Sspon.03G0020520-1A Saccharum spontaneum HOM05M006119 ORTHO05M007560 3.2e-92 342.0 332 54.5
AagrBONN_evm.TU.Sc2ySwM_344.5355 Anthoceros agrestis HOM05M006119 ORTHO05M007560 8.1e-88 327.4 294 53.4
Sspon.03G0020520-2B Saccharum spontaneum HOM05M006119 ORTHO05M007560 2.6e-86 322.4 293 59.0
CBR_g46654 Chara braunii HOM05M006119 ORTHO05M007560 2.3e-79 299.3 318 48.1
DDU743G0171 Dioscorea dumetorum HOM05M006119 ORTHO05M007560 1.0e-58 230.7 248 55.2
Sspon.03G0020520-4D Saccharum spontaneum HOM05M000063 ORTHO05M001529 5.3e-55 218.4 327 42.5
EJB05_31561 Eragrostis curvula HOM05M006119 ORTHO05M007560 5.6e-49 198.4 199 57.8
Asa2G01730 Allium sativum HOM05M006119 ORTHO05M007560 2.1e-40 169.9 177 53.1
Asa2G06988 Allium sativum HOM05M006119 ORTHO05M007560 2.1e-40 169.9 177 53.1
Asa7G07651 Allium sativum HOM05M006119 ORTHO05M007560 2.1e-40 169.9 177 53.1
Zjn_sc00011.1.g04500.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M006119 ORTHO05M007560 4.8e-32 142.1 308 31.8
PH02Gene50512 Phyllostachys edulis HOM05M006119 ORTHO05M007560 6.3e-24 115.2 79 72.2
Zjn_sc00005.1.g05780.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M006119 ORTHO05M007560 2.1e-19 100.1 388 25.5
Asa2G02366 Allium sativum HOM05M006119 ORTHO05M007560 4.7e-11 72.4 63 58.7
Asa3G01125 Allium sativum HOM05M006119 ORTHO05M007560 6.1e-11 72.0 63 58.7
EJB05_31557 Eragrostis curvula HOM05M006119 ORTHO05M007560 8.2e-08 61.6 67 56.7


User provided reference genes

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