Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g073240.2 Solanum lycopersicum HOM05M005301 ORTHO05M006313 8.9e-118 426.4 250 100.0
Potri.006G217400 Populus trichocarpa HOM05M005301 ORTHO05M006313 4.7e-42 174.9 257 51.8
Glyma.17G043500 Glycine max HOM05M005301 ORTHO05M006313 1.8e-38 162.9 121 72.7
Glyma.13G116300 Glycine max HOM05M005301 ORTHO05M006313 2.4e-38 162.5 121 72.7
SEGI_31971 Sequoiadendron giganteum HOM05M005301 ORTHO05M006313 2.9e-36 155.6 112 71.4
AT3G43520 Arabidopsis thaliana HOM05M005301 ORTHO05M006313 5.0e-36 154.8 115 66.1
Sobic.006G244900 Sorghum bicolor HOM05M005301 ORTHO05M006313 1.5e-35 153.3 119 66.4
ATR0006G051 Amborella trichopoda HOM05M005301 ORTHO05M006313 5.5e-35 151.4 115 71.3
Bradi5g24397 Brachypodium distachyon HOM05M005301 ORTHO05M006313 7.2e-35 151.0 120 66.7
Zm00001eb068040 Zea mays B73 HOM05M005301 ORTHO05M006313 9.4e-35 150.6 107 73.8
Zm00007a00023360 Zea mays B104 HOM05M005301 ORTHO05M006313 9.4e-35 150.6 107 73.8
Aco026629 Ananas comosus HOM05M005301 ORTHO05M006313 1.2e-34 150.2 120 65.8
Misin11G243300 Miscanthus sinensis HOM05M005301 ORTHO05M006313 1.2e-34 150.2 112 68.8
Misin12G254500 Miscanthus sinensis HOM05M005301 ORTHO05M006313 1.2e-34 150.2 112 68.8
EJB05_39962 Eragrostis curvula HOM05M005301 ORTHO05M006313 1.6e-34 149.8 158 70.9
CALSI_Maker00029949 Calamus simplicifolius HOM05M005301 ORTHO05M006313 2.1e-34 149.4 185 56.8
PH02Gene00457 Phyllostachys edulis HOM05M005301 ORTHO05M006313 2.1e-34 149.4 179 62.6
p5.00_sc00064_p0007 Elaeis guineensis HOM05M005301 ORTHO05M006313 2.7e-34 149.1 114 67.5
AET2Gv21113300 Aegilops tauschii HOM05M005301 ORTHO05M006313 3.6e-34 148.7 119 67.2
TraesCS2D03G1131400 Triticum aestivum HOM05M005301 ORTHO05M006313 3.6e-34 148.7 119 67.2
Zjn_sc00023.1.g04980.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M005301 ORTHO05M006313 3.6e-34 148.7 158 67.7
Ot_Chr6_g01910 Oropetium thomaeum HOM05M005301 ORTHO05M006313 4.7e-34 148.3 158 64.6
Asa4G01042 Allium sativum HOM05M005301 ORTHO05M006313 6.1e-34 147.9 108 71.3
V3.Lp_scaffold_290G40 Lolium perenne HOM05M005301 ORTHO05M006313 6.1e-34 147.9 107 72.0
OB04G34740 Oryza brachyantha HOM05M005301 ORTHO05M006313 8.0e-34 147.5 107 72.9
p5.00_sc00004_p0209 Elaeis guineensis HOM05M005301 ORTHO05M006313 1.0e-33 147.1 121 65.3
OsKitaake04g289600 Oryza sativa Kitaake HOM05M005301 ORTHO05M006313 1.0e-33 147.1 107 71.0
Os04g0653100 Oryza sativa ssp. japonica HOM05M005301 ORTHO05M006313 1.0e-33 147.1 107 71.0
TraesCS2B03G1339800 Triticum aestivum HOM05M005301 ORTHO05M006313 1.4e-33 146.7 190 57.9
TRITD2Bv1G236750 Triticum turgidum HOM05M005301 ORTHO05M006313 1.4e-33 146.7 190 57.9
HPP92_002368 Vanilla planifolia HOM05M005301 ORTHO05M006313 1.4e-33 146.7 120 65.0
HPP92_027595 Vanilla planifolia HOM05M005301 ORTHO05M006313 1.4e-33 146.7 113 67.3
GWHGAZTO031846 Oryza alta HOM05M005301 ORTHO05M006313 1.8e-33 146.4 107 71.0
Horvu_MOREX_2H01G697600 Hordeum vulgare HOM05M005301 ORTHO05M006313 4.0e-33 145.2 107 70.1
PH02Gene33653 Phyllostachys edulis HOM05M005301 ORTHO05M006313 4.0e-33 145.2 179 59.2
TraesCS2A03G1177800 Triticum aestivum HOM05M005301 ORTHO05M006313 4.0e-33 145.2 107 70.1
TRIDC2AG071330 Triticum dicoccoides HOM05M005301 ORTHO05M006313 4.0e-33 145.2 107 70.1
TRIDC2BG077130 Triticum dicoccoides HOM05M005301 ORTHO05M006313 4.0e-33 145.2 179 60.9
TRITD2Av1G273420 Triticum turgidum HOM05M005301 ORTHO05M006313 4.0e-33 145.2 107 70.1
Zjn_sc00004.1.g12100.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M005301 ORTHO05M006313 8.8e-33 144.1 158 62.0
Pp3c23_11420 Physcomitrium patens HOM05M005301 ORTHO05M006313 1.2e-32 143.7 112 67.0
evm.TU.AsparagusV1_08.2628.V1.1 Asparagus officinalis HOM05M005301 ORTHO05M006313 1.5e-32 143.3 108 71.3
Ma05_g26430 Musa acuminata HOM05M005301 ORTHO05M006313 1.5e-32 143.3 175 60.6
HPP92_010993 Vanilla planifolia HOM05M005301 ORTHO05M006313 1.5e-32 143.3 117 65.0
CALSI_Maker00034766 Calamus simplicifolius HOM05M005301 ORTHO05M006313 2.0e-32 142.9 106 68.9
Sspon.05G0031510-1P Saccharum spontaneum HOM05M005301 ORTHO05M006313 2.0e-32 142.9 103 70.9
Sspon.05G0031510-2D Saccharum spontaneum HOM05M005301 ORTHO05M006313 2.0e-32 142.9 103 70.9
GWHGASIY011256 Secale cereale HOM05M005301 ORTHO05M006313 2.0e-32 142.9 190 55.8
Sspon.05G0031510-1C Saccharum spontaneum HOM05M005301 ORTHO05M006313 3.4e-32 142.1 103 70.9
Seita.3G034100 Setaria italica HOM05M005301 ORTHO05M006313 4.4e-32 141.7 103 70.9
Sevir.3G035000 Setaria viridis HOM05M005301 ORTHO05M006313 4.4e-32 141.7 103 70.9
Dexi7A01G0021350 Digitaria exilis HOM05M005301 ORTHO05M006313 5.7e-32 141.4 103 70.9
Pahal.7G319200 Panicum hallii HOM05M005301 ORTHO05M006313 5.7e-32 141.4 103 70.9
GWHGAORA063421 Cenchrus purpureus HOM05M005301 ORTHO05M006313 1.3e-31 140.2 103 69.9
GWHGAORA021006 Cenchrus purpureus HOM05M005301 ORTHO05M006313 1.7e-31 139.8 103 69.9
Zosma03g03880 Zostera marina HOM05M005301 ORTHO05M006313 2.4e-30 136.0 114 64.0
Zosma1395g00010 Zostera marina HOM05M005301 ORTHO05M006313 5.4e-30 134.8 105 67.6
MBI13_g09074_MAGBIO Magnolia biondii HOM05M005301 ORTHO05M006313 2.0e-29 132.9 112 58.9
AT2G26240 Arabidopsis thaliana HOM05M005301 ORTHO05M006313 4.5e-29 131.7 108 64.8
MBI13_g05972_MAGBIO Magnolia biondii HOM05M005301 ORTHO05M006313 4.5e-29 131.7 194 53.1
Ma03_g05560 Musa acuminata HOM05M005301 ORTHO05M006313 4.5e-29 131.7 108 65.7
Spipo0G0037100 Spirodela polyrhiza HOM05M005301 ORTHO05M006313 3.8e-28 128.6 128 57.8
SMO347G0418 Selaginella moellendorffii HOM05M005301 ORTHO05M006313 6.5e-28 127.9 113 61.1
Pp3c23_5560 Physcomitrium patens HOM05M005301 ORTHO05M006313 8.5e-28 127.5 111 62.2
CDE11G0474 Ceratophyllum demersum HOM05M005301 ORTHO05M006313 1.1e-27 127.1 116 55.2
AagrBONN_evm.TU.Sc2ySwM_344.3815 Anthoceros agrestis HOM05M005301 ORTHO05M006313 7.2e-27 124.4 102 61.8
DDU539G0037 Dioscorea dumetorum HOM05M005301 ORTHO05M006313 1.6e-26 123.2 90 70.0
GWHGAORA063418 Cenchrus purpureus HOM05M005301 ORTHO05M006313 6.8e-25 117.9 87 67.8
SEGI_36327 Sequoiadendron giganteum HOM05M005301 ORTHO05M006313 2.6e-24 115.9 90 65.6
SMO351G0348 Selaginella moellendorffii HOM05M005301 ORTHO05M006313 9.8e-24 114.0 103 55.3
Misin07G117400 Miscanthus sinensis HOM05M005301 ORTHO05M006313 2.2e-23 112.8 87 64.4
CDE05G1879 Ceratophyllum demersum HOM05M005301 ORTHO05M006313 1.1e-22 110.5 97 58.8
Mapoly0059s0086 Marchantia polymorpha HOM05M005301 ORTHO05M006313 4.5e-21 105.1 95 57.9
CBR_g16036 Chara braunii HOM05M005301 ORTHO05M006313 4.9e-15 85.1 105 43.8
Zm00001eb432380 Zea mays B73 HOM05M005301 ORTHO05M006313 2.1e-10 69.7 64 62.5
Zm00007a00000769 Zea mays B104 HOM05M005301 ORTHO05M006313 1.8e-09 66.6 62 61.3
Asa4G05484 Allium sativum HOM05M003444 ORTHO05M004006 6.8e-09 64.7 101 43.6
Misin01G169200 Miscanthus sinensis HOM05M003444 ORTHO05M004006 1.3e-07 60.5 101 42.6
Sspon.01G0044570-1B Saccharum spontaneum HOM05M003444 ORTHO05M004006 1.3e-07 60.5 101 42.6
Sspon.01G0044570-2C Saccharum spontaneum HOM05M003444 ORTHO05M004006 1.3e-07 60.5 101 42.6
Zm00001eb048800 Zea mays B73 HOM05M003444 ORTHO05M004006 1.3e-07 60.5 101 42.6
Zm00007a00042612 Zea mays B104 HOM05M003444 ORTHO05M004006 1.3e-07 60.5 101 42.6
AT1G50740 Arabidopsis thaliana HOM05M003444 ORTHO05M004006 1.7e-07 60.1 102 38.2
Dexi9B01G0017310 Digitaria exilis HOM05M003444 ORTHO05M004006 1.7e-07 60.1 101 42.6
Pahal.9G181500 Panicum hallii HOM05M003444 ORTHO05M004006 1.7e-07 60.1 101 42.6
TRITD7Bv1G039660 Triticum turgidum HOM05M003444 ORTHO05M004006 1.7e-07 60.1 101 41.6
AET7Gv20485500 Aegilops tauschii HOM05M003444 ORTHO05M004006 2.2e-07 59.7 101 41.6
GWHGAORA051940 Cenchrus purpureus HOM05M003444 ORTHO05M004006 2.2e-07 59.7 101 41.6
Horvu_MOREX_7H01G218300 Hordeum vulgare HOM05M003444 ORTHO05M004006 2.2e-07 59.7 101 41.6
Sspon.01G0044570-3D Saccharum spontaneum HOM05M003444 ORTHO05M004006 2.2e-07 59.7 101 42.6
TraesCS7A03G0443200 Triticum aestivum HOM05M003444 ORTHO05M004006 2.2e-07 59.7 101 41.6
TraesCS7D03G0428300 Triticum aestivum HOM05M003444 ORTHO05M004006 2.2e-07 59.7 101 41.6
TRIDC7AG023690 Triticum dicoccoides HOM05M003444 ORTHO05M004006 2.2e-07 59.7 101 41.6
TRITD7Av1G062920 Triticum turgidum HOM05M003444 ORTHO05M004006 2.2e-07 59.7 101 41.6
Zosma05g20210 Zostera marina HOM05M003444 ORTHO05M004006 2.2e-07 59.7 102 40.2
GWHGAORA018686 Cenchrus purpureus HOM05M003444 ORTHO05M004006 2.9e-07 59.3 101 42.6
CDE11G1067 Ceratophyllum demersum HOM05M003444 ORTHO05M004006 2.9e-07 59.3 102 40.2
Ot_Chr4_g26843 Oropetium thomaeum HOM05M003444 ORTHO05M004006 2.9e-07 59.3 102 40.2
Seita.9G184400 Setaria italica HOM05M003444 ORTHO05M004006 2.9e-07 59.3 101 42.6
Sevir.9G183300 Setaria viridis HOM05M003444 ORTHO05M004006 2.9e-07 59.3 101 42.6
CDE05G3279 Ceratophyllum demersum HOM05M003444 ORTHO05M004006 3.7e-07 58.9 102 40.2
Dexi9A01G0017610 Digitaria exilis HOM05M003444 ORTHO05M004006 3.7e-07 58.9 101 41.6
Ma03_g05610 Musa acuminata HOM05M005301 ORTHO05M006313 3.7e-07 58.9 43 69.8
Solyc10g006310.3 Solanum lycopersicum HOM05M003444 ORTHO05M004006 3.7e-07 58.9 106 38.7
Bradi1g15760 Brachypodium distachyon HOM05M003444 ORTHO05M004006 4.9e-07 58.5 101 41.6
Potri.011G138100 Populus trichocarpa HOM05M003444 ORTHO05M004006 4.9e-07 58.5 101 38.6
MBI18_g42744_MAGBIO Magnolia biondii HOM05M003444 ORTHO05M004006 8.3e-07 57.8 96 38.5
GWHGAZTO025078 Oryza alta HOM05M003444 ORTHO05M004006 8.3e-07 57.8 121 35.5
TraesCS7B03G0252100 Triticum aestivum HOM05M003444 ORTHO05M004006 8.3e-07 57.8 101 40.6
OsKitaake03g233900 Oryza sativa Kitaake HOM05M003444 ORTHO05M004006 1.1e-06 57.4 101 40.6
Os03g0568500 Oryza sativa ssp. japonica HOM05M003444 ORTHO05M004006 1.1e-06 57.4 101 40.6
CALSI_Maker00006858 Calamus simplicifolius HOM05M003444 ORTHO05M004006 1.9e-06 56.6 102 37.3
Ma03_g05130 Musa acuminata HOM05M005301 ORTHO05M006313 3.2e-06 55.8 47 61.7
AT3G20510 Arabidopsis thaliana HOM05M003444 ORTHO05M004006 9.2e-06 54.3 101 36.6
p5.00_sc00038_p0090 Elaeis guineensis HOM05M003444 ORTHO05M004006 9.2e-06 54.3 102 38.2
Potri.001G424000 Populus trichocarpa HOM05M003444 ORTHO05M004006 9.2e-06 54.3 101 38.6


User provided reference genes

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