Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g072890.1 Solanum lycopersicum HOM05M005905 ORTHO05M006703 4.2e-78 293.9 154 100.0
Glyma.03G175100 Glycine max HOM05M005905 ORTHO05M006703 2.4e-33 145.2 156 53.2
Glyma.19G175800 Glycine max HOM05M005905 ORTHO05M006703 2.7e-32 141.7 156 54.5
MBI14_g21098_MAGBIO Magnolia biondii HOM05M005905 ORTHO05M006703 8.7e-31 136.7 158 51.3
Potri.016G081600 Populus trichocarpa HOM05M005905 ORTHO05M006703 1.9e-30 135.6 155 52.9
Glyma.13G134700 Glycine max HOM05M005905 ORTHO05M006703 1.3e-29 132.9 152 51.3
Potri.006G215000 Populus trichocarpa HOM05M005905 ORTHO05M006703 2.4e-28 128.6 160 47.5
Glyma.10G046800 Glycine max HOM05M005905 ORTHO05M006703 9.0e-28 126.7 155 49.0
MBI05_g32634_MAGBIO Magnolia biondii HOM05M005905 ORTHO05M006703 9.0e-28 126.7 154 55.2
AT5G02640 Arabidopsis thaliana HOM05M005905 ORTHO05M006703 2.7e-24 115.2 166 48.8
ATR0759G110 Amborella trichopoda HOM05M005905 ORTHO05M006703 5.1e-23 110.9 152 44.7
Aco001501 Ananas comosus HOM05M005905 ORTHO05M006703 2.1e-21 105.5 194 40.2
Ma09_g04100 Musa acuminata HOM05M005905 ORTHO05M006703 2.1e-21 105.5 175 42.3
Ma08_g21770 Musa acuminata HOM05M005905 ORTHO05M006703 2.8e-21 105.1 168 42.3
CALSI_Maker00036153 Calamus simplicifolius HOM05M005905 ORTHO05M006703 8.1e-21 103.6 180 41.7
Ma06_g16970 Musa acuminata HOM05M005905 ORTHO05M006703 1.4e-20 102.8 179 40.8
DDU610G0015 Dioscorea dumetorum HOM05M000196 ORTHO05M006703 5.3e-20 100.9 139 48.9
p5.00_sc00069_p0160 Elaeis guineensis HOM05M005905 ORTHO05M006703 6.9e-20 100.5 174 43.7
p5.00_sc00099_p0125 Elaeis guineensis HOM05M005905 ORTHO05M006703 6.9e-20 100.5 175 44.0
DDU256G0716 Dioscorea dumetorum HOM05M000196 ORTHO05M000137 9.0e-20 100.1 139 47.5
CALSI_Maker00033406 Calamus simplicifolius HOM05M005905 ORTHO05M006703 2.0e-19 99.0 169 44.4
Ma10_g05520 Musa acuminata HOM05M005905 ORTHO05M006703 2.6e-19 98.6 197 37.6
p5.00_sc00003_p0112 Elaeis guineensis HOM05M005905 ORTHO05M006703 3.4e-19 98.2 160 43.8
Glyma.13G331100 Glycine max HOM05M005905 ORTHO05M006703 4.5e-19 97.8 152 38.8
SEGI_24546 Sequoiadendron giganteum HOM05M005905 ORTHO05M006703 7.6e-19 97.1 156 40.4
HPP92_012460 Vanilla planifolia HOM05M005905 ORTHO05M006703 9.9e-19 96.7 169 40.2
Aco010995 Ananas comosus HOM05M005905 ORTHO05M006703 4.9e-18 94.4 186 38.7
evm.TU.AsparagusV1_07.324.V1.1 Asparagus officinalis HOM05M005905 ORTHO05M006703 4.9e-18 94.4 153 45.1
Ma10_g01190 Musa acuminata HOM05M005905 ORTHO05M006703 4.9e-18 94.4 173 39.3
DDU059G0114 Dioscorea dumetorum HOM05M003986 ORTHO05M005010 1.9e-17 92.4 114 51.8
Spipo22G0034800 Spirodela polyrhiza HOM05M003986 ORTHO05M005010 9.3e-17 90.1 139 41.7
Spipo29G0020500 Spirodela polyrhiza HOM05M005905 ORTHO05M006703 9.3e-17 90.1 157 42.0
GWHGASIY000523 Secale cereale HOM05M005905 ORTHO05M006703 1.6e-16 89.4 210 38.1
TRIDC1BG008380 Triticum dicoccoides HOM05M005905 ORTHO05M006703 2.1e-16 89.0 213 37.1
TRITD1Bv1G016660 Triticum turgidum HOM05M005905 ORTHO05M006703 2.1e-16 89.0 213 37.1
Horvu_MOREX_1H01G062800 Hordeum vulgare HOM05M005905 ORTHO05M006703 2.7e-16 88.6 210 37.1
Ma07_g15260 Musa acuminata HOM05M005905 ORTHO05M006703 6.0e-16 87.4 178 36.0
Ot_Chr5_g15355 Oropetium thomaeum HOM05M005905 ORTHO05M006703 6.0e-16 87.4 219 33.8
SEGI_03855 Sequoiadendron giganteum HOM05M005905 ORTHO05M006703 6.0e-16 87.4 153 37.3
Sspon.07G0027930-1B Saccharum spontaneum HOM05M005905 ORTHO05M006703 7.9e-16 87.0 237 32.1
Ma10_g13560 Musa acuminata HOM05M005905 ORTHO05M006703 1.0e-15 86.7 156 41.0
GWHGAORA004606 Cenchrus purpureus HOM05M005905 ORTHO05M006703 1.8e-15 85.9 230 30.4
OsKitaake05g015600 Oryza sativa Kitaake HOM05M005905 ORTHO05M006703 2.3e-15 85.5 215 32.1
Os05g0120300 Oryza sativa ssp. japonica HOM05M005905 ORTHO05M006703 2.3e-15 85.5 215 32.1
Zjn_sc00016.1.g05710.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M005905 ORTHO05M006703 2.3e-15 85.5 224 33.0
Dexi3A01G0009350 Digitaria exilis HOM05M005905 ORTHO05M006703 3.9e-15 84.7 223 31.4
V3.Lp_chr1_0G1458 Lolium perenne HOM05M005905 ORTHO05M006703 3.9e-15 84.7 217 36.4
Seita.3G042200 Setaria italica HOM05M005905 ORTHO05M006703 3.9e-15 84.7 230 30.9
Sevir.3G043100 Setaria viridis HOM05M005905 ORTHO05M006703 3.9e-15 84.7 230 30.9
AET1Gv20118400 Aegilops tauschii HOM05M005905 ORTHO05M006703 6.7e-15 84.0 214 36.4
TraesCS1D03G0106000 Triticum aestivum HOM05M005905 ORTHO05M006703 6.7e-15 84.0 214 36.4
GWHGAORA039588 Cenchrus purpureus HOM05M005905 ORTHO05M006703 8.7e-15 83.6 229 31.4
TraesCS1B03G0157100 Triticum aestivum HOM05M005905 ORTHO05M006703 8.7e-15 83.6 214 36.4
TraesCS1A03G0117300 Triticum aestivum HOM05M005905 ORTHO05M006703 1.1e-14 83.2 216 36.1
TRIDC1AG006510 Triticum dicoccoides HOM05M005905 ORTHO05M006703 1.1e-14 83.2 216 36.1
TRITD1Av1G012850 Triticum turgidum HOM05M005905 ORTHO05M006703 1.1e-14 83.2 216 36.1
Pahal.3G098200 Panicum hallii HOM05M005905 ORTHO05M006703 3.3e-14 81.6 232 30.2
AT3G46300 Arabidopsis thaliana HOM05M005905 ORTHO05M006703 9.6e-14 80.1 156 38.5
Dexi3B01G0009450 Digitaria exilis HOM05M005905 ORTHO05M006703 9.6e-14 80.1 228 30.3
Bradi2g37610 Brachypodium distachyon HOM05M005905 ORTHO05M006703 1.3e-13 79.7 87 51.7
GWHGAZTO081542 Oryza alta HOM05M005905 ORTHO05M006703 1.6e-13 79.3 220 33.2
CDE09G0663 Ceratophyllum demersum HOM05M004446 ORTHO05M006703 4.8e-13 77.8 92 48.9
Misin17G024900 Miscanthus sinensis HOM05M005905 ORTHO05M006703 4.8e-13 77.8 243 29.2
Sobic.009G021700 Sorghum bicolor HOM05M005905 ORTHO05M006703 4.8e-13 77.8 243 32.9
HPP92_006589 Vanilla planifolia HOM05M005905 ORTHO05M006703 8.2e-13 77.0 103 46.6
Zm00007a00028822 Zea mays B104 HOM05M005905 ORTHO05M006703 1.8e-12 75.9 235 33.2
Zm00001eb265860 Zea mays B73 HOM05M005905 ORTHO05M006703 3.1e-12 75.1 236 33.1
ATR0733G097 Amborella trichopoda HOM05M005905 ORTHO05M006703 1.5e-11 72.8 85 40.0
Solyc10g084510.1 Solanum lycopersicum HOM05M005905 ORTHO05M006703 4.5e-11 71.2 123 40.7
Asa6G01314 Allium sativum HOM05M005905 ORTHO05M006703 2.2e-10 68.9 155 37.4
Asa6G01315 Allium sativum HOM05M005905 ORTHO05M006703 2.2e-10 68.9 155 37.4
AT3G46310 Arabidopsis thaliana HOM05M005905 ORTHO05M006703 7.1e-09 63.9 82 40.2
HPP92_019082 Vanilla planifolia HOM05M005905 ORTHO05M006703 6.1e-08 60.8 156 31.4
MBI16_g10976_MAGBIO Magnolia biondii HOM05M005905 ORTHO05M006703 7.9e-08 60.5 140 29.3
OB05G11300 Oryza brachyantha HOM05M005905 ORTHO05M006703 3.0e-07 58.5 41 70.7
CALSI_Maker00005892 Calamus simplicifolius HOM05M005905 ORTHO05M006703 3.9e-07 58.2 46 60.9
Aco013329 Ananas comosus HOM05M038756 ORTHO05M006703 5.7e-06 54.3 87 36.8


User provided reference genes

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