Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g072490.2 Solanum lycopersicum HOM05M002579 ORTHO05M002727 2.3e-279 964.5 642 100.0
Glyma.11G151915 Glycine max HOM05M002579 ORTHO05M002727 2.3e-117 426.4 663 45.7
Potri.016G085900 Populus trichocarpa HOM05M002579 ORTHO05M002727 1.6e-110 403.7 662 42.9
Glyma.03G178100 Glycine max HOM05M002579 ORTHO05M002727 3.2e-103 379.4 656 44.2
MBI14_g17614_MAGBIO Magnolia biondii HOM05M002579 ORTHO05M002727 1.6e-102 377.1 660 43.5
Potri.006G131400 Populus trichocarpa HOM05M002579 ORTHO05M002727 7.9e-102 374.8 662 41.5
Glyma.15G044900 Glycine max HOM05M002579 ORTHO05M002727 1.1e-100 370.9 660 41.1
p5.00_sc00450_p0011 Elaeis guineensis HOM05M002579 ORTHO05M002727 1.5e-97 360.5 649 40.7
Glyma.13G328900 Glycine max HOM05M002579 ORTHO05M002727 1.4e-95 354.0 659 41.3
Glyma.10G049600 Glycine max HOM05M002579 ORTHO05M002727 5.5e-95 352.1 661 39.6
Glyma.19G178900 Glycine max HOM05M002579 ORTHO05M002727 2.1e-94 350.1 659 43.7
Glyma.13G137200 Glycine max HOM05M002579 ORTHO05M002727 3.6e-94 349.4 661 39.8
p5.00_sc00121_p0079 Elaeis guineensis HOM05M002579 ORTHO05M002727 3.3e-92 342.8 650 42.8
CALSI_Maker00020858 Calamus simplicifolius HOM05M002579 ORTHO05M002727 1.8e-85 320.5 550 38.7
p5.00_sc00003_p0158 Elaeis guineensis HOM05M002579 ORTHO05M002727 6.9e-82 308.5 591 37.7
Solyc10g084290.2 Solanum lycopersicum HOM05M002579 ORTHO05M002727 2.6e-81 306.6 659 37.6
Solyc10g086030.2 Solanum lycopersicum HOM05M002579 ORTHO05M002727 2.6e-81 306.6 653 38.3
Glyma.12G072200 Glycine max HOM05M002579 ORTHO05M002727 2.2e-80 303.5 663 39.8
Ma10_g05380 Musa acuminata HOM05M002579 ORTHO05M002727 2.2e-80 303.5 650 38.6
p5.00_sc00440_p0004 Elaeis guineensis HOM05M002579 ORTHO05M002727 8.5e-72 275.0 582 34.9
Ma06_g34770 Musa acuminata HOM05M002579 ORTHO05M002727 5.7e-68 262.3 570 36.0
Zosma01g18620 Zostera marina HOM05M001663 ORTHO05M002727 2.8e-67 260.0 581 34.3
Aco011024 Ananas comosus HOM05M002579 ORTHO05M002727 4.8e-67 259.2 567 41.1
HPP92_003606 Vanilla planifolia HOM05M001854 ORTHO05M001879 6.3e-67 258.8 653 34.2
PH02Gene04389 Phyllostachys edulis HOM05M002579 ORTHO05M002727 1.1e-66 258.1 611 34.2
Solyc09g007360.3 Solanum lycopersicum HOM05M002579 ORTHO05M002727 5.9e-65 252.3 589 37.4
Horvu_MOREX_1H01G081500 Hordeum vulgare HOM05M002579 ORTHO05M002727 1.7e-64 250.8 601 34.3
DDU256G0436 Dioscorea dumetorum HOM05M002579 ORTHO05M002727 6.5e-64 248.8 464 37.7
CALSI_Maker00015879 Calamus simplicifolius HOM05M002579 ORTHO05M002727 3.0e-61 240.0 584 33.7
TraesCS1B03G0199300 Triticum aestivum HOM05M002579 ORTHO05M002727 2.2e-59 233.8 667 31.3
Spipo23G0032100 Spirodela polyrhiza HOM05M002579 ORTHO05M002727 1.6e-57 227.6 704 29.8
TraesCS1A03G0146900 Triticum aestivum HOM05M002579 ORTHO05M002727 1.7e-56 224.2 605 32.1
CDE02G3314 Ceratophyllum demersum HOM05M002579 ORTHO05M002727 1.5e-55 221.1 542 34.1
GWHGASIY000651 Secale cereale HOM05M002579 ORTHO05M002727 1.5e-55 221.1 604 33.1
CDE09G1283 Ceratophyllum demersum HOM05M002579 ORTHO05M002727 1.9e-55 220.7 562 34.0
TRITD1Av1G018720 Triticum turgidum HOM05M002579 ORTHO05M002727 1.9e-55 220.7 670 30.7
Ma08_g18000 Musa acuminata HOM05M002579 ORTHO05M002727 3.2e-55 219.9 650 29.8
TraesCS1D03G0133600 Triticum aestivum HOM05M002579 ORTHO05M002727 9.5e-55 218.4 670 31.2
Bradi2g37920 Brachypodium distachyon HOM05M002579 ORTHO05M002727 1.6e-54 217.6 609 32.2
AT5G60210 Arabidopsis thaliana HOM05M002579 ORTHO05M002727 2.1e-54 217.2 653 32.8
GWHGASIY000658 Secale cereale HOM05M002579 ORTHO05M002727 2.8e-54 216.9 604 33.1
GWHGAORA004477 Cenchrus purpureus HOM05M002579 ORTHO05M002727 8.8e-53 211.8 664 31.6
AET1Gv20149200 Aegilops tauschii HOM05M002579 ORTHO05M002727 1.3e-51 208.0 605 32.6
AT2G37080 Arabidopsis thaliana HOM05M002579 ORTHO05M002727 4.9e-51 206.1 659 31.7
Ma01_g22570 Musa acuminata HOM05M002579 ORTHO05M002727 6.3e-51 205.7 630 29.2
GWHGAORA039562 Cenchrus purpureus HOM05M002579 ORTHO05M002727 2.4e-50 203.8 676 30.3
Pahal.3G101000 Panicum hallii HOM05M002579 ORTHO05M002727 1.2e-49 201.4 663 30.2
Ot_Chr5_g15382 Oropetium thomaeum HOM05M002579 ORTHO05M002727 3.5e-49 199.9 619 31.5
Seita.3G045400 Setaria italica HOM05M002579 ORTHO05M002727 3.5e-49 199.9 666 30.9
Sevir.3G046200 Setaria viridis HOM05M002579 ORTHO05M002727 5.9e-49 199.1 666 30.8
Dexi3B01G0009750 Digitaria exilis HOM05M002579 ORTHO05M002727 3.3e-47 193.4 599 31.4
GWHGAZTO081564 Oryza alta HOM05M002579 ORTHO05M002727 2.8e-46 190.3 704 28.8
PH02Gene41742 Phyllostachys edulis HOM05M002579 ORTHO05M002727 3.6e-46 189.9 704 28.4
GWHGAZTO032514 Oryza alta HOM05M002579 ORTHO05M002727 4.7e-46 189.5 423 34.3
ATR1159G041 Amborella trichopoda HOM05M002579 ORTHO05M002727 8.9e-45 185.3 649 29.3
OB05G11690 Oryza brachyantha HOM05M002579 ORTHO05M002727 8.9e-45 185.3 708 29.2
OsKitaake01g389800 Oryza sativa Kitaake HOM05M002579 ORTHO05M002727 1.7e-43 181.0 585 29.1
evm.TU.AsparagusV1_07.376.V1.1 Asparagus officinalis HOM05M002579 ORTHO05M002727 3.7e-43 179.9 652 28.7
Dexi3A01G0009640 Digitaria exilis HOM05M002579 ORTHO05M002727 6.4e-43 179.1 605 30.9
Misin17G026300 Miscanthus sinensis HOM05M002579 ORTHO05M002727 7.0e-42 175.6 676 30.2
GWHGAZTO058144 Oryza alta HOM05M002579 ORTHO05M002727 4.6e-41 172.9 583 27.4
PH02Gene04940 Phyllostachys edulis HOM05M002579 ORTHO05M002727 1.7e-40 171.0 579 29.4
EJB05_18662 Eragrostis curvula HOM05M002579 ORTHO05M002727 8.6e-40 168.7 581 28.1
EJB05_52130 Eragrostis curvula HOM05M002579 ORTHO05M002727 8.6e-40 168.7 581 28.1
OsKitaake05g017400 Oryza sativa Kitaake HOM05M002579 ORTHO05M002727 8.6e-40 168.7 662 29.8
OsR498G0509630100.01 Oryza sativa ssp. indica HOM05M002579 ORTHO05M002727 8.6e-40 168.7 662 29.8
Os05g0122600 Oryza sativa ssp. japonica HOM05M002579 ORTHO05M002727 8.6e-40 168.7 662 29.8
CALSI_Maker00033344 Calamus simplicifolius HOM05M002579 ORTHO05M002727 1.1e-39 168.3 204 49.5
Dexi5B01G0031930 Digitaria exilis HOM05M002579 ORTHO05M002727 1.5e-39 167.9 583 27.8
Ot_Chr3_g18793 Oropetium thomaeum HOM05M002579 ORTHO05M002727 7.3e-39 165.6 582 27.8
GWHGAORA045356 Cenchrus purpureus HOM05M002579 ORTHO05M002727 9.5e-39 165.2 582 27.8
Dexi5A01G0031660 Digitaria exilis HOM05M002579 ORTHO05M002727 1.6e-38 164.5 585 28.2
Asa2G01555 Allium sativum HOM05M002579 ORTHO05M002727 2.8e-38 163.7 597 30.0
Sspon.03G0003310-4D Saccharum spontaneum HOM05M002579 ORTHO05M002727 2.8e-38 163.7 583 28.3
Seita.5G370900 Setaria italica HOM05M002579 ORTHO05M002727 2.8e-38 163.7 583 28.0
Sevir.5G376400 Setaria viridis HOM05M002579 ORTHO05M002727 2.8e-38 163.7 583 28.0
Misin16G023800 Miscanthus sinensis HOM05M002579 ORTHO05M002727 3.6e-38 163.3 677 30.1
EJB05_34180 Eragrostis curvula HOM05M002579 ORTHO05M002727 4.7e-38 162.9 624 31.4
Sspon.03G0003310-2B Saccharum spontaneum HOM05M002579 ORTHO05M002727 4.7e-38 162.9 583 28.5
GWHGAZTO005819 Oryza alta HOM05M002579 ORTHO05M002727 6.2e-38 162.5 551 28.1
Sspon.07G0014610-1A Saccharum spontaneum HOM05M002579 ORTHO05M002727 6.2e-38 162.5 601 29.3
Sspon.07G0014610-3C Saccharum spontaneum HOM05M002579 ORTHO05M002727 6.2e-38 162.5 612 31.4
Sobic.003G346200 Sorghum bicolor HOM05M002579 ORTHO05M002727 6.2e-38 162.5 572 28.1
Misin06G313300 Miscanthus sinensis HOM05M002579 ORTHO05M002727 1.0e-37 161.8 572 28.5
Sspon.03G0003310-3C Saccharum spontaneum HOM05M002579 ORTHO05M002727 1.0e-37 161.8 582 28.7
Zm00001eb148880 Zea mays B73 HOM05M002579 ORTHO05M002727 1.0e-37 161.8 572 28.1
Zm00007a00028681 Zea mays B104 HOM05M002579 ORTHO05M002727 1.0e-37 161.8 572 28.1
Misin05G319900 Miscanthus sinensis HOM05M002579 ORTHO05M002727 1.4e-37 161.4 572 28.5
EJB05_56601 Eragrostis curvula HOM05M002579 ORTHO05M002727 5.2e-37 159.5 624 31.2
Zm00007a00045280 Zea mays B104 HOM05M002579 ORTHO05M002727 8.9e-37 158.7 423 31.4
Zjn_sc00040.1.g04380.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M002579 ORTHO05M002727 1.2e-36 158.3 537 28.7
GWHGAORA031047 Cenchrus purpureus HOM05M002579 ORTHO05M002727 2.0e-36 157.5 586 27.6
Aco007034 Ananas comosus HOM05M002579 ORTHO05M002727 7.5e-36 155.6 584 35.3
Zm00007a00048136 Zea mays B104 HOM05M002579 ORTHO05M002727 1.3e-35 154.8 572 28.0
Sspon.07G0014610-2B Saccharum spontaneum HOM05M002579 ORTHO05M002727 4.9e-35 152.9 604 29.6
Os01g0834100 Oryza sativa ssp. japonica HOM05M002579 ORTHO05M002727 1.4e-34 151.4 454 28.0
PH02Gene23828 Phyllostachys edulis HOM05M002579 ORTHO05M002727 1.9e-34 151.0 584 28.3
Spipo22G0032900 Spirodela polyrhiza HOM05M002579 ORTHO05M002727 1.9e-34 151.0 588 29.1
Sspon.07G0014640-4D Saccharum spontaneum HOM05M002579 ORTHO05M002727 4.1e-34 149.8 336 33.9
OsR498G0102275800.01 Oryza sativa ssp. indica HOM05M002579 ORTHO05M002727 5.4e-34 149.4 585 27.7
Pahal.5G101900 Panicum hallii HOM05M002579 ORTHO05M002727 7.0e-34 149.1 583 27.1
Sobic.009G025400 Sorghum bicolor HOM05M002579 ORTHO05M002727 9.2e-34 148.7 670 29.0
Zm00001eb368280 Zea mays B73 HOM05M002579 ORTHO05M002727 3.0e-32 143.7 594 27.3
Zm00001eb265540 Zea mays B73 HOM05M002579 ORTHO05M002727 5.0e-32 142.9 681 27.9
GWHGAORA031064 Cenchrus purpureus HOM05M002579 ORTHO05M002727 1.1e-31 141.7 582 26.8
Horvu_MOREX_3H01G539300 Hordeum vulgare HOM05M002579 ORTHO05M002727 3.1e-29 133.7 459 27.2
evm.TU.AsparagusV1_02.235.V1.1 Asparagus officinalis HOM05M002579 ORTHO05M002727 4.0e-29 133.3 343 30.9
Zjn_sc00009.1.g07540.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M002579 ORTHO05M002727 1.2e-28 131.7 583 25.4
Zosma05g04860 Zostera marina HOM05M002579 ORTHO05M002727 7.5e-28 129.0 581 26.7
Bradi2g54177 Brachypodium distachyon HOM05M002579 ORTHO05M002727 9.8e-28 128.6 581 27.2
HPP92_001038 Vanilla planifolia HOM05M002579 ORTHO05M002727 9.8e-28 128.6 129 53.5
HPP92_001037 Vanilla planifolia HOM05M002579 ORTHO05M002727 1.9e-26 124.4 467 27.6
TRIDC1AG008230 Triticum dicoccoides HOM05M002579 ORTHO05M002727 2.4e-26 124.0 473 27.9
TRITD1Bv1G022350 Triticum turgidum HOM05M002579 ORTHO05M004281 9.2e-26 122.1 479 27.6
TraesCS3A03G0839700 Triticum aestivum HOM05M002579 ORTHO05M002727 5.1e-24 116.3 581 26.0
TraesCS3B03G0963400 Triticum aestivum HOM05M002579 ORTHO05M002727 5.1e-24 116.3 578 25.8
TRITD3Av1G214880 Triticum turgidum HOM05M002579 ORTHO05M002727 5.1e-24 116.3 581 26.0
TRITD3Bv1G199490 Triticum turgidum HOM05M002579 ORTHO05M002727 5.1e-24 116.3 578 25.8
GWHGASIY016546 Secale cereale HOM05M002579 ORTHO05M002727 8.6e-24 115.5 459 26.1
TRIDC1BG010350 Triticum dicoccoides HOM05M002579 ORTHO05M002727 8.6e-24 115.5 458 27.3
AET3Gv20792200 Aegilops tauschii HOM05M002579 ORTHO05M002727 4.3e-23 113.2 460 26.5
OB01G45020 Oryza brachyantha HOM05M002579 ORTHO05M002727 4.3e-23 113.2 399 26.1
TraesCS3D03G0770600 Triticum aestivum HOM05M002579 ORTHO05M002727 4.3e-23 113.2 460 26.5
Sspon.03G0003310-1A Saccharum spontaneum HOM05M002579 ORTHO05M002727 5.2e-21 106.3 566 25.1
AT3G53350 Arabidopsis thaliana HOM05M002579 ORTHO05M002727 2.6e-20 104.0 607 26.7
MBI14_g13893_MAGBIO Magnolia biondii HOM05M002579 ORTHO05M002727 9.9e-20 102.1 160 45.0
MBI10_g30421_MAGBIO Magnolia biondii HOM05M003235 ORTHO05M003685 2.7e-17 94.0 182 35.2
Ma01_g21500 Musa acuminata HOM05M003235 ORTHO05M003685 2.7e-17 94.0 179 36.3
SEGI_00111 Sequoiadendron giganteum HOM05M002579 ORTHO05M003685 2.7e-17 94.0 160 38.8
V3.Lp_chr3_0G18222 Lolium perenne HOM05M002579 ORTHO05M002727 1.7e-16 91.3 549 25.3
AT1G78430 Arabidopsis thaliana HOM05M003235 ORTHO05M003685 4.3e-15 86.7 202 31.2
CALSI_Maker00016273 Calamus simplicifolius HOM05M003235 ORTHO05M003685 9.6e-15 85.5 221 31.7
Solyc10g019030.1 Solanum lycopersicum HOM05M002579 ORTHO05M002727 1.6e-14 84.7 316 28.2
Potri.001G377900 Populus trichocarpa HOM05M003235 ORTHO05M003685 3.6e-14 83.6 187 32.1
CALSI_Maker00012354 Calamus simplicifolius HOM05M003235 ORTHO05M003685 4.7e-14 83.2 178 34.8
Ma05_g08860 Musa acuminata HOM05M003235 ORTHO05M003685 4.7e-14 83.2 181 33.7
p5.00_sc00065_p0068 Elaeis guineensis HOM05M003235 ORTHO05M003685 5.8e-12 76.3 189 31.7
Asa7G03031 Allium sativum HOM05M002579 ORTHO05M002727 1.7e-11 74.7 644 22.8
EJB05_16925 Eragrostis curvula HOM05M003235 ORTHO05M003685 1.7e-11 74.7 204 29.9
Spipo19G0010100 Spirodela polyrhiza HOM05M003235 ORTHO05M003685 2.2e-11 74.3 173 35.8
Ot_Chr3_g12566 Oropetium thomaeum HOM05M003235 ORTHO05M003685 3.8e-11 73.6 204 29.9
Asa1G03684 Allium sativum HOM05M002579 ORTHO05M002727 4.2e-10 70.1 159 34.0
TRIDC3BG049550 Triticum dicoccoides HOM05M003235 ORTHO05M003685 7.1e-10 69.3 177 32.2
TraesCS3B03G0839800 Triticum aestivum HOM05M003235 ORTHO05M003685 9.3e-10 68.9 177 32.2
TRITD3Bv1G173360 Triticum turgidum HOM05M003235 ORTHO05M003685 9.3e-10 68.9 177 32.2
GWHGASIY015990 Secale cereale HOM05M003235 ORTHO05M003685 1.6e-09 68.2 179 30.2
CALSI_Maker00027871 Calamus simplicifolius HOM05M002579 ORTHO05M002727 2.1e-09 67.8 199 26.6
PH02Gene00804 Phyllostachys edulis HOM05M003235 ORTHO05M003685 2.1e-09 67.8 177 30.5
SEGI_24466 Sequoiadendron giganteum HOM05M002844 ORTHO05M000440 2.7e-09 67.4 242 28.5
AET3Gv20696000 Aegilops tauschii HOM05M003235 ORTHO05M003685 3.5e-09 67.0 182 30.8
TraesCS3D03G0676800 Triticum aestivum HOM05M003235 ORTHO05M003685 3.5e-09 67.0 182 30.8
TraesCS3A03G0733200 Triticum aestivum HOM05M003235 ORTHO05M003685 4.6e-09 66.6 182 30.8
TRITD3Av1G190620 Triticum turgidum HOM05M003235 ORTHO05M003685 1.0e-08 65.5 217 29.0
CDE02G2317 Ceratophyllum demersum HOM05M003235 ORTHO05M003685 1.3e-08 65.1 302 26.8
Pahal.5G153200 Panicum hallii HOM05M003235 ORTHO05M003685 3.0e-08 63.9 172 28.5
GWHGAZTO005130 Oryza alta HOM05M003235 ORTHO05M003685 5.1e-08 63.2 174 30.5
Bradi2g50317 Brachypodium distachyon HOM05M003235 ORTHO05M003685 6.6e-08 62.8 124 32.3
HPP92_024761 Vanilla planifolia HOM05M003235 ORTHO05M003685 6.6e-08 62.8 162 32.1
HPP92_020289 Vanilla planifolia HOM05M003235 ORTHO05M003685 1.1e-07 62.0 146 29.5
Ma06_g28580 Musa acuminata HOM05M003235 ORTHO05M003685 1.5e-07 61.6 137 33.6
Asa1G03700 Allium sativum HOM05M002579 ORTHO05M002727 1.9e-07 61.2 93 38.7
CDE10G0657 Ceratophyllum demersum HOM05M003235 ORTHO05M003685 1.9e-07 61.2 131 30.5
Zjn_sc00040.1.g00250.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M003235 ORTHO05M003685 1.9e-07 61.2 117 31.6
Ma08_g27910 Musa acuminata HOM05M003235 ORTHO05M003685 4.3e-07 60.1 130 33.1
Ma09_g06280 Musa acuminata HOM05M003235 ORTHO05M003685 5.6e-07 59.7 156 32.1
Aco021366 Ananas comosus HOM05M003235 ORTHO05M003685 7.3e-07 59.3 146 34.2
Ma04_g15140 Musa acuminata HOM05M003235 ORTHO05M003685 7.3e-07 59.3 197 28.4
Sobic.003G301200 Sorghum bicolor HOM05M003235 ORTHO05M003685 2.1e-06 57.8 116 32.8
p5.00_sc13240_p0001 Elaeis guineensis HOM05M003235 ORTHO05M003685 4.8e-06 56.6 186 30.1
GWHGAORA044861 Cenchrus purpureus HOM05M003235 ORTHO05M003685 6.2e-06 56.2 112 31.2
Asa5G05798 Allium sativum HOM05M002579 ORTHO05M002727 8.1e-06 55.8 279 25.8


User provided reference genes

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