Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g072250.2 Solanum lycopersicum HOM05M006075 ORTHO05M002125 9.5e-234 812.4 414 100.0
Solyc12g099920.2 Solanum lycopersicum HOM05M006075 ORTHO05M002125 1.1e-43 181.0 575 28.9
evm.TU.AsparagusV1_04.2937.V1.1 Asparagus officinalis HOM05M006075 ORTHO05M002125 1.9e-16 90.5 366 23.0
Glyma.04G206551 Glycine max HOM05M006075 ORTHO05M002125 1.1e-14 84.7 188 30.9
TRITD1Bv1G152870 Triticum turgidum HOM05M006075 ORTHO05M002125 4.0e-14 82.8 339 26.0
TRIDC1BG044910 Triticum dicoccoides HOM05M006075 ORTHO05M002125 8.9e-14 81.6 339 26.0
AET1Gv20641200 Aegilops tauschii HOM05M006075 ORTHO05M002125 1.5e-13 80.9 333 27.0
TraesCS1D03G0637500 Triticum aestivum HOM05M006075 ORTHO05M002125 1.5e-13 80.9 333 27.0
Glyma.06G159000 Glycine max HOM05M006075 ORTHO05M002125 2.0e-13 80.5 104 37.5
ATR0824G107 Amborella trichopoda HOM05M031767 ORTHO05M002125 2.6e-13 80.1 415 25.8
Dexi4A01G0016010 Digitaria exilis HOM05M006075 ORTHO05M002125 2.6e-13 80.1 350 25.1
Horvu_MOREX_1H01G402100 Hordeum vulgare HOM05M006075 ORTHO05M002125 4.4e-13 79.3 343 25.7
TraesCS1A03G0672900 Triticum aestivum HOM05M006075 ORTHO05M002125 4.4e-13 79.3 332 25.9
TRIDC1AG039470 Triticum dicoccoides HOM05M006075 ORTHO05M002125 4.4e-13 79.3 332 25.9
TRITD1Av1G166920 Triticum turgidum HOM05M006075 ORTHO05M002125 4.4e-13 79.3 332 25.9
Glyma.13G034700 Glycine max HOM05M006075 ORTHO05M002125 1.7e-12 77.4 109 39.4
Ot_Chr5_g05055 Oropetium thomaeum HOM05M006075 ORTHO05M002125 6.4e-12 75.5 346 26.9
GWHGASIY002107 Secale cereale HOM05M006075 ORTHO05M002125 6.4e-12 75.5 101 39.6
GWHGASIY003473 Secale cereale HOM05M006075 ORTHO05M002125 6.4e-12 75.5 101 39.6
AT3G07730 Arabidopsis thaliana HOM05M033595 ORTHO05M002125 8.3e-12 75.1 105 39.0
Dexi4B01G0015810 Digitaria exilis HOM05M006075 ORTHO05M002125 8.3e-12 75.1 342 26.0
EJB05_03227 Eragrostis curvula HOM05M004037 ORTHO05M002125 1.1e-11 74.7 113 35.4
Horvu_MOREX_2H01G563300 Hordeum vulgare HOM05M004037 ORTHO05M002125 1.4e-11 74.3 332 26.5
Pahal.4G102300 Panicum hallii HOM05M006075 ORTHO05M002125 3.2e-11 73.2 352 25.9
Misin18G170700 Miscanthus sinensis HOM05M006075 ORTHO05M002125 4.1e-11 72.8 345 24.6
GWHGAZTO034918 Oryza alta HOM05M006075 ORTHO05M002125 5.4e-11 72.4 103 38.8
GWHGAZTO083829 Oryza alta HOM05M006075 ORTHO05M002125 5.4e-11 72.4 103 38.8
OsKitaake05g166400 Oryza sativa Kitaake HOM05M006075 ORTHO05M002125 5.4e-11 72.4 103 38.8
Os05g0423200 Oryza sativa ssp. japonica HOM05M006075 ORTHO05M002125 5.4e-11 72.4 103 38.8
Potri.002G077500 Populus trichocarpa HOM05M006075 ORTHO05M002125 5.4e-11 72.4 105 32.4
Sobic.010G175000 Sorghum bicolor HOM05M006075 ORTHO05M002125 5.4e-11 72.4 360 24.2
Zosma05g30320 Zostera marina HOM05M006075 ORTHO05M002125 5.4e-11 72.4 105 36.2
Sspon.08G0006960-2C Saccharum spontaneum HOM05M006075 ORTHO05M002125 9.2e-11 71.6 100 38.0
Sspon.08G0006960-3D Saccharum spontaneum HOM05M006075 ORTHO05M002125 9.2e-11 71.6 100 38.0
Zm00001eb075330 Zea mays B73 HOM05M004037 ORTHO05M002125 1.2e-10 71.2 106 35.8
Zm00007a00011117 Zea mays B104 HOM05M004037 ORTHO05M002125 1.2e-10 71.2 106 35.8
SEGI_20168 Sequoiadendron giganteum HOM05M027080 ORTHO05M002125 1.6e-10 70.9 121 32.2
Solyc04g057970.3 Solanum lycopersicum HOM05M006075 ORTHO05M002125 1.6e-10 70.9 114 36.0
Zosma05g11060 Zostera marina HOM05M006075 ORTHO05M002125 1.6e-10 70.9 91 37.4
OB04G27180 Oryza brachyantha HOM05M004037 ORTHO05M002125 2.1e-10 70.5 334 25.7
Sspon.08G0006960-1A Saccharum spontaneum HOM05M006075 ORTHO05M002125 2.1e-10 70.5 100 38.0
GWHGASIY010209 Secale cereale HOM05M004037 ORTHO05M002125 2.1e-10 70.5 329 25.2
Sspon.05G0031950-1C Saccharum spontaneum HOM05M004037 ORTHO05M002125 2.7e-10 70.1 106 35.8
HPP92_008975 Vanilla planifolia HOM05M006075 ORTHO05M002125 2.7e-10 70.1 378 22.5
EJB05_35584 Eragrostis curvula HOM05M006075 ORTHO05M002125 3.5e-10 69.7 100 37.0
Sspon.05G0006230-3D Saccharum spontaneum HOM05M004037 ORTHO05M002125 4.6e-10 69.3 105 36.2
Seita.4G232600 Setaria italica HOM05M006075 ORTHO05M002125 4.6e-10 69.3 358 25.1
Sevir.4G244400 Setaria viridis HOM05M006075 ORTHO05M002125 4.6e-10 69.3 358 25.1
TraesCS1B03G0765300 Triticum aestivum HOM05M006075 ORTHO05M002125 4.6e-10 69.3 328 25.0
Misin11G158200 Miscanthus sinensis HOM05M004037 ORTHO05M002125 6.0e-10 68.9 106 34.9
Pahal.7G236100 Panicum hallii HOM05M004037 ORTHO05M002125 6.0e-10 68.9 106 34.9
TraesCS2A03G0937100 Triticum aestivum HOM05M004037 ORTHO05M002125 6.0e-10 68.9 329 24.9
TRIDC2AG055880 Triticum dicoccoides HOM05M004037 ORTHO05M002125 6.0e-10 68.9 329 24.9
TRITD2Av1G228920 Triticum turgidum HOM05M004037 ORTHO05M002125 6.0e-10 68.9 329 24.9
Glyma.14G156000 Glycine max HOM05M006075 ORTHO05M002125 7.8e-10 68.6 106 36.8
Sspon.05G0006230-2C Saccharum spontaneum HOM05M004037 ORTHO05M002125 7.8e-10 68.6 106 35.8
Seita.7G183300 Setaria italica HOM05M004037 ORTHO05M002125 7.8e-10 68.6 106 31.1
Sevir.7G193500 Setaria viridis HOM05M004037 ORTHO05M002125 7.8e-10 68.6 106 31.1
V3.Lp_chr1_0G12264 Lolium perenne HOM05M006075 ORTHO05M002125 1.0e-09 68.2 101 35.6
TraesCS2D03G0879200 Triticum aestivum HOM05M004037 ORTHO05M002125 1.0e-09 68.2 336 24.7
Sobic.006G162400 Sorghum bicolor HOM05M004037 ORTHO05M002125 1.3e-09 67.8 341 24.6
TraesCS2B03G1032000 Triticum aestivum HOM05M004037 ORTHO05M002125 1.3e-09 67.8 329 24.9
TRIDC2BG058770 Triticum dicoccoides HOM05M004037 ORTHO05M002125 1.3e-09 67.8 329 24.9
AET2Gv20865100 Aegilops tauschii HOM05M004037 ORTHO05M002125 1.7e-09 67.4 329 25.2
GWHGAORA029576 Cenchrus purpureus HOM05M006075 ORTHO05M002125 1.7e-09 67.4 340 23.5
Mapoly0015s0190 Marchantia polymorpha HOM05M006075 ORTHO05M002125 1.7e-09 67.4 108 37.0
PH02Gene40946 Phyllostachys edulis HOM05M004037 ORTHO05M002125 1.7e-09 67.4 348 23.6
Misin12G166300 Miscanthus sinensis HOM05M004037 ORTHO05M002125 2.3e-09 67.0 349 24.4
Zm00007a00050144 Zea mays B104 HOM05M006075 ORTHO05M002125 2.3e-09 67.0 356 24.2
V3.Lp_chr2_0G18506 Lolium perenne HOM05M004037 ORTHO05M002125 3.9e-09 66.2 337 24.6
Ot_Chr6_g12233 Oropetium thomaeum HOM05M004037 ORTHO05M002125 3.9e-09 66.2 106 34.0
AT4G01170 Arabidopsis thaliana HOM05M033595 ORTHO05M002125 5.1e-09 65.9 113 37.2
GWHGAORA014412 Cenchrus purpureus HOM05M004037 ORTHO05M002125 5.1e-09 65.9 106 34.0
GWHGAORA062480 Cenchrus purpureus HOM05M004037 ORTHO05M002125 5.1e-09 65.9 106 30.2
OsKitaake04g210200 Oryza sativa Kitaake HOM05M004037 ORTHO05M002125 5.1e-09 65.9 326 24.5
OsR498G0408988000.01 Oryza sativa ssp. indica HOM05M004037 ORTHO05M002125 5.1e-09 65.9 326 24.5
Os04g0539100 Oryza sativa ssp. japonica HOM05M004037 ORTHO05M002125 5.1e-09 65.9 326 24.5
DDU613G0264 Dioscorea dumetorum HOM05M006075 ORTHO05M002125 6.6e-09 65.5 336 21.1
Seita.7G183400 Setaria italica HOM05M004037 ORTHO05M002125 6.6e-09 65.5 106 34.0
Sevir.7G193600 Setaria viridis HOM05M004037 ORTHO05M002125 6.6e-09 65.5 106 34.0
OB04G24540 Oryza brachyantha HOM05M006075 ORTHO05M002125 8.6e-09 65.1 102 38.2
OB04G13440 Oryza brachyantha HOM05M004037 ORTHO05M002125 1.1e-08 64.7 115 33.0
p5.00_sc00016_p0217 Elaeis guineensis HOM05M006075 ORTHO05M002125 1.5e-08 64.3 101 33.7
Ma04_g20000 Musa acuminata HOM05M006075 ORTHO05M002125 1.9e-08 63.9 182 25.3
Misin11G158100 Miscanthus sinensis HOM05M004037 ORTHO05M002125 2.5e-08 63.5 106 30.2
Pahal.7G236000 Panicum hallii HOM05M004037 ORTHO05M002125 2.5e-08 63.5 106 30.2
PH02Gene15520 Phyllostachys edulis HOM05M006075 ORTHO05M002125 2.5e-08 63.5 100 38.0
Zjn_sc00056.1.g03610.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M004037 ORTHO05M002125 2.5e-08 63.5 349 24.9
Asa5G05348 Allium sativum HOM05M006075 ORTHO05M002125 3.3e-08 63.2 111 30.6
Bradi5g17050 Brachypodium distachyon HOM05M004037 ORTHO05M002125 3.3e-08 63.2 334 26.3
Sobic.006G162300 Sorghum bicolor HOM05M004037 ORTHO05M002125 3.3e-08 63.2 105 30.5
PH02Gene45996 Phyllostachys edulis HOM05M006075 ORTHO05M002125 4.3e-08 62.8 346 23.1
SMO147G0016 Selaginella moellendorffii HOM05M006075 ORTHO05M002125 4.3e-08 62.8 106 34.0
Bradi2g24954 Brachypodium distachyon HOM05M006075 ORTHO05M002125 5.6e-08 62.4 331 23.3
V3.Lp_chr2_0G18500 Lolium perenne HOM05M004037 ORTHO05M002125 5.6e-08 62.4 107 31.8
Dexi6A01G0002470 Digitaria exilis HOM05M004037 ORTHO05M002125 7.3e-08 62.0 111 33.3
Horvu_MOREX_2H01G563100 Hordeum vulgare HOM05M004037 ORTHO05M002125 7.3e-08 62.0 107 30.8
GWHGAZTO080340 Oryza alta HOM05M004037 ORTHO05M002125 7.3e-08 62.0 105 32.4
TRITD2Bv1G190580 Triticum turgidum HOM05M004037 ORTHO05M002125 7.3e-08 62.0 333 24.6
Zosma03g31800 Zostera marina HOM05M002118 ORTHO05M002414 7.3e-08 62.0 143 28.7
Aco016260 Ananas comosus HOM05M006075 ORTHO05M002125 9.5e-08 61.6 103 32.0
SMO196G0029 Selaginella moellendorffii HOM05M002363 ORTHO05M002125 9.5e-08 61.6 71 43.7
AT1G21560 Arabidopsis thaliana HOM05M004037 ORTHO05M002125 1.2e-07 61.2 110 33.6
GWHGAZTO030690 Oryza alta HOM05M004037 ORTHO05M002125 1.2e-07 61.2 329 25.5
Zjn_sc00056.1.g03600.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M004037 ORTHO05M002125 1.2e-07 61.2 170 27.6
TraesCS2B03G1031400 Triticum aestivum HOM05M004037 ORTHO05M002125 2.1e-07 60.5 107 29.9
GWHGAORA034869 Cenchrus purpureus HOM05M004037 ORTHO05M002125 2.8e-07 60.1 347 22.8
GWHGASIY010212 Secale cereale HOM05M004037 ORTHO05M002125 2.8e-07 60.1 107 29.9
OsKitaake11g128500 Oryza sativa Kitaake HOM05M004037 ORTHO05M002125 6.2e-07 58.9 105 28.6
evm.TU.AsparagusV1_05.505.V1.1 Asparagus officinalis HOM05M006075 ORTHO05M002125 8.1e-07 58.5 118 31.4
SEGI_27702 Sequoiadendron giganteum HOM05M002363 ORTHO05M002125 8.1e-07 58.5 355 25.4
EJB05_38541 Eragrostis curvula HOM05M004037 ORTHO05M002125 1.1e-06 58.2 104 29.8
OsKitaake04g045300 Oryza sativa Kitaake HOM05M004037 ORTHO05M002125 1.1e-06 58.2 105 29.5
OsR498G0407755400.01 Oryza sativa ssp. indica HOM05M004037 ORTHO05M002125 1.1e-06 58.2 105 29.5
Os04g0221000 Oryza sativa ssp. japonica HOM05M004037 ORTHO05M002125 1.1e-06 58.2 105 29.5
Pp3c8_15980 Physcomitrium patens HOM05M006075 ORTHO05M002125 1.4e-06 57.8 104 34.6
GWHGASIY010210 Secale cereale HOM05M013904 ORTHO05M015669 1.4e-06 57.8 107 29.9
Bradi1g70265 Brachypodium distachyon HOM05M004037 ORTHO05M002125 4.0e-06 56.2 106 31.1
AT1G77270 Arabidopsis thaliana HOM05M004037 ORTHO05M002125 5.2e-06 55.8 101 29.7
GWHGAZTO028366 Oryza alta HOM05M004037 ORTHO05M002125 5.2e-06 55.8 103 29.1
OB04G13510 Oryza brachyantha HOM05M004037 ORTHO05M002125 5.2e-06 55.8 103 28.2
TRITD2Bv1G190420 Triticum turgidum HOM05M004037 ORTHO05M002125 6.8e-06 55.5 107 28.0
Zosma04g23780 Zostera marina HOM05M006075 ORTHO05M002125 6.8e-06 55.5 132 28.0
CALSI_Maker00034178 Calamus simplicifolius HOM05M006075 ORTHO05M002125 8.9e-06 55.1 90 36.7
Ot_Chr6_g12232 Oropetium thomaeum HOM05M004037 ORTHO05M002125 8.9e-06 55.1 106 30.2
Zosma04g22170 Zostera marina HOM05M006075 ORTHO05M002125 8.9e-06 55.1 109 29.4


User provided reference genes

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