Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g071630.1 Solanum lycopersicum HOM05M018310 ORTHO05M000923 5.0e-73 276.9 142 100.0
Glyma.03G170100 Glycine max HOM05M001201 ORTHO05M000923 2.4e-19 98.6 123 47.2
AT3G04280 Arabidopsis thaliana HOM05M001201 ORTHO05M000923 4.6e-18 94.4 127 40.9
Potri.002G253000 Populus trichocarpa HOM05M001201 ORTHO05M000923 7.8e-18 93.6 119 43.7
Glyma.19G171300 Glycine max HOM05M001201 ORTHO05M000923 8.6e-17 90.1 107 48.6
Glyma.19G169700 Glycine max HOM05M001201 ORTHO05M000923 5.6e-16 87.4 93 44.1
Potri.009G108000 Populus trichocarpa HOM05M001201 ORTHO05M000923 4.7e-15 84.3 121 38.0
Glyma.19G250500 Glycine max HOM05M001201 ORTHO05M000923 1.0e-14 83.2 122 38.5
AT5G26594 Arabidopsis thaliana HOM05M001201 ORTHO05M000923 3.1e-14 81.6 119 41.2
CDE05G3592 Ceratophyllum demersum HOM05M002791 ORTHO05M003165 3.1e-14 81.6 124 35.5
p5.00_sc00062_p0046 Elaeis guineensis HOM05M001201 ORTHO05M000923 4.0e-14 81.3 124 35.5
Glyma.03G170200 Glycine max HOM05M001201 ORTHO05M000923 6.8e-14 80.5 103 45.6
Potri.019G024900 Populus trichocarpa HOM05M001201 ORTHO05M000923 1.5e-13 79.3 119 37.8
Aco017594 Ananas comosus HOM05M001201 ORTHO05M000923 3.4e-13 78.2 133 37.6
CDE02G3575 Ceratophyllum demersum HOM05M001201 ORTHO05M000923 1.7e-12 75.9 118 34.7
Glyma.19G171400 Glycine max HOM05M001201 ORTHO05M000923 2.9e-12 75.1 107 43.0
Potri.019G025000 Populus trichocarpa HOM05M001201 ORTHO05M000923 3.7e-12 74.7 103 39.8
AagrBONN_evm.TU.Sc2ySwM_117.3920 Anthoceros agrestis HOM05M000382 ORTHO05M000923 4.9e-12 74.3 118 36.4
MBI11_g00133_MAGBIO Magnolia biondii HOM05M000115 ORTHO05M000259 4.9e-12 74.3 112 38.4
Horvu_MOREX_1H01G413600 Hordeum vulgare HOM05M001201 ORTHO05M000923 6.4e-12 73.9 122 36.9
SMO239G0026 Selaginella moellendorffii HOM05M001201 ORTHO05M000923 2.4e-11 72.0 116 32.8
Mapoly0139s0007 Marchantia polymorpha HOM05M000382 ORTHO05M000923 5.4e-11 70.9 123 36.6
SEGI_09688 Sequoiadendron giganteum HOM05M000382 ORTHO05M000923 5.4e-11 70.9 117 34.2
OB04G13430 Oryza brachyantha HOM05M001201 ORTHO05M000923 9.2e-11 70.1 122 34.4
AET5Gv20890800 Aegilops tauschii HOM05M001201 ORTHO05M000923 3.5e-10 68.2 126 34.1
Potri.001G055500 Populus trichocarpa HOM05M018310 ORTHO05M000923 4.6e-10 67.8 130 34.6
AagrBONN_evm.TU.Sc2ySwM_368.2058 Anthoceros agrestis HOM05M000382 ORTHO05M000923 6.0e-10 67.4 121 33.1
Horvu_MOREX_5H01G556400 Hordeum vulgare HOM05M001201 ORTHO05M000923 6.0e-10 67.4 123 34.1
Pp3c1_32850 Physcomitrium patens HOM05M000382 ORTHO05M000923 7.8e-10 67.0 117 35.0
DDU637G0017 Dioscorea dumetorum HOM05M001201 ORTHO05M000923 1.0e-09 66.6 142 33.1
DDU102G0174 Dioscorea dumetorum HOM05M001201 ORTHO05M000923 1.3e-09 66.2 129 37.2
Pp3c1_32730 Physcomitrium patens HOM05M000382 ORTHO05M000923 1.3e-09 66.2 139 33.1
SMO223G0043 Selaginella moellendorffii HOM05M000382 ORTHO05M000923 1.3e-09 66.2 117 35.0
TraesCS5B03G0963800 Triticum aestivum HOM05M001201 ORTHO05M000923 1.7e-09 65.9 126 33.3
TRIDC5BG059820 Triticum dicoccoides HOM05M001201 ORTHO05M000923 2.3e-09 65.5 126 33.3
TRITD5Bv1G196630 Triticum turgidum HOM05M001201 ORTHO05M000923 2.3e-09 65.5 126 33.3
SMO358G0569 Selaginella moellendorffii HOM05M000382 ORTHO05M026461 3.0e-09 65.1 136 33.1
ATR0743G090 Amborella trichopoda HOM05M001201 ORTHO05M000923 3.9e-09 64.7 120 33.3
Bradi5g03720 Brachypodium distachyon HOM05M001201 ORTHO05M000923 3.9e-09 64.7 122 32.8
Pp3c2_5400 Physcomitrium patens HOM05M000382 ORTHO05M000923 5.0e-09 64.3 117 33.3
Potri.003G172932 Populus trichocarpa HOM05M018310 ORTHO05M000923 6.6e-09 63.9 140 35.7
Aco008051 Ananas comosus HOM05M001201 ORTHO05M000923 8.6e-09 63.5 73 43.8
GWHGASIY028169 Secale cereale HOM05M001201 ORTHO05M000923 8.6e-09 63.5 126 32.5
PH02Gene14057 Phyllostachys edulis HOM05M001201 ORTHO05M000923 1.1e-08 63.2 127 34.6
Potri.003G172750 Populus trichocarpa HOM05M001201 ORTHO05M000923 1.1e-08 63.2 60 48.3
Potri.003G177300 Populus trichocarpa HOM05M013041 ORTHO05M000923 1.1e-08 63.2 60 50.0
TraesCS5A03G0915400 Triticum aestivum HOM05M001201 ORTHO05M000923 1.1e-08 63.2 124 33.1
GWHGAORA050977 Cenchrus purpureus HOM05M001201 ORTHO05M000923 1.5e-08 62.8 71 46.5
OB03G40750 Oryza brachyantha HOM05M001201 ORTHO05M000923 1.9e-08 62.4 74 47.3
TraesCS5D03G0875200 Triticum aestivum HOM05M001201 ORTHO05M000923 1.9e-08 62.4 130 33.1
Potri.001G050900 Populus trichocarpa HOM05M001201 ORTHO05M000923 2.5e-08 62.0 113 34.5
Potri.003G172800 Populus trichocarpa HOM05M013041 ORTHO05M000923 2.5e-08 62.0 114 35.1
evm.TU.AsparagusV1_09.464.V1.1 Asparagus officinalis HOM05M001201 ORTHO05M000923 3.3e-08 61.6 122 30.3
EJB05_04570 Eragrostis curvula HOM05M001201 ORTHO05M000923 3.3e-08 61.6 73 43.8
EJB05_55282 Eragrostis curvula HOM05M001201 ORTHO05M000923 3.3e-08 61.6 123 34.1
Potri.003G177400 Populus trichocarpa HOM05M013041 ORTHO05M000923 3.3e-08 61.6 60 50.0
Ma05_g17840 Musa acuminata HOM05M001201 ORTHO05M000923 4.3e-08 61.2 141 31.2
Potri.001G051000 Populus trichocarpa HOM05M001201 ORTHO05M000923 4.3e-08 61.2 68 47.1
TRIDC5AG055780 Triticum dicoccoides HOM05M001201 ORTHO05M000923 4.3e-08 61.2 73 43.8
TRITD5Av1G201480 Triticum turgidum HOM05M001201 ORTHO05M000923 4.3e-08 61.2 73 43.8
GWHGAZTO078086 Oryza alta HOM05M001201 ORTHO05M000923 5.6e-08 60.8 116 36.2
Dexi9A01G0009270 Digitaria exilis HOM05M001201 ORTHO05M000923 7.3e-08 60.5 94 38.3
Misin01G080600 Miscanthus sinensis HOM05M001201 ORTHO05M000923 7.3e-08 60.5 125 35.2
Bradi5g03730 Brachypodium distachyon HOM05M001201 ORTHO05M000923 9.5e-08 60.1 123 30.9
TraesCSU03G0429300 Triticum aestivum HOM05M001201 ORTHO05M000923 1.2e-07 59.7 125 32.8
OsKitaake03g333300 Oryza sativa Kitaake HOM05M001201 ORTHO05M000923 1.6e-07 59.3 121 33.1
OsR498G0307024500.01 Oryza sativa ssp. indica HOM05M001201 ORTHO05M000923 1.6e-07 59.3 121 33.1
Os03g0742300 Oryza sativa ssp. japonica HOM05M001201 ORTHO05M000923 1.6e-07 59.3 121 33.1
Seita.9G097600 Setaria italica HOM05M001201 ORTHO05M000923 1.6e-07 59.3 71 43.7
Sevir.9G095900 Setaria viridis HOM05M001201 ORTHO05M000923 1.6e-07 59.3 71 43.7
MBI08_g20600_MAGBIO Magnolia biondii HOM05M001201 ORTHO05M000923 2.1e-07 58.9 117 31.6
PH02Gene38329 Phyllostachys edulis HOM05M001201 ORTHO05M000923 2.1e-07 58.9 103 35.9
PRCOL_00006711 Prasinoderma coloniale HOM05M001201 ORTHO05M000923 2.1e-07 58.9 121 28.1
Zm00001eb056810 Zea mays B73 HOM05M001201 ORTHO05M000923 2.1e-07 58.9 74 44.6
Dexi9B01G0008900 Digitaria exilis HOM05M001201 ORTHO05M000923 2.8e-07 58.5 71 43.7
DDU739G0123 Dioscorea dumetorum HOM05M001201 ORTHO05M000923 2.8e-07 58.5 75 41.3
MBI08_g09974_MAGBIO Magnolia biondii HOM05M001201 ORTHO05M000923 2.8e-07 58.5 117 30.8
Bradi1g09130 Brachypodium distachyon HOM05M001201 ORTHO05M000923 3.6e-07 58.2 71 43.7
V3.Lp_chr4_0G5714 Lolium perenne HOM05M001201 ORTHO05M000923 3.6e-07 58.2 126 31.0
MCO04G430 Micromonas commoda HOM05M000382 ORTHO05M000923 3.6e-07 58.2 120 33.3
Pahal.9G092600 Panicum hallii HOM05M001201 ORTHO05M000923 3.6e-07 58.2 71 43.7
Potri.003G172866 Populus trichocarpa HOM05M013041 ORTHO05M000923 3.6e-07 58.2 59 47.5
V3.Lp_chr3_0G8972 Lolium perenne HOM05M001201 ORTHO05M000923 4.7e-07 57.8 115 31.3
Misin02G073900 Miscanthus sinensis HOM05M001201 ORTHO05M000923 4.7e-07 57.8 74 43.2
OsKitaake04g043100 Oryza sativa Kitaake HOM05M001201 ORTHO05M000923 4.7e-07 57.8 116 35.3
OsR498G0407746300.01 Oryza sativa ssp. indica HOM05M001201 ORTHO05M000923 4.7e-07 57.8 116 35.3
Os04g0212450 Oryza sativa ssp. japonica HOM05M001201 ORTHO05M000923 4.7e-07 57.8 116 35.3
PH02Gene43445 Phyllostachys edulis HOM05M001201 ORTHO05M000923 4.7e-07 57.8 119 31.9
CBR_g8541 Chara braunii HOM05M000382 ORTHO05M002700 6.2e-07 57.4 127 29.9
TraesCS5B03G1134900 Triticum aestivum HOM05M001201 ORTHO05M000923 6.2e-07 57.4 129 30.2
TRITD5Bv1G223510 Triticum turgidum HOM05M001201 ORTHO05M000923 6.2e-07 57.4 129 30.2
AET1Gv21048200 Aegilops tauschii HOM05M001201 ORTHO05M000923 8.1e-07 57.0 125 28.8
Asa7G00801 Allium sativum HOM05M001201 ORTHO05M000923 8.1e-07 57.0 123 30.1
EJB05_04584 Eragrostis curvula HOM05M001201 ORTHO05M000923 8.1e-07 57.0 73 39.7
Mapoly0059s0005 Marchantia polymorpha HOM05M000382 ORTHO05M000788 8.1e-07 57.0 127 30.7
PH02Gene46123 Phyllostachys edulis HOM05M001201 ORTHO05M000923 8.1e-07 57.0 143 30.8
Potri.003G172200 Populus trichocarpa HOM05M018310 ORTHO05M000923 8.1e-07 57.0 97 37.1
TraesCS1D03G1045200 Triticum aestivum HOM05M001201 ORTHO05M000923 8.1e-07 57.0 125 28.8
TraesCS5A03G1071700 Triticum aestivum HOM05M001201 ORTHO05M000923 8.1e-07 57.0 122 32.0
GWHGAORA019586 Cenchrus purpureus HOM05M001201 ORTHO05M000923 1.1e-06 56.6 71 40.8
MCO03G064 Micromonas commoda HOM05M001201 ORTHO05M000923 1.1e-06 56.6 118 29.7
GWHGAZTO028338 Oryza alta HOM05M001201 ORTHO05M000923 1.1e-06 56.6 125 36.0
AagrBONN_evm.TU.Sc2ySwM_228.1622 Anthoceros agrestis HOM05M000382 ORTHO05M000788 1.4e-06 56.2 138 30.4
GWHGAORA029773 Cenchrus purpureus HOM05M001201 ORTHO05M000923 1.4e-06 56.2 116 34.5
V3.Lp_chr2_0G1216 Lolium perenne HOM05M001201 ORTHO05M000923 1.4e-06 56.2 128 28.9
Pp3c27_2730 Physcomitrium patens HOM05M000382 ORTHO05M026461 1.4e-06 56.2 129 30.2
Potri.002G253100 Populus trichocarpa HOM05M001201 ORTHO05M000923 1.4e-06 56.2 131 28.2
SEGI_16415 Sequoiadendron giganteum HOM05M001201 ORTHO05M000923 1.4e-06 56.2 102 36.3
Potri.001G055600 Populus trichocarpa HOM05M018310 ORTHO05M000923 1.8e-06 55.8 136 28.7
AET5Gv21050700 Aegilops tauschii HOM05M001201 ORTHO05M000923 2.3e-06 55.5 140 31.4
SMO142G0040 Selaginella moellendorffii HOM05M000382 ORTHO05M000923 2.3e-06 55.5 114 28.1
Misin15G142000 Miscanthus sinensis HOM05M001201 ORTHO05M000923 3.1e-06 55.1 116 32.8
Pp3c1_20050 Physcomitrium patens HOM05M000382 ORTHO05M000788 3.1e-06 55.1 148 31.1
Sspon.02G0026550-1A Saccharum spontaneum HOM05M001201 ORTHO05M000923 3.1e-06 55.1 116 32.8
Spipo16G0019500 Spirodela polyrhiza HOM05M000382 ORTHO05M010858 3.1e-06 55.1 141 29.8
DDU259G0018 Dioscorea dumetorum HOM05M001201 ORTHO05M000923 4.0e-06 54.7 71 43.7
Horvu_MOREX_3H01G226100 Hordeum vulgare HOM05M001201 ORTHO05M000923 5.2e-06 54.3 77 40.3
Horvu_MOREX_3H01G226200 Hordeum vulgare HOM05M001201 ORTHO05M000923 5.2e-06 54.3 77 40.3
Horvu_MOREX_3H01G226300 Hordeum vulgare HOM05M001201 ORTHO05M000923 5.2e-06 54.3 77 40.3
AagrBONN_evm.TU.Sc2ySwM_344.2397 Anthoceros agrestis HOM05M000382 ORTHO05M000788 6.8e-06 53.9 127 28.3
V3.Lp_chr3_0G8976 Lolium perenne HOM05M001201 ORTHO05M000923 6.8e-06 53.9 111 29.7
SMO367G0856 Selaginella moellendorffii HOM05M000382 ORTHO05M000788 8.9e-06 53.5 124 29.8
TraesCS5D03G1025600 Triticum aestivum HOM05M001201 ORTHO05M000923 8.9e-06 53.5 122 31.1


User provided reference genes

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