Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g068690.2 Solanum lycopersicum HOM05M007166 ORTHO05M008340 1.1e-194 682.9 518 100.0
Glyma.12G186700 Glycine max HOM05M007166 ORTHO05M008340 1.4e-29 134.4 518 51.4
p5.00_sc00012_p0085 Elaeis guineensis HOM05M007166 ORTHO05M008340 1.8e-24 117.5 519 45.1
Aco023873 Ananas comosus HOM05M007166 ORTHO05M008340 5.0e-22 109.4 321 32.7
Glyma.13G314800 Glycine max HOM05M007166 ORTHO05M008340 2.1e-20 104.0 365 62.2
Ma06_g37490 Musa acuminata HOM05M007166 ORTHO05M008340 8.0e-20 102.1 518 45.0
CDE02G4009 Ceratophyllum demersum HOM05M007166 ORTHO05M008340 6.7e-19 99.0 518 44.6
MBI17_g01489_MAGBIO Magnolia biondii HOM05M007166 ORTHO05M008340 1.2e-18 98.2 314 30.6
Potri.004G199200 Populus trichocarpa HOM05M007166 ORTHO05M008340 2.6e-18 97.1 531 49.0
Zm00001eb140080 Zea mays B73 HOM05M007166 ORTHO05M008340 1.4e-16 91.3 523 47.6
Zm00007a00002925 Zea mays B104 HOM05M007166 ORTHO05M008340 1.4e-16 91.3 523 47.6
Zosma01g33670 Zostera marina HOM05M007166 ORTHO05M008340 4.1e-16 89.7 523 38.4
Sspon.03G0025750-3D Saccharum spontaneum HOM05M007166 ORTHO05M008340 5.3e-16 89.4 318 31.8
TRIDC3BG084300 Triticum dicoccoides HOM05M007166 ORTHO05M008340 5.3e-16 89.4 312 32.1
TRITD3Bv1G274940 Triticum turgidum HOM05M007166 ORTHO05M008340 2.0e-15 87.4 312 31.7
Sspon.03G0025750-1B Saccharum spontaneum HOM05M007166 ORTHO05M008340 7.7e-15 85.5 319 32.0
Sspon.03G0025750-1P Saccharum spontaneum HOM05M007166 ORTHO05M008340 7.7e-15 85.5 319 32.0
PH02Gene06875 Phyllostachys edulis HOM05M007166 ORTHO05M008340 1.3e-14 84.7 309 30.7
HPP92_011495 Vanilla planifolia HOM05M007166 ORTHO05M008340 8.5e-14 82.0 316 30.7
evm.TU.AsparagusV1_02.792.V1.1 Asparagus officinalis HOM05M007166 ORTHO05M008340 1.9e-13 80.9 308 64.0
TraesCS3D03G1160000 Triticum aestivum HOM05M007166 ORTHO05M008340 2.5e-13 80.5 317 31.5
GWHGAZTO007108 Oryza alta HOM05M007166 ORTHO05M008340 3.2e-13 80.1 319 33.2
OB01G54300 Oryza brachyantha HOM05M007166 ORTHO05M008340 3.2e-13 80.1 317 31.5
OsKitaake01g485500 Oryza sativa Kitaake HOM05M007166 ORTHO05M008340 3.2e-13 80.1 316 32.9
OsR498G0102757400.01 Oryza sativa ssp. indica HOM05M007166 ORTHO05M008340 3.2e-13 80.1 316 32.9
Os01g0966400 Oryza sativa ssp. japonica HOM05M007166 ORTHO05M008340 3.2e-13 80.1 316 32.9
GWHGAZTO059422 Oryza alta HOM05M007166 ORTHO05M008340 7.2e-13 79.0 324 29.6
Bradi2g61810 Brachypodium distachyon HOM05M007166 ORTHO05M008340 1.2e-12 78.2 304 28.3
Sspon.03G0025750-2C Saccharum spontaneum HOM05M007166 ORTHO05M008340 1.2e-12 78.2 510 39.0
ATR0081G029 Amborella trichopoda HOM05M007166 ORTHO05M008340 3.6e-12 76.6 61 57.4
Misin05G383700 Miscanthus sinensis HOM05M007166 ORTHO05M008340 3.6e-12 76.6 322 28.9
Misin06G387800 Miscanthus sinensis HOM05M007166 ORTHO05M008340 1.0e-11 75.1 95 47.4
Dexi5B01G0039630 Digitaria exilis HOM05M007166 ORTHO05M008340 1.8e-11 74.3 96 49.0
Ot_Chr3_g10041 Oropetium thomaeum HOM05M007166 ORTHO05M008340 1.8e-11 74.3 508 48.2
TRIDC3AG073150 Triticum dicoccoides HOM05M007166 ORTHO05M008340 1.8e-11 74.3 87 51.7
GWHGASIY035259 Secale cereale HOM05M007166 ORTHO05M008340 4.0e-11 73.2 64 62.5
Pahal.5G007200 Panicum hallii HOM05M007166 ORTHO05M008340 1.2e-10 71.6 524 47.9
EJB05_18963 Eragrostis curvula HOM05M007166 ORTHO05M008340 1.5e-10 71.2 420 53.1
Spipo9G0036900 Spirodela polyrhiza HOM05M007166 ORTHO05M008340 3.4e-10 70.1 63 63.5
V3.Lp_chr3_0G25504 Lolium perenne HOM05M007166 ORTHO05M008340 5.7e-10 69.3 91 48.4
Seita.5G465400 Setaria italica HOM05M007166 ORTHO05M008340 9.8e-10 68.6 317 31.9
Sevir.5G471600 Setaria viridis HOM05M007166 ORTHO05M008340 9.8e-10 68.6 317 31.9
TraesCS3A03G1216900 Triticum aestivum HOM05M007166 ORTHO05M008340 1.3e-09 68.2 313 28.1
TRITD3Av1G278920 Triticum turgidum HOM05M007166 ORTHO05M008340 1.3e-09 68.2 313 28.1
Dexi5A01G0039960 Digitaria exilis HOM05M007166 ORTHO05M008340 3.7e-09 66.6 92 47.8
GWHGAORA046368 Cenchrus purpureus HOM05M007166 ORTHO05M008340 4.1e-08 63.2 532 44.9
Sobic.003G440700 Sorghum bicolor HOM05M007166 ORTHO05M008340 4.1e-08 63.2 307 28.7
AET3Gv21213000 Aegilops tauschii HOM05M007166 ORTHO05M008340 2.0e-07 60.8 313 28.4
CALSI_Maker00000237 Calamus simplicifolius HOM05M007166 ORTHO05M008340 7.7e-07 58.9 318 27.7
Asa6G06394 Allium sativum HOM05M007166 ORTHO05M008340 1.3e-06 58.2 149 32.9
PH02Gene48925 Phyllostachys edulis HOM05M007166 ORTHO05M008340 3.8e-06 56.6 41 70.7


User provided reference genes

Program Settings