Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g068670.2 Solanum lycopersicum HOM05M005294 ORTHO05M008346 0.0e+00 1092.4 565 100.0
Solyc01g009380.3 Solanum lycopersicum HOM05M005294 ORTHO05M008346 4.0e-267 923.7 566 83.6
Potri.009G160400 Populus trichocarpa HOM05M005294 ORTHO05M008346 1.3e-238 828.9 568 74.8
Glyma.11G181400 Glycine max HOM05M005294 ORTHO05M008346 3.9e-230 800.8 562 72.2
AT3G44330 Arabidopsis thaliana HOM05M005294 ORTHO05M008346 1.1e-229 799.3 560 72.7
Potri.004G198200 Populus trichocarpa HOM05M005294 ORTHO05M008346 2.5e-229 798.1 568 72.2
Glyma.12G091700 Glycine max HOM05M005294 ORTHO05M008346 1.3e-228 795.8 562 71.9
p5.00_sc00012_p0083 Elaeis guineensis HOM05M005294 ORTHO05M008346 5.5e-224 780.4 550 71.5
p5.00_sc00182_p0056 Elaeis guineensis HOM05M005294 ORTHO05M008346 9.4e-224 779.6 548 71.9
Ma09_g02520 Musa acuminata HOM05M005294 ORTHO05M008346 2.1e-223 778.5 550 72.9
ATR0081G060 Amborella trichopoda HOM05M005294 ORTHO05M008346 6.1e-223 776.9 550 70.7
DDU879G0258 Dioscorea dumetorum HOM05M005294 ORTHO05M008346 6.9e-219 763.5 562 70.3
evm.TU.AsparagusV1_09.91.V1.1 Asparagus officinalis HOM05M005294 ORTHO05M008346 7.7e-218 760.0 550 71.1
CDE08G1681 Ceratophyllum demersum HOM05M005294 ORTHO05M008346 4.2e-216 754.2 532 71.4
Zosma01g33680 Zostera marina HOM05M005294 ORTHO05M008346 1.1e-208 729.6 545 68.1
Spipo7G0036700 Spirodela polyrhiza HOM05M005294 ORTHO05M008346 1.5e-208 729.2 543 68.0
EJB05_10353 Eragrostis curvula HOM05M005294 ORTHO05M008346 2.1e-207 725.3 547 65.3
Aco024555 Ananas comosus HOM05M005294 ORTHO05M008346 8.8e-206 719.9 537 68.2
Dexi6A01G0000230 Digitaria exilis HOM05M005294 ORTHO05M008346 2.6e-205 718.4 547 65.3
HPP92_006357 Vanilla planifolia HOM05M005294 ORTHO05M008346 3.3e-205 718.0 549 66.3
PH02Gene32064 Phyllostachys edulis HOM05M005294 ORTHO05M008346 9.7e-205 716.5 547 64.9
Seita.6G002600 Setaria italica HOM05M005294 ORTHO05M008346 1.7e-204 715.7 547 64.5
Dexi6B01G0000120 Digitaria exilis HOM05M005294 ORTHO05M008346 2.8e-204 714.9 547 65.1
GWHGAZTO093236 Oryza alta HOM05M005294 ORTHO05M008346 4.8e-204 714.1 547 64.5
OsR498G0815027200.01 Oryza sativa ssp. indica HOM05M005294 ORTHO05M008346 4.8e-204 714.1 547 64.9
GWHGASIY039618 Secale cereale HOM05M005294 ORTHO05M008346 4.8e-204 714.1 547 64.9
Horvu_MOREX_7H01G450100 Hordeum vulgare HOM05M005294 ORTHO05M008346 8.2e-204 713.4 547 64.5
PH02Gene43200 Phyllostachys edulis HOM05M005294 ORTHO05M008346 1.1e-203 713.0 547 65.4
Sevir.6G002400 Setaria viridis HOM05M005294 ORTHO05M008346 1.1e-203 713.0 547 64.4
GWHGAZTO046310 Oryza alta HOM05M005294 ORTHO05M008346 1.4e-203 712.6 547 65.1
OsKitaake08g001700 Oryza sativa Kitaake HOM05M005294 ORTHO05M008346 1.4e-203 712.6 547 64.7
Os08g0102100 Oryza sativa ssp. japonica HOM05M005294 ORTHO05M008346 1.4e-203 712.6 547 64.7
OB08G10230 Oryza brachyantha HOM05M005294 ORTHO05M008346 2.4e-203 711.8 547 64.5
TraesCS7A03G0808100 Triticum aestivum HOM05M005294 ORTHO05M008346 2.4e-203 711.8 547 64.7
GWHGAORA013949 Cenchrus purpureus HOM05M005294 ORTHO05M008346 5.3e-203 710.7 547 64.4
Ot_Un89_g13631 Oropetium thomaeum HOM05M005294 ORTHO05M008346 5.3e-203 710.7 547 64.7
GWHGAORA035426 Cenchrus purpureus HOM05M005294 ORTHO05M008346 7.0e-203 710.3 547 64.4
V3.Lp_chr7_0.1G8126 Lolium perenne HOM05M005294 ORTHO05M008346 7.0e-203 710.3 547 64.4
TraesCS7B03G0645600 Triticum aestivum HOM05M005294 ORTHO05M008346 7.0e-203 710.3 547 64.4
AET7Gv20814600 Aegilops tauschii HOM05M005294 ORTHO05M008346 1.2e-202 709.5 547 64.5
Misin07G197500 Miscanthus sinensis HOM05M005294 ORTHO05M008346 1.6e-202 709.1 547 64.5
Pahal.6G002000 Panicum hallii HOM05M005294 ORTHO05M008346 5.9e-202 707.2 547 64.0
MisinT018900 Miscanthus sinensis HOM05M005294 ORTHO05M008346 7.7e-202 706.8 547 64.4
Bradi3g13000 Brachypodium distachyon HOM05M005294 ORTHO05M008346 1.7e-201 705.7 549 64.1
Zm00007a00029925 Zea mays B104 HOM05M005294 ORTHO05M008346 8.5e-201 703.4 547 63.8
Sobic.007G001500 Sorghum bicolor HOM05M005294 ORTHO05M008346 1.1e-200 703.0 547 63.6
Asa8G04699 Allium sativum HOM05M005294 ORTHO05M008346 2.1e-199 698.7 558 64.5
Zm00001eb259900 Zea mays B73 HOM05M005294 ORTHO05M008346 5.7e-197 690.6 549 63.2
CDE02G4012 Ceratophyllum demersum HOM05M005294 ORTHO05M008346 9.8e-197 689.9 553 65.8
Sspon.06G0023760-3D Saccharum spontaneum HOM05M005294 ORTHO05M008346 2.2e-196 688.7 565 61.8
CALSI_Maker00013721 Calamus simplicifolius HOM05M005294 ORTHO05M008346 2.6e-189 665.2 496 70.6
Zm00007a00012946 Zea mays B104 HOM05M005294 ORTHO05M008346 4.1e-187 657.9 528 62.9
TraesCS7D03G0771900 Triticum aestivum HOM05M005294 ORTHO05M008346 2.0e-186 655.6 547 61.2
Mapoly0185s0020 Marchantia polymorpha HOM05M005294 ORTHO05M008346 5.0e-185 651.0 546 60.4
Sspon.06G0023760-2C Saccharum spontaneum HOM05M005294 ORTHO05M008346 3.3e-184 648.3 547 59.2
Pp3c12_11630 Physcomitrium patens HOM05M005294 ORTHO05M008346 5.2e-182 641.0 548 60.0
DDU892G0001 Dioscorea dumetorum HOM05M005294 ORTHO05M008346 6.8e-182 640.6 600 60.3
Zjn_sc00150.1.g00780.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M005294 ORTHO05M008346 7.5e-181 637.1 537 59.8
Zm00001eb198750 Zea mays B73 HOM05M005294 ORTHO05M008346 9.2e-179 630.2 496 62.1
SMO141G0161 Selaginella moellendorffii HOM05M005294 ORTHO05M008346 2.0e-173 612.5 558 57.7
TRITD7Bv1G131040 Triticum turgidum HOM05M005294 ORTHO05M008346 1.8e-166 589.3 589 54.2
TRITD7Av1G174190 Triticum turgidum HOM05M005294 ORTHO05M008346 3.6e-159 565.1 592 52.5
Sspon.06G0023760-1B Saccharum spontaneum HOM05M005294 ORTHO05M008346 3.4e-149 531.9 502 54.8
CBR_g17963 Chara braunii HOM05M005294 ORTHO05M008346 1.9e-147 526.2 564 50.0
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05M005294 ORTHO05M008346 7.6e-133 477.6 534 47.0
Sspon.06G0023760-1P Saccharum spontaneum HOM05M005294 ORTHO05M008346 2.0e-125 453.0 379 62.5
TRIDC7AG045870 Triticum dicoccoides HOM05M005294 ORTHO05M008346 2.2e-124 449.5 326 66.0
SEGI_38882 Sequoiadendron giganteum HOM05M005294 ORTHO05M008346 4.8e-95 352.1 220 77.7
TRIDC7BG037840 Triticum dicoccoides HOM05M005294 ORTHO05M008346 1.3e-87 327.4 242 67.4
CALSI_Maker00024647 Calamus simplicifolius HOM05M005294 ORTHO05M028347 1.5e-51 207.6 529 31.4
SEGI_20304 Sequoiadendron giganteum HOM05M005294 ORTHO05M028347 3.7e-47 193.0 173 60.1
SEGI_19690 Sequoiadendron giganteum HOM05M005294 ORTHO05M238910 2.7e-21 107.1 87 56.3
evm.TU.AsparagusV1_01.3078.V1.1 Asparagus officinalis HOM05M005294 ORTHO05M023755 4.3e-19 99.8 81 65.4
evm.TU.AsparagusV1_03.2543.V1.1 Asparagus officinalis HOM05M005294 ORTHO05M023755 7.4e-19 99.0 83 65.1
SEGI_24377 Sequoiadendron giganteum HOM05M005294 ORTHO05M023755 2.6e-16 90.5 81 54.3
TRIDC1BG031570 Triticum dicoccoides HOM05M005294 ORTHO05M014207 5.6e-11 72.8 70 58.6
AET6Gv20662500 Aegilops tauschii HOM05M005294 ORTHO05M014207 1.3e-10 71.6 70 58.6
Os12g0509400 Oryza sativa ssp. japonica HOM05M005294 ORTHO05M202946 2.2e-07 60.8 49 59.2
Pp3c10_16910 Physcomitrium patens HOM05M005294 ORTHO05M214748 2.5e-06 57.4 108 35.2


User provided reference genes

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