Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g066710.3 Solanum lycopersicum HOM05M003596 ORTHO05M004244 0.0e+00 1442.2 705 100.0
Solyc06g074680.4 Solanum lycopersicum HOM05M003596 ORTHO05M004244 0.0e+00 1103.2 706 75.6
Potri.004G190100 Populus trichocarpa HOM05M003596 ORTHO05M004244 2.4e-301 1037.7 696 71.3
MBI17_g17032_MAGBIO Magnolia biondii HOM05M003596 ORTHO05M004244 2.5e-290 1001.1 697 69.7
AT3G44830 Arabidopsis thaliana HOM05M003596 ORTHO05M004244 1.7e-275 951.8 648 71.0
ATR0820G113 Amborella trichopoda HOM05M003596 ORTHO05M004244 3.7e-262 907.5 674 66.5
ATR0598G040 Amborella trichopoda HOM05M003596 ORTHO05M004244 5.5e-258 893.6 685 63.5
p5.00_sc00100_p0006 Elaeis guineensis HOM05M003596 ORTHO05M004244 3.7e-254 880.9 641 64.3
evm.TU.AsparagusV1_06.465.V1.1 Asparagus officinalis HOM05M003596 ORTHO05M004244 4.1e-253 877.5 641 64.3
Dexi2A01G0019040 Digitaria exilis HOM05M003596 ORTHO05M004244 9.2e-253 876.3 656 62.7
GWHGAZTO098032 Oryza alta HOM05M003596 ORTHO05M004244 2.7e-252 874.8 647 63.1
Dexi2B01G0017780 Digitaria exilis HOM05M003596 ORTHO05M004244 5.9e-252 873.6 656 62.3
Ma09_g15410 Musa acuminata HOM05M003596 ORTHO05M004244 1.0e-251 872.8 668 62.3
OB09G18450 Oryza brachyantha HOM05M003596 ORTHO05M004244 1.7e-251 872.1 647 63.2
OsKitaake09g117200 Oryza sativa Kitaake HOM05M003596 ORTHO05M004244 1.7e-251 872.1 641 63.5
Os09g0444200 Oryza sativa ssp. japonica HOM05M003596 ORTHO05M004244 1.7e-251 872.1 641 63.5
Sobic.002G218500 Sorghum bicolor HOM05M003596 ORTHO05M004244 1.7e-251 872.1 649 62.6
Zm00001eb314300 Zea mays B73 HOM05M003596 ORTHO05M004244 3.9e-251 870.9 648 62.7
Zm00007a00043748 Zea mays B104 HOM05M003596 ORTHO05M004244 3.9e-251 870.9 648 62.7
OsR498G0917554200.01 Oryza sativa ssp. indica HOM05M003596 ORTHO05M004244 5.0e-251 870.5 641 63.5
V3.Lp_chr5_0G13832 Lolium perenne HOM05M003596 ORTHO05M004244 6.6e-251 870.2 642 63.6
Misin03G183500 Miscanthus sinensis HOM05M003596 ORTHO05M004244 6.6e-251 870.2 648 62.2
Seita.2G222000 Setaria italica HOM05M003596 ORTHO05M004244 6.6e-251 870.2 654 62.1
Sevir.2G231700 Setaria viridis HOM05M003596 ORTHO05M004244 6.6e-251 870.2 654 62.1
GWHGAZTO051611 Oryza alta HOM05M003596 ORTHO05M004244 8.6e-251 869.8 641 63.2
Misin04G202100 Miscanthus sinensis HOM05M003596 ORTHO05M004244 1.5e-250 869.0 649 62.4
GWHGAORA007980 Cenchrus purpureus HOM05M003596 ORTHO05M004244 1.9e-250 868.6 654 61.8
Potri.003G063100 Populus trichocarpa HOM05M003596 ORTHO05M004244 1.9e-250 868.6 676 61.5
Pahal.2G282700 Panicum hallii HOM05M003596 ORTHO05M004244 3.3e-250 867.8 654 62.2
HPP92_004378 Vanilla planifolia HOM05M003596 ORTHO05M004244 5.6e-250 867.1 649 63.0
Zm00001eb100310 Zea mays B73 HOM05M003596 ORTHO05M004244 9.5e-250 866.3 642 62.8
Zm00007a00007035 Zea mays B104 HOM05M003596 ORTHO05M004244 9.5e-250 866.3 642 62.8
Aco014791 Ananas comosus HOM05M003596 ORTHO05M004244 6.1e-249 863.6 635 63.9
Potri.001G171000 Populus trichocarpa HOM05M003596 ORTHO05M004244 1.4e-248 862.4 644 63.5
HPP92_016188 Vanilla planifolia HOM05M003596 ORTHO05M004244 5.2e-248 860.5 649 62.4
HPP92_026729 Vanilla planifolia HOM05M003596 ORTHO05M004244 6.8e-248 860.1 650 62.3
Ot_Chr2_g05749 Oropetium thomaeum HOM05M003596 ORTHO05M004244 8.9e-248 859.8 644 62.1
PH02Gene03023 Phyllostachys edulis HOM05M003596 ORTHO05M004244 1.5e-247 859.0 648 62.5
Solyc07g041210.3 Solanum lycopersicum HOM05M003596 ORTHO05M004244 1.5e-247 859.0 652 62.3
Ma03_g07750 Musa acuminata HOM05M003596 ORTHO05M004244 5.8e-247 857.1 672 61.9
TRIDC5AG033400 Triticum dicoccoides HOM05M003596 ORTHO05M004244 1.7e-246 855.5 649 61.8
AET5Gv20507000 Aegilops tauschii HOM05M003596 ORTHO05M004244 6.4e-246 853.6 649 61.8
TraesCS5D03G0501100 Triticum aestivum HOM05M003596 ORTHO05M004244 6.4e-246 853.6 649 61.8
DDU049G0494 Dioscorea dumetorum HOM05M003596 ORTHO05M004244 8.3e-246 853.2 651 63.3
Glyma.13G108100 Glycine max HOM05M003596 ORTHO05M004244 1.9e-245 852.0 663 62.0
Horvu_MOREX_5H01G350900 Hordeum vulgare HOM05M003596 ORTHO05M004244 2.4e-245 851.7 649 61.8
TraesCS5B03G0549200 Triticum aestivum HOM05M003596 ORTHO05M004244 2.4e-245 851.7 649 61.8
TRIDC5BG035290 Triticum dicoccoides HOM05M003596 ORTHO05M004244 2.4e-245 851.7 649 61.8
TRITD5Bv1G125870 Triticum turgidum HOM05M003596 ORTHO05M004244 2.4e-245 851.7 649 61.8
GWHGASIY026112 Secale cereale HOM05M003596 ORTHO05M004244 4.1e-245 850.9 649 61.6
GWHGASIY026132 Secale cereale HOM05M003596 ORTHO05M004244 4.1e-245 850.9 649 61.6
Zosma02g19900 Zostera marina HOM05M003596 ORTHO05M004244 7.0e-245 850.1 633 64.1
Glyma.17G051300 Glycine max HOM05M003596 ORTHO05M004244 2.0e-244 848.6 659 61.5
SMO364G0609 Selaginella moellendorffii HOM05M003596 ORTHO05M004244 1.9e-242 842.0 645 63.4
Glyma.12G084000 Glycine max HOM05M003596 ORTHO05M004244 4.7e-241 837.4 695 60.9
Mapoly0008s0119 Marchantia polymorpha HOM05M003596 ORTHO05M004244 6.2e-241 837.0 674 59.1
Zosma01g00340 Zostera marina HOM05M003596 ORTHO05M004244 8.1e-241 836.6 680 59.1
DDU440G0165 Dioscorea dumetorum HOM05M003596 ORTHO05M004244 1.8e-240 835.5 592 65.5
Solyc03g121960.3 Solanum lycopersicum HOM05M003596 ORTHO05M004244 1.8e-240 835.5 638 62.4
Glyma.07G036400 Glycine max HOM05M003596 ORTHO05M004244 7.5e-239 830.1 642 60.1
AT5G13640 Arabidopsis thaliana HOM05M003596 ORTHO05M004244 3.7e-238 827.8 637 62.2
GWHGAORA047787 Cenchrus purpureus HOM05M003596 ORTHO05M004244 1.8e-232 808.9 657 58.6
EJB05_43235 Eragrostis curvula HOM05M003596 ORTHO05M004244 1.0e-227 793.1 772 51.3
Pp3c2_20030 Physcomitrium patens HOM05M003596 ORTHO05M004244 1.3e-227 792.7 636 58.6
Sspon.02G0013720-2B Saccharum spontaneum HOM05M003596 ORTHO05M004244 1.9e-226 788.9 627 59.2
Sspon.02G0013720-1P Saccharum spontaneum HOM05M003596 ORTHO05M004244 1.4e-224 782.7 627 59.0
TraesCS5A03G0537700 Triticum aestivum HOM05M003596 ORTHO05M004244 4.9e-222 774.2 570 63.3
Sspon.02G0013720-1A Saccharum spontaneum HOM05M003596 ORTHO05M004244 2.9e-206 721.8 536 63.1
Aco002605 Ananas comosus HOM05M003596 ORTHO05M004244 6.4e-206 720.7 526 66.2
Zjn_sc00039.1.g01850.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M003596 ORTHO05M004244 9.6e-202 706.8 527 63.8
GWHGAORA047772 Cenchrus purpureus HOM05M003596 ORTHO05M004244 7.1e-197 690.6 647 52.2
CDE05G0399 Ceratophyllum demersum HOM05M003596 ORTHO05M004244 1.3e-190 669.8 647 55.2
Asa4G05629 Allium sativum HOM05M003596 ORTHO05M004244 1.1e-189 666.8 513 64.1
Spipo20G0011900 Spirodela polyrhiza HOM05M003596 ORTHO05M004244 3.9e-179 631.7 479 61.6
Glyma.16G005800 Glycine max HOM05M003596 ORTHO05M004244 6.3e-169 597.8 474 58.2
Sspon.02G0013720-3D Saccharum spontaneum HOM05M003596 ORTHO05M004244 1.6e-159 566.6 447 59.5
Asa5G02007 Allium sativum HOM05M003596 ORTHO05M004244 8.3e-153 544.3 659 45.1
Zjn_sc00018.1.g04290.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M003596 ORTHO05M004244 3.1e-152 542.3 431 59.4
Bradi4g31540 Brachypodium distachyon HOM05M003596 ORTHO05M004244 8.8e-147 524.2 396 61.4
evm.TU.AsparagusV1_08.2121.V1.1 Asparagus officinalis HOM05M003596 ORTHO05M004244 2.6e-138 496.1 635 45.4
Glyma.11G190400 Glycine max HOM05M003596 ORTHO05M004244 2.5e-117 426.4 390 57.4
SEGI_12392 Sequoiadendron giganteum HOM05M003596 ORTHO05M004244 3.3e-117 426.0 272 70.2
AagrBONN_evm.TU.Sc2ySwM_228.1391 Anthoceros agrestis HOM05M003596 ORTHO05M004244 3.1e-115 419.5 372 54.8
CDE05G2002 Ceratophyllum demersum HOM05M003596 ORTHO05M004244 1.9e-104 383.6 331 57.7
SEGI_12428 Sequoiadendron giganteum HOM05M003596 ORTHO05M004244 1.2e-95 354.4 277 62.8
SEGI_28484 Sequoiadendron giganteum HOM05M003596 ORTHO05M004244 3.4e-90 336.3 227 69.2
MCO05G688 Micromonas commoda HOM05M003596 ORTHO05M004244 6.2e-84 315.5 643 33.7
PRCOL_00006657 Prasinoderma coloniale HOM05M003596 ORTHO05M004244 8.7e-70 268.5 592 30.1
Zm00001eb148010 Zea mays B73 HOM05M003596 ORTHO05M004244 1.6e-68 264.2 170 72.4
Zm00007a00007206 Zea mays B104 HOM05M003596 ORTHO05M004244 1.6e-68 264.2 191 66.5
Zm00001eb342120 Zea mays B73 HOM05M003596 ORTHO05M004244 3.1e-67 260.0 162 74.1
Potri.009G150800 Populus trichocarpa HOM05M003596 ORTHO05M004244 2.6e-61 240.4 149 74.5
Spipo0G0156700 Spirodela polyrhiza HOM05M003596 ORTHO05M004244 1.4e-59 234.6 156 71.8
CDE11G1113 Ceratophyllum demersum HOM05M003596 ORTHO05M004244 3.8e-57 226.5 162 67.9
Cre02.g106400 Chlamydomonas reinhardtii HOM05M003596 ORTHO05M004244 1.3e-52 211.5 294 38.8
Zm00001eb118700 Zea mays B73 HOM05M003596 ORTHO05M004244 1.6e-47 194.5 159 60.4
Zm00001eb331670 Zea mays B73 HOM05M003596 ORTHO05M004244 6.1e-47 192.6 159 59.7
Zm00007a00026394 Zea mays B104 HOM05M001243 ORTHO05M004244 6.1e-47 192.6 126 69.0
CDE05G1782 Ceratophyllum demersum HOM05M003596 ORTHO05M004244 4.8e-44 183.0 521 27.6
CALSI_Maker00014615 Calamus simplicifolius HOM05M003596 ORTHO05M004244 2.9e-33 147.1 102 60.8
SEGI_29094 Sequoiadendron giganteum HOM05M003596 ORTHO05M004244 1.4e-22 111.7 122 49.2
CALSI_Maker00031204 Calamus simplicifolius HOM05M003596 ORTHO05M004244 1.2e-21 108.6 96 54.2
CALSI_Maker00012648 Calamus simplicifolius HOM05M003596 ORTHO05M004244 5.7e-21 106.3 96 53.1
CALSI_Maker00037402 Calamus simplicifolius HOM05M003596 ORTHO05M003863 5.7e-21 106.3 96 53.1
CBR_g32524 Chara braunii HOM05M000008 ORTHO05M000001 1.2e-15 88.6 67 58.2
CALSI_Maker00002684 Calamus simplicifolius HOM05M003596 ORTHO05M004244 7.5e-13 79.3 75 50.7
CALSI_Maker00043471 Calamus simplicifolius HOM05M003596 ORTHO05M004244 7.5e-13 79.3 74 51.4
evm.TU.AsparagusV1_08.1658.V1.1 Asparagus officinalis HOM05M000632 ORTHO05M000517 4.1e-11 73.6 226 28.3
Asa4G05630 Allium sativum HOM05M003596 ORTHO05M004244 3.0e-09 67.4 50 56.0
Asa7G01602 Allium sativum HOM05M000632 ORTHO05M000517 5.0e-09 66.6 224 26.3
Ma04_g07410 Musa acuminata HOM05M000632 ORTHO05M000517 5.0e-09 66.6 256 27.0
CALSI_Maker00046664 Calamus simplicifolius HOM05M002751 ORTHO05M003039 6.6e-09 66.2 73 45.2
Asa7G02035 Allium sativum HOM05M003596 ORTHO05M004244 1.1e-08 65.5 48 58.3
TraesCS4A03G0666500 Triticum aestivum HOM05M000632 ORTHO05M000517 2.5e-08 64.3 245 26.9
CBR_g32529 Chara braunii HOM05M000704 ORTHO05M000022 3.3e-08 63.9 77 41.6
TRIDC4AG039800 Triticum dicoccoides HOM05M000632 ORTHO05M000517 3.3e-08 63.9 246 28.0
TRITD4Av1G186720 Triticum turgidum HOM05M000632 ORTHO05M000517 3.3e-08 63.9 246 28.0
DDU784G0022 Dioscorea dumetorum HOM05M000632 ORTHO05M000517 4.3e-08 63.5 188 31.9
DDU801G0250 Dioscorea dumetorum HOM05M000632 ORTHO05M000517 4.3e-08 63.5 188 31.9
Misin12G205900 Miscanthus sinensis HOM05M002372 ORTHO05M002566 7.3e-08 62.8 190 27.4
GWHGAORA008818 Cenchrus purpureus HOM05M000632 ORTHO05M000517 1.2e-07 62.0 267 27.3
p5.00_sc00236_p0023 Elaeis guineensis HOM05M000632 ORTHO05M000517 2.1e-07 61.2 235 26.4
CALSI_Maker00028718 Calamus simplicifolius HOM05M002372 ORTHO05M002566 2.8e-07 60.8 192 28.6
GWHGAORA047476 Cenchrus purpureus HOM05M000632 ORTHO05M000517 3.6e-07 60.5 246 26.8
Pp3c22_13120 Physcomitrium patens HOM05M002372 ORTHO05M002566 6.2e-07 59.7 200 30.5
Pp3c2_14510 Physcomitrium patens HOM05M000632 ORTHO05M000517 6.2e-07 59.7 239 27.6
MBI16_g39105_MAGBIO Magnolia biondii HOM05M000632 ORTHO05M000517 1.8e-06 58.2 191 31.4
Misin01G270600 Miscanthus sinensis HOM05M000632 ORTHO05M000517 3.1e-06 57.4 233 27.5
Seita.7G048600 Setaria italica HOM05M000632 ORTHO05M000517 4.0e-06 57.0 192 30.7
Sevir.7G054100 Setaria viridis HOM05M000632 ORTHO05M000517 4.0e-06 57.0 192 30.7
GWHGAORA023481 Cenchrus purpureus HOM05M000632 ORTHO05M000517 6.8e-06 56.2 192 30.7
p5.00_sc00181_p0026 Elaeis guineensis HOM05M002372 ORTHO05M002566 8.9e-06 55.8 202 27.2


User provided reference genes

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