Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g065740.2 Solanum lycopersicum HOM05M003334 ORTHO05M003968 7.4e-121 436.4 214 100.0
Potri.001G258100 Populus trichocarpa HOM05M003334 ORTHO05M003968 1.4e-71 272.7 221 62.0
Potri.009G053300 Populus trichocarpa HOM05M003334 ORTHO05M003968 3.8e-69 264.6 221 60.6
Glyma.18G070500 Glycine max HOM05M003334 ORTHO05M003968 1.6e-67 259.2 219 60.7
Glyma.08G335500 Glycine max HOM05M003334 ORTHO05M003968 8.0e-67 256.9 224 60.3
p5.00_sc00072_p0106 Elaeis guineensis HOM05M003334 ORTHO05M003968 9.1e-63 243.4 218 58.3
CALSI_Maker00023747 Calamus simplicifolius HOM05M003334 ORTHO05M003968 5.0e-61 237.7 217 56.7
MBI02_g05665_MAGBIO Magnolia biondii HOM05M003334 ORTHO05M003968 4.2e-60 234.6 224 56.7
AT5G19855 Arabidopsis thaliana HOM05M003334 ORTHO05M003968 8.0e-59 230.3 210 54.8
p5.00_sc00127_p0024 Elaeis guineensis HOM05M003334 ORTHO05M003968 1.5e-57 226.1 219 54.8
Ma04_g27510 Musa acuminata HOM05M003334 ORTHO05M003968 3.4e-57 224.9 205 55.6
CALSI_Maker00017638 Calamus simplicifolius HOM05M003334 ORTHO05M003968 4.4e-57 224.6 239 51.5
MBI04_g36752_MAGBIO Magnolia biondii HOM05M003334 ORTHO05M003968 5.7e-57 224.2 228 53.5
Glyma.14G009900 Glycine max HOM05M003334 ORTHO05M003968 1.3e-56 223.0 211 58.3
ATR0332G008 Amborella trichopoda HOM05M003334 ORTHO05M003968 2.2e-56 222.2 215 54.9
Asa7G05632 Allium sativum HOM05M003334 ORTHO05M003968 8.6e-53 210.3 199 50.8
CDE02G1666 Ceratophyllum demersum HOM05M003334 ORTHO05M003968 1.1e-52 209.9 227 48.5
evm.TU.AsparagusV1_03.1488.V1.1 Asparagus officinalis HOM05M003334 ORTHO05M003968 1.9e-52 209.1 162 60.5
Spipo2G0071300 Spirodela polyrhiza HOM05M003334 ORTHO05M003968 2.1e-51 205.7 221 50.7
Aco028167 Ananas comosus HOM05M003334 ORTHO05M003968 2.8e-51 205.3 214 50.0
DDU693G0607 Dioscorea dumetorum HOM05M003334 ORTHO05M003968 9.8e-49 196.8 161 59.0
Pahal.9G041600 Panicum hallii HOM05M003334 ORTHO05M003968 3.7e-48 194.9 138 65.2
PH02Gene31454 Phyllostachys edulis HOM05M003334 ORTHO05M003968 4.9e-48 194.5 135 63.7
Dexi9B01G0004030 Digitaria exilis HOM05M003334 ORTHO05M003968 6.4e-48 194.1 131 67.2
Seita.9G044500 Setaria italica HOM05M003334 ORTHO05M003968 8.3e-48 193.7 136 64.7
Sevir.9G043900 Setaria viridis HOM05M003334 ORTHO05M003968 8.3e-48 193.7 136 64.7
Misin01G038400 Miscanthus sinensis HOM05M003334 ORTHO05M003968 1.1e-47 193.4 137 63.5
GWHGAORA020153 Cenchrus purpureus HOM05M003334 ORTHO05M003968 1.4e-47 193.0 136 63.2
Dexi9A01G0004330 Digitaria exilis HOM05M003334 ORTHO05M003968 1.9e-47 192.6 137 65.0
V3.Lp_chr4_0G3090 Lolium perenne HOM05M003334 ORTHO05M003968 1.9e-47 192.6 137 64.2
Sspon.01G0030800-2D Saccharum spontaneum HOM05M003334 ORTHO05M003968 1.9e-47 192.6 128 68.0
Bradi1g04620 Brachypodium distachyon HOM05M003334 ORTHO05M003968 2.4e-47 192.2 131 66.4
GWHGAORA050458 Cenchrus purpureus HOM05M003334 ORTHO05M003968 3.2e-47 191.8 143 62.2
Zm00001eb212460 Zea mays B73 HOM05M003334 ORTHO05M003968 3.2e-47 191.8 135 63.0
Zm00007a00019155 Zea mays B104 HOM05M003334 ORTHO05M003968 3.2e-47 191.8 135 63.0
Horvu_MOREX_5H01G648900 Hordeum vulgare HOM05M003334 ORTHO05M003968 4.1e-47 191.4 128 67.2
GWHGASIY029309 Secale cereale HOM05M003334 ORTHO05M003968 4.1e-47 191.4 128 67.2
GWHGASIY029347 Secale cereale HOM05M003334 ORTHO05M003968 4.1e-47 191.4 128 67.2
TraesCS5B03G1147500 Triticum aestivum HOM05M003334 ORTHO05M003968 4.1e-47 191.4 128 67.2
TRITD5Bv1G225320 Triticum turgidum HOM05M003334 ORTHO05M003968 4.1e-47 191.4 128 67.2
AET5Gv21063700 Aegilops tauschii HOM05M003334 ORTHO05M003968 5.4e-47 191.0 128 67.2
TraesCS5A03G1085400 Triticum aestivum HOM05M003334 ORTHO05M003968 5.4e-47 191.0 128 67.2
TraesCS5D03G1037500 Triticum aestivum HOM05M003334 ORTHO05M003968 5.4e-47 191.0 128 67.2
TRIDC5AG065940 Triticum dicoccoides HOM05M003334 ORTHO05M003968 5.4e-47 191.0 128 67.2
TRITD5Av1G226340 Triticum turgidum HOM05M003334 ORTHO05M003968 5.4e-47 191.0 128 67.2
EJB05_03929 Eragrostis curvula HOM05M003334 ORTHO05M003968 7.0e-47 190.7 148 60.1
Misin02G024100 Miscanthus sinensis HOM05M003334 ORTHO05M003968 7.0e-47 190.7 137 62.0
PH02Gene06959 Phyllostachys edulis HOM05M003334 ORTHO05M003968 9.2e-47 190.3 143 60.1
Solyc01g087190.4 Solanum lycopersicum HOM05M003334 ORTHO05M003968 9.2e-47 190.3 215 47.4
MBI04_g40116_MAGBIO Magnolia biondii HOM05M003334 ORTHO05M003968 1.6e-46 189.5 239 45.6
GWHGAZTO027251 Oryza alta HOM05M003334 ORTHO05M003968 1.6e-46 189.5 137 64.2
GWHGAZTO077120 Oryza alta HOM05M003334 ORTHO05M003968 1.6e-46 189.5 137 64.2
Ot_Chr4_g07943 Oropetium thomaeum HOM05M003334 ORTHO05M003968 2.0e-46 189.1 140 62.1
OsKitaake03g383700 Oryza sativa Kitaake HOM05M003334 ORTHO05M003968 2.0e-46 189.1 137 63.5
OsR498G0307244500.01 Oryza sativa ssp. indica HOM05M003334 ORTHO05M003968 2.0e-46 189.1 137 63.5
Os03g0807900 Oryza sativa ssp. japonica HOM05M003334 ORTHO05M003968 2.0e-46 189.1 137 63.5
OB03G45160 Oryza brachyantha HOM05M003334 ORTHO05M003968 2.7e-46 188.7 131 64.9
Sobic.001G046000 Sorghum bicolor HOM05M003334 ORTHO05M003968 2.7e-46 188.7 128 67.2
OsKitaake07g196700 Oryza sativa Kitaake HOM05M003334 ORTHO05M003968 2.3e-45 185.7 132 62.9
Os07g0569600 Oryza sativa ssp. japonica HOM05M003334 ORTHO05M003968 2.3e-45 185.7 132 62.9
OB07G25020 Oryza brachyantha HOM05M003334 ORTHO05M003968 3.3e-44 181.8 132 62.9
Ot_Chr7_g16582 Oropetium thomaeum HOM05M003334 ORTHO05M003968 7.3e-44 180.6 141 56.7
Misin03G320800 Miscanthus sinensis HOM05M003334 ORTHO05M003968 8.0e-43 177.2 131 59.5
Zosma05g05220 Zostera marina HOM05M003334 ORTHO05M003968 8.0e-43 177.2 140 58.6
Horvu_MOREX_2H01G260100 Hordeum vulgare HOM05M003334 ORTHO05M003968 1.1e-42 176.8 133 58.6
Sspon.02G0004800-1A Saccharum spontaneum HOM05M003334 ORTHO05M003968 1.4e-42 176.4 137 57.7
EJB05_11708 Eragrostis curvula HOM05M003334 ORTHO05M003968 1.8e-42 176.0 131 58.8
EJB05_11724 Eragrostis curvula HOM05M003334 ORTHO05M003968 1.8e-42 176.0 131 58.8
MisinT469500 Miscanthus sinensis HOM05M003334 ORTHO05M003968 1.8e-42 176.0 131 58.8
Zjn_sc00001.1.g06280.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M003334 ORTHO05M003968 3.1e-42 175.3 131 58.8
TraesCS2A03G0414700 Triticum aestivum HOM05M003334 ORTHO05M003968 4.0e-42 174.9 134 58.2
TRITD2Av1G071710 Triticum turgidum HOM05M003334 ORTHO05M003968 4.0e-42 174.9 134 58.2
Pahal.2G416100 Panicum hallii HOM05M003334 ORTHO05M003968 6.8e-42 174.1 213 44.1
GWHGASIY007730 Secale cereale HOM05M003334 ORTHO05M003968 6.8e-42 174.1 133 57.9
TraesCS2B03G0544400 Triticum aestivum HOM05M003334 ORTHO05M003968 6.8e-42 174.1 133 57.9
TraesCS2D03G0431500 Triticum aestivum HOM05M003334 ORTHO05M003968 6.8e-42 174.1 133 57.9
TRITD2Bv1G080640 Triticum turgidum HOM05M003334 ORTHO05M003968 6.8e-42 174.1 133 57.9
Seita.2G358500 Setaria italica HOM05M003334 ORTHO05M003968 8.9e-42 173.7 168 49.4
Sevir.2G369600 Setaria viridis HOM05M003334 ORTHO05M003968 8.9e-42 173.7 168 49.4
Zm00001eb324740 Zea mays B73 HOM05M003334 ORTHO05M003968 1.5e-41 172.9 131 58.0
CALSI_Maker00030108 Calamus simplicifolius HOM05M003334 ORTHO05M003968 2.0e-41 172.6 108 71.3
CALSI_Maker00031415 Calamus simplicifolius HOM05M003334 ORTHO05M003968 2.0e-41 172.6 108 71.3
TRIDC2AG025570 Triticum dicoccoides HOM05M003334 ORTHO05M003968 2.0e-41 172.6 129 58.9
HPP92_024873 Vanilla planifolia HOM05M003334 ORTHO05M003968 4.4e-41 171.4 155 56.1
Bradi1g24147 Brachypodium distachyon HOM05M003334 ORTHO05M003968 7.5e-41 170.6 133 56.4
GWHGAORA006580 Cenchrus purpureus HOM05M003334 ORTHO05M003968 7.5e-41 170.6 135 56.3
Zjn_sc00014.1.g07890.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M003334 ORTHO05M003968 7.5e-41 170.6 136 59.6
PH02Gene42775 Phyllostachys edulis HOM05M003334 ORTHO05M003968 2.2e-40 169.1 174 48.3
V3.Lp_chr2_0G6468 Lolium perenne HOM05M003334 ORTHO05M003968 4.9e-40 167.9 130 57.7
Pp3c9_10480 Physcomitrium patens HOM05M003334 ORTHO05M003968 8.3e-40 167.2 219 42.5
Asa7G05633 Allium sativum HOM05M003334 ORTHO05M003968 1.1e-39 166.8 176 46.0
GWHGAORA049192 Cenchrus purpureus HOM05M003334 ORTHO05M003968 1.2e-38 163.3 129 57.4
GWHGAZTO044643 Oryza alta HOM05M003334 ORTHO05M003968 2.7e-38 162.2 122 60.7
Pp3c12_1270 Physcomitrium patens HOM05M003334 ORTHO05M003968 2.7e-38 162.2 125 60.0
CALSI_Maker00006235 Calamus simplicifolius HOM05M003334 ORTHO05M003968 4.6e-38 161.4 108 66.7
TRIDC2BG030010 Triticum dicoccoides HOM05M003334 ORTHO05M003968 7.8e-38 160.6 130 56.2
GWHGAZTO092154 Oryza alta HOM05M003334 ORTHO05M003968 1.0e-37 160.2 126 58.7
Zm00007a00021395 Zea mays B104 HOM05M003334 ORTHO05M003968 1.0e-37 160.2 106 67.0
SMO275G0040 Selaginella moellendorffii HOM05M003334 ORTHO05M003968 3.0e-37 158.7 122 59.8
Mapoly0069s0007 Marchantia polymorpha HOM05M003334 ORTHO05M003968 1.5e-36 156.4 129 55.8
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05M003334 ORTHO05M003968 1.9e-36 156.0 224 40.6
Sspon.02G0004800-1P Saccharum spontaneum HOM05M003334 ORTHO05M003968 7.3e-36 154.1 127 55.9
Sspon.02G0004800-2D Saccharum spontaneum HOM05M003334 ORTHO05M003968 7.3e-36 154.1 127 55.9
Mapoly0002s0228 Marchantia polymorpha HOM05M003334 ORTHO05M003968 6.2e-35 151.0 130 54.6
Zm00007a00001801 Zea mays B104 HOM05M003334 ORTHO05M003968 2.0e-33 146.0 116 56.0
CBR_g21098 Chara braunii HOM05M003334 ORTHO05M003968 1.1e-31 140.2 117 52.1
SEGI_02367 Sequoiadendron giganteum HOM05M003334 ORTHO05M003968 3.2e-31 138.7 106 58.5
Sobic.002G345200 Sorghum bicolor HOM05M003334 ORTHO05M003968 3.3e-28 128.6 96 60.4
Sspon.01G0030800-1A Saccharum spontaneum HOM05M003334 ORTHO05M003968 4.0e-26 121.7 77 70.1
CALSI_Maker00006239 Calamus simplicifolius HOM05M003334 ORTHO05M003968 8.4e-24 114.0 82 64.6
Dexi2A01G0030710 Digitaria exilis HOM05M003334 ORTHO05M003968 6.0e-22 107.8 129 41.1
Dexi2B01G0029530 Digitaria exilis HOM05M003334 ORTHO05M003968 6.0e-22 107.8 132 41.7
TRIDC5BG070780 Triticum dicoccoides HOM05M003334 ORTHO05M003968 4.0e-18 95.1 70 60.0


User provided reference genes

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