Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g065730.3 Solanum lycopersicum HOM05M003006 ORTHO05M003336 5.8e-203 709.9 360 100.0
Potri.009G053200 Populus trichocarpa HOM05M003006 ORTHO05M003336 1.9e-100 369.4 257 70.8
Potri.001G258000 Populus trichocarpa HOM05M003006 ORTHO05M003336 3.2e-100 368.6 258 71.3
Glyma.08G335600 Glycine max HOM05M003006 ORTHO05M003336 1.3e-98 363.2 260 69.2
Glyma.18G070600 Glycine max HOM05M003006 ORTHO05M003336 2.1e-96 355.9 261 67.8
p5.00_sc00072_p0099 Elaeis guineensis HOM05M003006 ORTHO05M003336 5.8e-94 347.8 258 64.0
p5.00_sc00072_p0100 Elaeis guineensis HOM05M003006 ORTHO05M003336 4.9e-93 344.7 257 63.8
MBI04_g36070_MAGBIO Magnolia biondii HOM05M003006 ORTHO05M003336 2.7e-91 339.0 263 64.3
AT3G20890 Arabidopsis thaliana HOM05M003006 ORTHO05M003336 2.0e-86 322.8 295 58.6
ATR0332G107 Amborella trichopoda HOM05M003006 ORTHO05M003336 5.8e-86 321.2 261 61.7
Spipo24G0014200 Spirodela polyrhiza HOM05M003006 ORTHO05M003336 2.7e-83 312.4 249 60.2
Asa4G01975 Allium sativum HOM05M003006 ORTHO05M003336 2.3e-74 282.7 257 53.7
Mapoly0052s0111 Marchantia polymorpha HOM05M003006 ORTHO05M003336 2.6e-70 269.2 264 54.9
SMO146G0051 Selaginella moellendorffii HOM05M003006 ORTHO05M003336 3.4e-70 268.9 273 52.7
AagrBONN_evm.TU.Sc2ySwM_228.5498 Anthoceros agrestis HOM05M003006 ORTHO05M003336 6.0e-67 258.1 260 52.7
Potri.005G101200 Populus trichocarpa HOM05M003006 ORTHO05M003336 6.0e-67 258.1 258 53.1
Sspon.07G0001200-1T Saccharum spontaneum HOM05M003006 ORTHO05M003336 3.0e-66 255.8 481 33.7
Glyma.09G198500 Glycine max HOM05M003006 ORTHO05M003336 1.1e-63 247.3 259 50.6
CBR_g11152 Chara braunii HOM05M003006 ORTHO05M003336 1.4e-63 246.9 215 58.6
Glyma.16G116600 Glycine max HOM05M003006 ORTHO05M003336 1.4e-63 246.9 259 51.0
Pp3c12_3660 Physcomitrium patens HOM05M003006 ORTHO05M003336 1.8e-63 246.5 269 48.7
CBR_g11151 Chara braunii HOM05M003006 ORTHO05M003336 3.1e-63 245.7 207 59.4
MBI05_g09437_MAGBIO Magnolia biondii HOM05M003006 ORTHO05M003336 4.0e-63 245.4 254 53.5
Misin16G249000 Miscanthus sinensis HOM05M003006 ORTHO05M003336 4.5e-62 241.9 580 30.0
Misin17G257200 Miscanthus sinensis HOM05M003006 ORTHO05M003336 1.1e-60 237.3 532 30.5
evm.TU.AsparagusV1_01.1051.V1.1 Asparagus officinalis HOM05M003006 ORTHO05M003336 2.5e-60 236.1 266 48.1
Zosma01g19890 Zostera marina HOM05M003006 ORTHO05M003336 3.2e-60 235.7 267 49.8
Sobic.009G246950 Sorghum bicolor HOM05M003006 ORTHO05M003336 4.2e-60 235.3 531 30.1
Zjn_sc00012.1.g00660.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M003006 ORTHO05M003336 5.5e-60 235.0 273 52.0
Ot_Chr4_g00115 Oropetium thomaeum HOM05M003006 ORTHO05M003336 9.3e-60 234.2 208 58.2
V3.Lp_chr6_0G1082 Lolium perenne HOM05M003006 ORTHO05M003336 1.2e-59 233.8 258 50.4
TRITD6Av1G006830 Triticum turgidum HOM05M003006 ORTHO05M003336 1.2e-59 233.8 256 50.0
Zjn_sc00027.1.g00620.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M003006 ORTHO05M003336 1.2e-59 233.8 239 53.1
Ot_Chr5_g03746 Oropetium thomaeum HOM05M003006 ORTHO05M003336 4.6e-59 231.9 208 57.2
AET6Gv20086100 Aegilops tauschii HOM05M003006 ORTHO05M003336 6.1e-59 231.5 210 56.7
TraesCS6D03G0081400 Triticum aestivum HOM05M003006 ORTHO05M003336 6.1e-59 231.5 210 56.7
Zm00001eb344790 Zea mays B73 HOM05M003006 ORTHO05M003336 6.1e-59 231.5 208 56.7
Zm00007a00052429 Zea mays B104 HOM05M003006 ORTHO05M003336 6.1e-59 231.5 208 56.7
GWHGAORA038978 Cenchrus purpureus HOM05M003006 ORTHO05M003336 7.9e-59 231.1 208 57.2
Horvu_MOREX_6H01G044100 Hordeum vulgare HOM05M003006 ORTHO05M003336 7.9e-59 231.1 209 56.9
Seita.3G131600 Setaria italica HOM05M003006 ORTHO05M003336 7.9e-59 231.1 208 57.2
Sevir.3G133100 Setaria viridis HOM05M003006 ORTHO05M003336 7.9e-59 231.1 208 57.2
TraesCS6A03G0079600 Triticum aestivum HOM05M003006 ORTHO05M003336 7.9e-59 231.1 209 56.5
GWHGAORA004014 Cenchrus purpureus HOM05M003006 ORTHO05M003336 1.0e-58 230.7 208 57.2
Sspon.07G0001200-3C Saccharum spontaneum HOM05M003006 ORTHO05M003336 1.3e-58 230.3 210 57.1
Sspon.07G0001200-3P Saccharum spontaneum HOM05M003006 ORTHO05M003336 1.3e-58 230.3 210 57.1
TRIDC6AG004300 Triticum dicoccoides HOM05M003006 ORTHO05M003336 1.3e-58 230.3 209 56.5
TRITD6Bv1G010020 Triticum turgidum HOM05M003006 ORTHO05M003336 1.3e-58 230.3 209 56.5
OsKitaake11g019800 Oryza sativa Kitaake HOM05M003006 ORTHO05M003336 1.8e-58 229.9 207 58.0
Pahal.3G165000 Panicum hallii HOM05M003006 ORTHO05M003336 1.8e-58 229.9 208 56.7
Bradi3g01310 Brachypodium distachyon HOM05M003006 ORTHO05M003336 2.3e-58 229.6 254 49.2
Os11g0133600 Oryza sativa ssp. japonica HOM05M003006 ORTHO05M003336 2.3e-58 229.6 253 49.8
Sspon.07G0001200-1P Saccharum spontaneum HOM05M003006 ORTHO05M003336 2.3e-58 229.6 460 32.4
Spipo11G0046400 Spirodela polyrhiza HOM05M003006 ORTHO05M003336 2.3e-58 229.6 279 46.6
GWHGASIY023589 Secale cereale HOM05M003006 ORTHO05M003336 3.9e-58 228.8 209 56.0
TraesCS6B03G0114300 Triticum aestivum HOM05M003006 ORTHO05M003336 5.1e-58 228.4 210 55.7
Zm00001eb297160 Zea mays B73 HOM05M003006 ORTHO05M003336 5.1e-58 228.4 209 56.9
Aco009198 Ananas comosus HOM05M003006 ORTHO05M003336 8.7e-58 227.6 209 55.0
OsR498G1119374500.01 Oryza sativa ssp. indica HOM05M003006 ORTHO05M003336 1.1e-57 227.3 254 49.2
GWHGAZTO021599 Oryza alta HOM05M003006 ORTHO05M003336 1.5e-57 226.9 208 56.7
PH02Gene48127 Phyllostachys edulis HOM05M003006 ORTHO05M003336 1.5e-57 226.9 208 55.8
PH02Gene48129 Phyllostachys edulis HOM05M003006 ORTHO05M003336 1.5e-57 226.9 208 55.8
PH02Gene50984 Phyllostachys edulis HOM05M003006 ORTHO05M003336 1.5e-57 226.9 208 55.8
Sspon.07G0001200-2B Saccharum spontaneum HOM05M003006 ORTHO05M003336 1.5e-57 226.9 366 40.7
GWHGASIY023536 Secale cereale HOM05M003006 ORTHO05M003336 1.5e-57 226.9 208 55.8
Ma11_g15390 Musa acuminata HOM05M003006 ORTHO05M003336 1.9e-57 226.5 218 51.8
PH02Gene28063 Phyllostachys edulis HOM05M003006 ORTHO05M003336 2.5e-57 226.1 208 55.8
GWHGAZTO073213 Oryza alta HOM05M003006 ORTHO05M003336 3.3e-57 225.7 200 58.0
OsR498G1220884900.01 Oryza sativa ssp. indica HOM05M003006 ORTHO05M003336 3.3e-57 225.7 254 48.4
p5.00_sc00017_p0002 Elaeis guineensis HOM05M003006 ORTHO05M003336 5.7e-57 224.9 208 54.8
Zm00001eb323990 Zea mays B73 HOM05M003006 ORTHO05M003336 5.7e-57 224.9 211 55.9
HPP92_008381 Vanilla planifolia HOM05M003006 ORTHO05M003336 9.7e-57 224.2 246 48.0
OB02G45420 Oryza brachyantha HOM05M003006 ORTHO05M003336 1.3e-56 223.8 210 55.7
Zm00007a00040894 Zea mays B104 HOM05M003006 ORTHO05M003336 1.3e-56 223.8 256 49.2
p5.00_sc00014_p0189 Elaeis guineensis HOM05M003006 ORTHO05M003336 1.6e-56 223.4 207 55.1
OsKitaake12g023700 Oryza sativa Kitaake HOM05M003006 ORTHO05M003336 1.6e-56 223.4 254 48.4
Os12g0131000 Oryza sativa ssp. japonica HOM05M003006 ORTHO05M003336 1.6e-56 223.4 254 48.4
Ma01_g11260 Musa acuminata HOM05M003006 ORTHO05M003336 2.2e-56 223.0 240 51.2
DDU292G0003 Dioscorea dumetorum HOM05M003006 ORTHO05M003336 2.8e-56 222.6 260 46.5
DDU469G0341 Dioscorea dumetorum HOM05M003006 ORTHO05M003336 2.8e-56 222.6 260 46.5
Spipo16G0024800 Spirodela polyrhiza HOM05M003006 ORTHO05M003336 3.7e-56 222.2 266 47.4
CALSI_Maker00025141 Calamus simplicifolius HOM05M003006 ORTHO05M003336 6.3e-56 221.5 208 53.4
Solyc02g038816.1 Solanum lycopersicum HOM05M003006 ORTHO05M003336 6.3e-56 221.5 256 46.9
DDU543G0020 Dioscorea dumetorum HOM05M003006 ORTHO05M003336 4.1e-55 218.8 220 53.6
Zm00007a00025731 Zea mays B104 HOM05M003006 ORTHO05M003336 9.0e-55 217.6 211 54.5
Zm00001eb365130 Zea mays B73 HOM05M003006 ORTHO05M003336 3.4e-54 215.7 211 54.5
CDE02G1874 Ceratophyllum demersum HOM05M003006 ORTHO05M003336 4.5e-54 215.3 252 47.6
Zm00007a00003725 Zea mays B104 HOM05M003006 ORTHO05M003336 2.2e-53 213.0 259 47.5
EJB05_36327 Eragrostis curvula HOM05M003006 ORTHO05M003336 3.8e-53 212.2 238 49.2
MCO11G541 Micromonas commoda HOM05M003006 ORTHO05M003336 5.0e-53 211.8 234 49.1
Asa3G01734 Allium sativum HOM05M003006 ORTHO05M003336 1.4e-52 210.3 258 46.5
Solyc03g032140.4 Solanum lycopersicum HOM05M003006 ORTHO05M003336 9.4e-52 207.6 210 52.4
CALSI_Maker00012662 Calamus simplicifolius HOM05M003006 ORTHO05M003336 4.3e-49 198.7 208 49.5
CALSI_Maker00018551 Calamus simplicifolius HOM05M003006 ORTHO05M003336 4.3e-49 198.7 208 49.5
CALSI_Maker00044773 Calamus simplicifolius HOM05M003006 ORTHO05M003336 2.2e-48 196.4 208 49.0
AagrBONN_evm.TU.Sc2ySwM_228.1613 Anthoceros agrestis HOM05M003006 ORTHO05M003336 6.3e-48 194.9 347 36.0
Pp3c7_8760 Physcomitrium patens HOM05M003006 ORTHO05M003336 3.1e-47 192.6 350 34.0
Mapoly0105s0060 Marchantia polymorpha HOM05M003006 ORTHO05M003336 4.1e-47 192.2 346 34.4
Mapoly0009s0200 Marchantia polymorpha HOM05M003006 ORTHO05M003336 2.0e-46 189.9 184 53.8
Pp3c11_24660 Physcomitrium patens HOM05M003006 ORTHO05M003336 2.6e-46 189.5 354 33.9
evm.TU.AsparagusV1_07.3730.V1.1 Asparagus officinalis HOM05M003006 ORTHO05M003336 2.2e-45 186.4 159 57.2
CBR_g98 Chara braunii HOM05M002600 ORTHO05M003274 2.9e-45 186.0 355 31.8
p5.00_sc00127_p0027 Elaeis guineensis HOM05M003006 ORTHO05M003336 7.2e-44 181.4 141 59.6
SMO165G0140 Selaginella moellendorffii HOM05M003006 ORTHO05M003336 2.3e-42 176.4 338 32.5
Pp3c7_8766 Physcomitrium patens HOM05M003006 ORTHO05M003336 3.5e-38 162.5 320 31.9
Sspon.07G0001200-4D Saccharum spontaneum HOM05M003006 ORTHO05M003336 1.1e-31 141.0 128 57.8
AT5G66010 Arabidopsis thaliana HOM05M003006 ORTHO05M003336 1.6e-30 137.1 158 45.6
Cre12.g494550 Chlamydomonas reinhardtii HOM05M003006 ORTHO05M003336 5.9e-30 135.2 306 28.8
PRCOL_00005120 Prasinoderma coloniale HOM05M003006 ORTHO05M003336 2.9e-29 132.9 206 40.8
Cre14.g628100 Chlamydomonas reinhardtii HOM05M003006 ORTHO05M003336 1.0e-26 124.4 196 39.8
Cre17.g741850 Chlamydomonas reinhardtii HOM05M003006 ORTHO05M003336 2.6e-25 119.8 310 28.7
Sspon.07G0001200-2P Saccharum spontaneum HOM05M003006 ORTHO05M003336 1.6e-22 110.5 92 57.6
CDE04G3028 Ceratophyllum demersum HOM05M006899 ORTHO05M008230 5.0e-21 105.5 126 46.8
Asa4G04498 Allium sativum HOM05M003006 ORTHO05M003336 1.8e-18 97.1 94 48.9
p5.00_sc00127_p0026 Elaeis guineensis HOM05M003006 ORTHO05M003336 5.2e-18 95.5 68 58.8
Asa5G05117 Allium sativum HOM05M003006 ORTHO05M003336 4.4e-17 92.4 101 43.6
Asa5G05109 Allium sativum HOM05M003006 ORTHO05M003336 9.8e-17 91.3 80 52.5
MCO05G579 Micromonas commoda HOM05M003006 ORTHO05M003336 1.7e-16 90.5 153 35.3
Asa6G05840 Allium sativum HOM05M003006 ORTHO05M003336 3.8e-13 79.3 70 50.0
Cre04.g219950 Chlamydomonas reinhardtii HOM05M003006 ORTHO05M094049 1.5e-09 67.4 91 38.5
AT1G45100 Arabidopsis thaliana HOM05M000548 ORTHO05M068379 1.4e-07 60.8 281 26.0
Asa6G02085 Allium sativum HOM05M003006 ORTHO05M003336 1.2e-06 57.8 47 57.4


User provided reference genes

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