Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g062310.2 Solanum lycopersicum HOM05M002623 ORTHO05M003875 0.0e+00 2701.4 1398 100.0
Potri.001G274500 Populus trichocarpa HOM05M002623 ORTHO05M003875 0.0e+00 1885.2 1355 70.1
Glyma.14G036800 Glycine max HOM05M002623 ORTHO05M003875 0.0e+00 1832.4 1357 68.5
p5.00_sc00094_p0015 Elaeis guineensis HOM05M002623 ORTHO05M003875 0.0e+00 1807.3 1343 67.6
AT2G26780 Arabidopsis thaliana HOM05M002623 ORTHO05M003875 0.0e+00 1787.3 1353 66.4
evm.TU.AsparagusV1_08.3041.V1.1 Asparagus officinalis HOM05M002623 ORTHO05M003875 0.0e+00 1769.2 1339 66.0
MBI19_g07497_MAGBIO Magnolia biondii HOM05M002623 ORTHO05M003875 0.0e+00 1750.3 1355 66.8
Aco007226 Ananas comosus HOM05M002623 ORTHO05M003875 0.0e+00 1737.2 1361 65.0
Ma07_g22880 Musa acuminata HOM05M002623 ORTHO05M003875 0.0e+00 1718.0 1351 64.3
ATR0307G114 Amborella trichopoda HOM05M002623 ORTHO05M003875 0.0e+00 1690.2 1341 64.1
GWHGASIY025385 Secale cereale HOM05M002623 ORTHO05M003875 0.0e+00 1681.0 1387 61.5
TraesCS5B03G0378100 Triticum aestivum HOM05M002623 ORTHO05M003875 0.0e+00 1677.5 1341 62.7
EJB05_55165 Eragrostis curvula HOM05M002623 ORTHO05M003875 0.0e+00 1676.8 1353 61.9
Zosma02g18460 Zostera marina HOM05M002623 ORTHO05M003875 0.0e+00 1676.8 1362 63.0
EJB05_29648 Eragrostis curvula HOM05M002623 ORTHO05M003875 0.0e+00 1676.4 1353 61.9
TRIDC5BG024330 Triticum dicoccoides HOM05M002623 ORTHO05M003875 0.0e+00 1675.6 1341 62.6
PH02Gene09888 Phyllostachys edulis HOM05M002623 ORTHO05M003875 0.0e+00 1675.2 1336 62.3
TRITD5Bv1G086310 Triticum turgidum HOM05M002623 ORTHO05M003875 0.0e+00 1675.2 1341 62.6
AET5Gv20364000 Aegilops tauschii HOM05M002623 ORTHO05M003875 0.0e+00 1674.4 1341 62.8
Pahal.8G022100 Panicum hallii HOM05M002623 ORTHO05M003875 0.0e+00 1674.4 1354 61.4
Sevir.7G324300 Setaria viridis HOM05M002623 ORTHO05M003875 0.0e+00 1674.4 1339 61.8
Horvu_MOREX_5H01G240500 Hordeum vulgare HOM05M002623 ORTHO05M003875 0.0e+00 1674.1 1357 62.2
Seita.7G314600 Setaria italica HOM05M002623 ORTHO05M003875 0.0e+00 1671.4 1350 61.3
Seita.8G022300 Setaria italica HOM05M002623 ORTHO05M003875 0.0e+00 1671.0 1354 61.3
TRIDC5AG023340 Triticum dicoccoides HOM05M002623 ORTHO05M003875 0.0e+00 1671.0 1341 62.5
TraesCS5A03G0386500 Triticum aestivum HOM05M002623 ORTHO05M003875 0.0e+00 1670.2 1341 62.5
TRITD5Av1G105490 Triticum turgidum HOM05M002623 ORTHO05M003875 0.0e+00 1670.2 1341 62.5
GWHGAORA005561 Cenchrus purpureus HOM05M002623 ORTHO05M003875 0.0e+00 1667.9 1354 61.3
Sobic.005G026200 Sorghum bicolor HOM05M002623 ORTHO05M003875 0.0e+00 1667.9 1351 61.6
Sevir.8G024800 Setaria viridis HOM05M002623 ORTHO05M003875 0.0e+00 1665.6 1354 61.1
OsKitaake11g022200 Oryza sativa Kitaake HOM05M002623 ORTHO05M003875 0.0e+00 1664.0 1349 61.5
OsKitaake12g026400 Oryza sativa Kitaake HOM05M002623 ORTHO05M003875 0.0e+00 1662.5 1349 61.6
OsR498G1220895400.01 Oryza sativa ssp. indica HOM05M002623 ORTHO05M003875 0.0e+00 1661.7 1349 61.6
Pahal.3G020000 Panicum hallii HOM05M002623 ORTHO05M003875 0.0e+00 1661.4 1354 61.2
GWHGAZTO013588 Oryza alta HOM05M002623 ORTHO05M003875 0.0e+00 1660.2 1349 61.6
OsR498G1119384600.01 Oryza sativa ssp. indica HOM05M002623 ORTHO05M003875 0.0e+00 1659.8 1349 61.5
Zm00001eb196280 Zea mays B73 HOM05M002623 ORTHO05M003875 0.0e+00 1656.0 1334 61.8
Bradi4g43517 Brachypodium distachyon HOM05M002623 ORTHO05M003875 0.0e+00 1650.2 1344 61.8
V3.Lp_chr5_0G8170 Lolium perenne HOM05M002623 ORTHO05M003875 0.0e+00 1649.4 1340 61.7
GWHGAZTO065527 Oryza alta HOM05M002623 ORTHO05M003875 0.0e+00 1648.3 1340 61.3
GWHGAZTO062552 Oryza alta HOM05M002623 ORTHO05M003875 0.0e+00 1645.6 1340 61.2
OB11G12000 Oryza brachyantha HOM05M002623 ORTHO05M003875 0.0e+00 1640.9 1341 61.4
OB12G12320 Oryza brachyantha HOM05M002623 ORTHO05M003875 0.0e+00 1637.5 1341 61.1
TraesCS5D03G0379800 Triticum aestivum HOM05M002623 ORTHO05M003875 0.0e+00 1613.6 1340 61.2
GWHGAORA010878 Cenchrus purpureus HOM05M002623 ORTHO05M003875 0.0e+00 1599.7 1339 59.7
GWHGAORA042986 Cenchrus purpureus HOM05M002623 ORTHO05M003875 0.0e+00 1575.5 1339 59.6
Spipo22G0019000 Spirodela polyrhiza HOM05M002623 ORTHO05M003875 0.0e+00 1565.4 1226 65.0
Sspon.05G0020280-1A Saccharum spontaneum HOM05M002623 ORTHO05M003875 0.0e+00 1552.3 1351 58.4
Dexi3B01G0002130 Digitaria exilis HOM05M002623 ORTHO05M003875 0.0e+00 1538.1 1392 56.8
GWHGAORA040534 Cenchrus purpureus HOM05M002623 ORTHO05M003875 0.0e+00 1519.2 1312 58.5
Dexi3A01G0002120 Digitaria exilis HOM05M002623 ORTHO05M003875 0.0e+00 1508.0 1364 57.0
Dexi8A01G0002170 Digitaria exilis HOM05M002623 ORTHO05M003875 0.0e+00 1496.9 1354 56.7
Dexi8B01G0002000 Digitaria exilis HOM05M002623 ORTHO05M003875 0.0e+00 1471.1 1294 58.1
Sspon.05G0020280-2B Saccharum spontaneum HOM05M002623 ORTHO05M003875 0.0e+00 1467.6 1352 56.2
Sspon.05G0020280-3D Saccharum spontaneum HOM05M002623 ORTHO05M003875 0.0e+00 1396.3 1283 56.9
EJB05_02171 Eragrostis curvula HOM05M002623 ORTHO05M003875 0.0e+00 1367.1 1338 54.1
EJB05_02148 Eragrostis curvula HOM05M002623 ORTHO05M003875 0.0e+00 1360.5 1338 54.0
CALSI_Maker00004851 Calamus simplicifolius HOM05M002623 ORTHO05M003875 0.0e+00 1350.1 1395 54.0
GWHGAORA042970 Cenchrus purpureus HOM05M002623 ORTHO05M003875 0.0e+00 1330.1 1356 52.7
AagrBONN_evm.TU.Sc2ySwM_117.694 Anthoceros agrestis HOM05M002623 ORTHO05M003875 0.0e+00 1320.1 1395 49.7
Mapoly0009s0155 Marchantia polymorpha HOM05M002623 ORTHO05M003875 0.0e+00 1318.5 1404 50.5
Pp3c1_28010 Physcomitrium patens HOM05M002623 ORTHO05M003875 0.0e+00 1294.6 1407 49.0
SMO228G0054 Selaginella moellendorffii HOM05M002623 ORTHO05M003875 0.0e+00 1262.3 1335 49.8
DDU477G0284 Dioscorea dumetorum HOM05M002623 ORTHO05M003875 0.0e+00 1186.4 961 63.5
CDE02G2423 Ceratophyllum demersum HOM05M002623 ORTHO05M003875 0.0e+00 1144.8 1053 57.3
Zjn_sc00028.1.g03040.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M002623 ORTHO05M003875 0.0e+00 1084.3 995 56.8
Os12g0134200 Oryza sativa ssp. japonica HOM05M002623 ORTHO05M003875 6.6e-295 1017.3 727 67.7
CALSI_Maker00004845 Calamus simplicifolius HOM05M002623 ORTHO05M003875 2.1e-293 1012.3 1309 47.1
SEGI_14316 Sequoiadendron giganteum HOM05M002623 ORTHO05M003875 6.6e-287 990.7 886 58.0
Os11g0137300 Oryza sativa ssp. japonica HOM05M002623 ORTHO05M003875 4.3e-286 988.0 829 59.8
Sspon.05G0030180-2C Saccharum spontaneum HOM05M002623 ORTHO05M003875 3.9e-279 964.9 708 65.7
CALSI_Maker00004850 Calamus simplicifolius HOM05M002623 ORTHO05M003875 9.4e-241 837.4 966 50.8
GWHGAORA040495 Cenchrus purpureus HOM05M002623 ORTHO05M003875 1.6e-240 836.6 1296 42.9
MCO04G062 Micromonas commoda HOM05M002623 ORTHO05M003875 7.4e-230 801.2 1427 35.8
CBR_g37490 Chara braunii HOM05M002623 ORTHO05M003875 4.8e-229 798.5 1287 36.6
Asa7G02338 Allium sativum HOM05M002623 ORTHO05M003875 6.7e-223 778.1 677 59.1
PRCOL_00001646 Prasinoderma coloniale HOM05M002623 ORTHO05M003875 1.2e-203 714.1 1408 33.7
Zm00007a00027823 Zea mays B104 HOM05M002623 ORTHO05M003875 5.4e-196 688.7 517 64.0
Sspon.05G0030180-1B Saccharum spontaneum HOM05M002623 ORTHO05M003875 5.0e-194 682.2 535 61.7
HPP92_022829 Vanilla planifolia HOM05M002623 ORTHO05M003875 4.6e-179 632.5 627 53.6
Asa7G02336 Allium sativum HOM05M002623 ORTHO05M003875 1.0e-170 604.7 525 58.1
GWHGAORA010658 Cenchrus purpureus HOM05M002623 ORTHO05M003875 6.6e-170 602.1 677 49.0
Cre04.g217935 Chlamydomonas reinhardtii HOM05M002623 ORTHO05M003875 3.7e-136 490.0 1614 26.4
Zm00007a00051305 Zea mays B104 HOM05M002623 ORTHO05M003875 2.5e-132 477.2 352 67.3
GWHGAZTO010339 Oryza alta HOM05M002623 ORTHO05M003875 6.7e-130 469.2 458 54.8
Os12g0148400 Oryza sativa ssp. japonica HOM05M002623 ORTHO05M003875 7.2e-108 396.0 387 52.5
GWHGAORA010659 Cenchrus purpureus HOM05M002623 ORTHO05M003875 1.3e-96 358.6 319 54.9
OsR498G1220940400.01 Oryza sativa ssp. indica HOM05M002623 ORTHO05M003875 2.7e-86 324.3 291 56.7
OsR498G1221259900.01 Oryza sativa ssp. indica HOM05M002623 ORTHO05M003875 4.5e-86 323.6 312 51.0
GWHGAZTO010341 Oryza alta HOM05M002623 ORTHO05M003875 3.8e-85 320.5 355 49.6
MisinT524700 Miscanthus sinensis HOM05M002623 ORTHO05M003875 7.5e-73 279.6 171 77.2
Zm00007a00048080 Zea mays B104 HOM05M002623 ORTHO05M003875 4.9e-72 276.9 285 49.8
SEGI_37322 Sequoiadendron giganteum HOM05M002623 ORTHO05M003875 6.4e-72 276.6 232 59.5
GWHGAZTO094449 Oryza alta HOM05M002623 ORTHO05M003875 9.2e-63 246.1 208 54.8
CDE02G1339 Ceratophyllum demersum HOM05M002623 ORTHO05M003875 5.1e-61 240.4 475 34.5
Misin19G048700 Miscanthus sinensis HOM05M002623 ORTHO05M014954 4.9e-56 223.8 163 68.1
DDU477G0048 Dioscorea dumetorum HOM05M002623 ORTHO05M003875 4.7e-51 207.2 206 51.5
GWHGAZTO010340 Oryza alta HOM05M002623 ORTHO05M003875 7.1e-47 193.4 110 79.1
DDU477G0237 Dioscorea dumetorum HOM05M002623 ORTHO05M003875 3.5e-46 191.0 174 56.9
HPP92_022831 Vanilla planifolia HOM05M002623 ORTHO05M003875 8.7e-45 186.4 165 55.2
MisinT524600 Miscanthus sinensis HOM05M002623 ORTHO05M003875 5.6e-44 183.7 129 71.3
CALSI_Maker00021185 Calamus simplicifolius HOM05M002623 ORTHO05M003875 4.3e-36 157.5 191 46.6
SEGI_00521 Sequoiadendron giganteum HOM05M002623 ORTHO05M003875 1.1e-31 142.9 258 36.4
SEGI_03367 Sequoiadendron giganteum HOM05M002623 ORTHO05M003875 5.3e-26 124.0 168 42.9
Sspon.05G0030190-1B Saccharum spontaneum HOM05M002623 ORTHO05M003875 1.3e-21 109.4 125 43.2
Cre04.g217942 Chlamydomonas reinhardtii HOM05M002623 ORTHO05M003875 9.7e-20 103.2 192 29.7
Asa7G02337 Allium sativum HOM05M002623 ORTHO05M003875 5.3e-18 97.4 54 83.3
Asa7G03698 Allium sativum HOM05M002623 ORTHO05M016544 1.2e-17 96.3 86 57.0
SEGI_21027 Sequoiadendron giganteum HOM05M002623 ORTHO05M003875 2.9e-16 91.7 77 54.5
PH02Gene41557 Phyllostachys edulis HOM05M002543 ORTHO05M005405 5.5e-15 87.4 127 38.6
SEGI_16541 Sequoiadendron giganteum HOM05M002623 ORTHO05M014710 2.1e-14 85.5 55 70.9
GWHGASIY002000 Secale cereale HOM05M002623 ORTHO05M014954 6.1e-14 84.0 102 45.1
GWHGASIY011213 Secale cereale HOM05M002623 ORTHO05M014954 3.0e-13 81.6 62 66.1
TraesCS5A03G0315200 Triticum aestivum HOM05M002623 ORTHO05M014954 3.9e-13 81.3 59 67.8
TRITD5Av1G081240 Triticum turgidum HOM05M002623 ORTHO05M014954 3.9e-13 81.3 59 67.8
GWHGASIY021238 Secale cereale HOM05M002623 ORTHO05M014954 1.9e-12 79.0 59 67.8
TraesCS7A03G1041800 Triticum aestivum HOM05M002623 ORTHO05M014954 4.3e-12 77.8 59 64.4
TRITD7Av1G231310 Triticum turgidum HOM05M002623 ORTHO05M014954 3.7e-11 74.7 59 61.0
PH02Gene41555 Phyllostachys edulis HOM05M002623 ORTHO05M003875 1.1e-10 73.2 89 43.8
SEGI_07125 Sequoiadendron giganteum HOM05M002623 ORTHO05M240953 3.8e-08 64.7 117 35.9
PH02Gene09885 Phyllostachys edulis HOM05M002623 ORTHO05M005405 8.5e-08 63.5 42 69.0
GWHGAZTO010342 Oryza alta HOM05M002623 ORTHO05M014710 2.5e-07 62.0 44 63.6
TRIDC2AG012990 Triticum dicoccoides HOM05M002623 ORTHO05M014954 7.9e-06 57.0 46 60.9


User provided reference genes

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