Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g045370.1 Solanum lycopersicum HOM05M004225 ORTHO05M003248 4.4e-172 607.1 299 100.0
Potri.016G064800 Populus trichocarpa HOM05M004225 ORTHO05M003248 3.4e-108 394.8 300 69.7
Glyma.03G205500 Glycine max HOM05M004225 ORTHO05M003248 7.6e-108 393.7 295 69.5
AT5G06580 Arabidopsis thaliana HOM05M004225 ORTHO05M003248 2.2e-102 375.6 298 67.4
MBI11_g39498_MAGBIO Magnolia biondii HOM05M004225 ORTHO05M003248 1.4e-101 372.9 297 65.3
ATR0697G015 Amborella trichopoda HOM05M004225 ORTHO05M003248 5.9e-100 367.5 298 64.8
Aco005152 Ananas comosus HOM05M004225 ORTHO05M003248 8.5e-99 363.6 323 60.4
Ma09_g26330 Musa acuminata HOM05M004225 ORTHO05M003248 3.1e-93 345.1 299 60.5
Asa3G01033 Allium sativum HOM05M004225 ORTHO05M003248 5.3e-93 344.4 251 66.1
DDU439G0029 Dioscorea dumetorum HOM05M004225 ORTHO05M003248 3.8e-91 338.2 324 56.5
DDU693G0696 Dioscorea dumetorum HOM05M004225 ORTHO05M003248 3.8e-91 338.2 324 56.5
Spipo2G0002900 Spirodela polyrhiza HOM05M004225 ORTHO05M003248 6.5e-91 337.4 245 68.2
CDE07G2068 Ceratophyllum demersum HOM05M004225 ORTHO05M003248 2.5e-90 335.5 236 69.5
HPP92_012150 Vanilla planifolia HOM05M004225 ORTHO05M003248 2.1e-89 332.4 303 60.1
Ma09_g10060 Musa acuminata HOM05M004225 ORTHO05M003248 1.8e-88 329.3 245 67.8
Sevir.2G045900 Setaria viridis HOM05M004225 ORTHO05M003248 3.0e-88 328.6 203 74.4
Misin03G007200 Miscanthus sinensis HOM05M004225 ORTHO05M003248 6.7e-88 327.4 203 74.9
Ot_Chr7_g09516 Oropetium thomaeum HOM05M004225 ORTHO05M003248 1.1e-87 326.6 242 67.4
OsKitaake07g042100 Oryza sativa Kitaake HOM05M004225 ORTHO05M003248 1.1e-87 326.6 203 73.9
Pahal.2G033800 Panicum hallii HOM05M004225 ORTHO05M003248 1.5e-87 326.2 203 74.4
Horvu_MOREX_2H01G474800 Hordeum vulgare HOM05M004225 ORTHO05M003248 2.0e-87 325.9 203 74.4
TraesCS6D03G0781400 Triticum aestivum HOM05M004225 ORTHO05M003248 4.4e-87 324.7 203 73.4
TraesCS6A03G0910600 Triticum aestivum HOM05M004225 ORTHO05M003248 2.2e-86 322.4 276 59.1
TRIDC2AG034100 Triticum dicoccoides HOM05M004225 ORTHO05M003248 2.2e-86 322.4 203 73.4
TRITD6Av1G209270 Triticum turgidum HOM05M004225 ORTHO05M003248 2.2e-86 322.4 276 59.1
GWHGAORA010152 Cenchrus purpureus HOM05M004225 ORTHO05M003248 2.8e-86 322.0 207 73.4
Seita.2G041800 Setaria italica HOM05M004225 ORTHO05M003248 2.8e-86 322.0 209 72.2
Bradi1g56880 Brachypodium distachyon HOM05M004225 ORTHO05M003248 4.8e-86 321.2 211 70.6
GWHGASIY008433 Secale cereale HOM05M004225 ORTHO05M003248 6.3e-86 320.9 238 66.8
V3.Lp_chr2_0G11660 Lolium perenne HOM05M004225 ORTHO05M003248 1.8e-85 319.3 211 68.7
TraesCS2B03G0676300 Triticum aestivum HOM05M004225 ORTHO05M003248 2.4e-85 318.9 203 72.4
TRIDC2BG037810 Triticum dicoccoides HOM05M004225 ORTHO05M003248 2.4e-85 318.9 203 72.4
AET2Gv20558300 Aegilops tauschii HOM05M004225 ORTHO05M003248 3.1e-85 318.5 203 72.9
TraesCS2D03G0573100 Triticum aestivum HOM05M004225 ORTHO05M003248 3.1e-85 318.5 203 72.9
TRIDC6AG053280 Triticum dicoccoides HOM05M004225 ORTHO05M003248 3.1e-85 318.5 276 59.8
PH02Gene22279 Phyllostachys edulis HOM05M004225 ORTHO05M003248 1.3e-83 313.2 270 58.9
Sobic.002G042400 Sorghum bicolor HOM05M004225 ORTHO05M003248 8.5e-83 310.5 320 53.4
TRIDC6BG062000 Triticum dicoccoides HOM05M004225 ORTHO05M003248 1.1e-82 310.1 204 71.1
Misin03G004500 Miscanthus sinensis HOM05M004225 ORTHO05M003248 6.1e-81 304.3 244 61.9
Zosma05g33100 Zostera marina HOM05M004225 ORTHO05M003248 1.8e-80 302.8 189 73.5
TRITD2Av1G131170 Triticum turgidum HOM05M004225 ORTHO05M003248 2.0e-79 299.3 203 69.5
OB07G13020 Oryza brachyantha HOM05M004225 ORTHO05M003248 1.3e-78 296.6 203 69.0
GWHGAORA046756 Cenchrus purpureus HOM05M004225 ORTHO05M003248 4.1e-77 291.6 203 69.0
Misin03G004300 Miscanthus sinensis HOM05M004225 ORTHO05M003248 1.6e-76 289.7 203 69.0
TRITD6Bv1G205710 Triticum turgidum HOM05M004225 ORTHO05M003248 1.6e-76 289.7 203 67.5
CALSI_Maker00031371 Calamus simplicifolius HOM05M004225 ORTHO05M003248 1.5e-74 283.1 174 77.6
AagrBONN_evm.TU.Sc2ySwM_228.4653 Anthoceros agrestis HOM05M004225 ORTHO05M003248 5.5e-74 281.2 190 69.5
Mapoly0056s0055 Marchantia polymorpha HOM05M004225 ORTHO05M003248 1.4e-72 276.6 303 51.2
OsR498G0713572400.01 Oryza sativa ssp. indica HOM05M004225 ORTHO05M003248 6.8e-72 274.2 169 72.8
Os07g0163000 Oryza sativa ssp. japonica HOM05M004225 ORTHO05M003248 6.8e-72 274.2 169 72.8
Dexi2B01G0003470 Digitaria exilis HOM05M004225 ORTHO05M003248 2.2e-70 269.2 232 59.1
TRITD2Bv1G117920 Triticum turgidum HOM05M004225 ORTHO05M003248 1.4e-69 266.5 170 70.6
Dexi2A01G0003620 Digitaria exilis HOM05M004225 ORTHO05M003248 7.0e-69 264.2 228 59.2
Pp3c24_4090 Physcomitrium patens HOM05M004225 ORTHO05M003248 3.5e-68 261.9 187 63.1
CBR_g48275 Chara braunii HOM05M004225 ORTHO05M003248 3.8e-67 258.5 190 65.3
evm.TU.AsparagusV1_01.3390.V1.1 Asparagus officinalis HOM05M004225 ORTHO05M003248 2.1e-65 252.7 248 54.0
Asa3G03678 Allium sativum HOM05M004225 ORTHO05M003248 1.4e-64 250.0 140 82.9
Pp3c20_18170 Physcomitrium patens HOM05M004225 ORTHO05M003248 1.8e-64 249.6 184 63.0
p5.00_sc00344_p0007 Elaeis guineensis HOM05M004225 ORTHO05M003248 3.4e-63 245.4 186 65.6
Sspon.02G0026610-2B Saccharum spontaneum HOM05M004225 ORTHO05M003248 3.4e-63 245.4 203 59.6
Sspon.02G0058480-1D Saccharum spontaneum HOM05M004225 ORTHO05M003248 9.8e-63 243.8 203 59.1
GWHGAZTO042157 Oryza alta HOM05M004225 ORTHO05M003248 5.9e-60 234.6 226 52.7
Sspon.02G0026610-1A Saccharum spontaneum HOM05M004225 ORTHO05M003248 2.3e-59 232.6 150 70.0
Sspon.02G0026610-3C Saccharum spontaneum HOM05M004225 ORTHO05M003248 8.6e-59 230.7 195 57.9
AET6Gv20874200 Aegilops tauschii HOM05M004225 ORTHO05M003248 2.5e-58 229.2 126 84.9
CALSI_Maker00004611 Calamus simplicifolius HOM05M004225 ORTHO05M003248 2.9e-54 215.7 141 76.6
Zm00007a00040800 Zea mays B104 HOM05M004225 ORTHO05M003248 8.3e-54 214.2 203 55.7
EJB05_15032 Eragrostis curvula HOM05M004225 ORTHO05M003248 2.4e-53 212.6 205 54.6
Zjn_sc00030.1.g03450.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M004225 ORTHO05M003248 2.0e-52 209.5 277 44.8
GWHGAZTO089842 Oryza alta HOM05M004225 ORTHO05M003248 2.7e-52 209.1 137 67.2
Cre10.g434900 Chlamydomonas reinhardtii HOM05M004225 ORTHO05M003248 2.0e-44 183.0 193 50.3
PH02Gene33349 Phyllostachys edulis HOM05M004225 ORTHO05M003248 1.2e-31 140.6 100 61.0
PRCOL_00003029 Prasinoderma coloniale HOM05M004225 ORTHO05M003248 9.2e-29 131.0 147 42.9
MCO11G780 Micromonas commoda HOM05M004225 ORTHO05M003248 1.2e-25 120.6 153 41.8
Glyma.19G202951 Glycine max HOM05M004225 ORTHO05M003248 7.8e-20 101.3 61 72.1
p5.00_sc00344_p0006 Elaeis guineensis HOM05M004225 ORTHO05M003248 1.7e-19 100.1 54 88.9
Potri.007G018600 Populus trichocarpa HOM05M005040 ORTHO05M006523 6.6e-19 98.2 212 29.2
p5.00_sc00027_p0032 Elaeis guineensis HOM05M005040 ORTHO05M006523 1.1e-18 97.4 193 31.1
evm.TU.AsparagusV1_03.1999.V1.1 Asparagus officinalis HOM05M005040 ORTHO05M006523 1.5e-18 97.1 184 31.0
Aco005264 Ananas comosus HOM05M005040 ORTHO05M006523 4.3e-18 95.5 184 31.0
Ma04_g18280 Musa acuminata HOM05M005040 ORTHO05M006523 7.3e-18 94.7 204 27.9
HPP92_017497 Vanilla planifolia HOM05M005040 ORTHO05M006523 2.8e-17 92.8 147 31.3
HPP92_017514 Vanilla planifolia HOM05M005040 ORTHO05M006523 2.8e-17 92.8 147 31.3
CDE07G0649 Ceratophyllum demersum HOM05M005040 ORTHO05M006523 3.6e-17 92.4 147 35.4
Asa1G00817 Allium sativum HOM05M005040 ORTHO05M006523 8.1e-17 91.3 178 28.1
CALSI_Maker00025367 Calamus simplicifolius HOM05M005040 ORTHO05M006523 1.1e-16 90.9 194 29.9
Glyma.01G169800 Glycine max HOM05M005040 ORTHO05M006523 1.1e-16 90.9 190 27.4
Pahal.2G056100 Panicum hallii HOM05M005040 ORTHO05M006523 1.1e-16 90.9 184 29.3
ATR0665G208 Amborella trichopoda HOM05M005040 ORTHO05M006523 2.4e-16 89.7 218 29.8
Spipo2G0050800 Spirodela polyrhiza HOM05M005040 ORTHO05M006523 2.4e-16 89.7 234 26.5
CBR_g3549 Chara braunii HOM05M005040 ORTHO05M006523 3.1e-16 89.4 147 35.4
Seita.2G062200 Setaria italica HOM05M005040 ORTHO05M006523 3.1e-16 89.4 147 33.3
Sevir.2G065400 Setaria viridis HOM05M005040 ORTHO05M006523 3.1e-16 89.4 147 33.3
GWHGAORA046913 Cenchrus purpureus HOM05M005040 ORTHO05M006523 4.0e-16 89.0 205 28.3
OB07G14180 Oryza brachyantha HOM05M005040 ORTHO05M006523 4.0e-16 89.0 147 32.7
OsKitaake07g057000 Oryza sativa Kitaake HOM05M005040 ORTHO05M006523 4.0e-16 89.0 184 29.9
OsR498G0713653700.01 Oryza sativa ssp. indica HOM05M005040 ORTHO05M006523 4.0e-16 89.0 184 29.9
Os07g0187200 Oryza sativa ssp. japonica HOM05M005040 ORTHO05M006523 4.0e-16 89.0 184 29.9
Zm00001eb302200 Zea mays B73 HOM05M005040 ORTHO05M006523 4.0e-16 89.0 147 32.0
Zm00007a00018841 Zea mays B104 HOM05M005040 ORTHO05M006523 4.0e-16 89.0 147 32.0
Zosma03g04780 Zostera marina HOM05M005040 ORTHO05M006523 5.3e-16 88.6 147 32.7
GWHGAORA046922 Cenchrus purpureus HOM05M005040 ORTHO05M006523 9.0e-16 87.8 185 29.7
Solyc02g062430.3 Solanum lycopersicum HOM05M005040 ORTHO05M006523 9.0e-16 87.8 180 30.0
GWHGAZTO042361 Oryza alta HOM05M005040 ORTHO05M006523 1.2e-15 87.4 147 32.7
Zjn_sc00030.1.g02140.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M005040 ORTHO05M006523 1.2e-15 87.4 147 31.3
Dexi2A01G0005400 Digitaria exilis HOM05M005040 ORTHO05M006523 1.5e-15 87.0 147 31.3
Misin03G052000 Miscanthus sinensis HOM05M005040 ORTHO05M006523 2.0e-15 86.7 147 30.6
Sspon.02G0023300-1A Saccharum spontaneum HOM05M005040 ORTHO05M006523 2.0e-15 86.7 143 31.5
SMO364G0024 Selaginella moellendorffii HOM05M005040 ORTHO05M006523 2.0e-15 86.7 185 28.1
Aco002195 Ananas comosus HOM05M004225 ORTHO05M003248 2.6e-15 86.3 46 89.1
Ot_Chr7_g23053 Oropetium thomaeum HOM05M005040 ORTHO05M006523 2.6e-15 86.3 147 32.7
Sspon.02G0023300-2B Saccharum spontaneum HOM05M005040 ORTHO05M006523 2.6e-15 86.3 147 30.6
Sspon.02G0023300-3C Saccharum spontaneum HOM05M005040 ORTHO05M006523 2.6e-15 86.3 147 30.6
Sspon.02G0023300-4D Saccharum spontaneum HOM05M005040 ORTHO05M006523 2.6e-15 86.3 147 30.6
SEGI_09254 Sequoiadendron giganteum HOM05M004225 ORTHO05M003248 2.6e-15 86.3 46 91.3
Sobic.002G058500 Sorghum bicolor HOM05M005040 ORTHO05M006523 2.6e-15 86.3 147 30.6
AT4G36400 Arabidopsis thaliana HOM05M005040 ORTHO05M006523 3.4e-15 85.9 184 27.2
Pp3c26_11820 Physcomitrium patens HOM05M005040 ORTHO05M006523 4.5e-15 85.5 185 29.2
PH02Gene32367 Phyllostachys edulis HOM05M005040 ORTHO05M006523 5.8e-15 85.1 147 29.9
Mapoly0113s0062 Marchantia polymorpha HOM05M005040 ORTHO05M006523 7.6e-15 84.7 147 32.0
Misin04G057700 Miscanthus sinensis HOM05M005040 ORTHO05M006523 7.6e-15 84.7 147 30.6
TraesCS2B03G1213100 Triticum aestivum HOM05M005040 ORTHO05M006523 7.6e-15 84.7 147 30.6
TRIDC2BG069790 Triticum dicoccoides HOM05M005040 ORTHO05M006523 7.6e-15 84.7 147 30.6
TRITD2Bv1G221460 Triticum turgidum HOM05M005040 ORTHO05M006523 7.6e-15 84.7 147 30.6
AagrBONN_evm.TU.Sc2ySwM_344.3428 Anthoceros agrestis HOM05M005040 ORTHO05M006523 1.3e-14 84.0 147 29.9
Bradi1g55030 Brachypodium distachyon HOM05M005040 ORTHO05M006523 1.3e-14 84.0 147 30.6
MBI04_g26283_MAGBIO Magnolia biondii HOM05M005040 ORTHO05M006523 1.3e-14 84.0 147 32.7
GWHGAZTO090022 Oryza alta HOM05M005040 ORTHO05M006523 1.7e-14 83.6 176 29.0
AET2Gv21011300 Aegilops tauschii HOM05M005040 ORTHO05M006523 2.2e-14 83.2 147 29.9
Horvu_MOREX_2H01G642800 Hordeum vulgare HOM05M005040 ORTHO05M006523 2.2e-14 83.2 147 29.9
V3.Lp_chr2_0G10836 Lolium perenne HOM05M005040 ORTHO05M006523 2.2e-14 83.2 147 29.9
TraesCS2D03G1023700 Triticum aestivum HOM05M005040 ORTHO05M006523 2.2e-14 83.2 147 29.9
TRIDC2AG065280 Triticum dicoccoides HOM05M005040 ORTHO05M006523 2.2e-14 83.2 147 29.9
TRITD2Av1G258890 Triticum turgidum HOM05M005040 ORTHO05M006523 2.2e-14 83.2 147 29.9
EJB05_15538 Eragrostis curvula HOM05M005040 ORTHO05M006523 1.9e-13 80.1 157 30.6
Cre08.g370550 Chlamydomonas reinhardtii HOM05M005040 ORTHO05M006523 9.3e-13 77.8 131 31.3
EJB05_15537 Eragrostis curvula HOM05M005040 ORTHO05M006523 1.2e-12 77.4 157 29.9
TraesCS2A03G1081100 Triticum aestivum HOM05M005040 ORTHO05M006523 5.1e-11 72.0 147 29.9
GWHGAZTO042156 Oryza alta HOM05M004225 ORTHO05M003248 2.5e-10 69.7 71 56.3
GWHGAORA009481 Cenchrus purpureus HOM05M005040 ORTHO05M006523 2.2e-06 56.6 183 24.6
Dexi2B01G0004890 Digitaria exilis HOM05M005040 ORTHO05M006523 2.2e-06 56.6 122 29.5
Ma04_g37580 Musa acuminata HOM05M000230 ORTHO05M000142 4.9e-06 55.5 148 29.1


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