Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g045360.1 Solanum lycopersicum HOM05M002171 ORTHO05M002407 2.4e-113 411.4 200 100.0
Solyc05g006780.3 Solanum lycopersicum HOM05M002171 ORTHO05M002407 9.8e-43 176.8 181 48.1
ATR0001G038 Amborella trichopoda HOM05M002171 ORTHO05M002407 1.7e-42 176.0 153 51.0
Asa7G03721 Allium sativum HOM05M002171 ORTHO05M002407 2.2e-42 175.6 152 52.6
Glyma.08G294800 Glycine max HOM05M002171 ORTHO05M002407 1.1e-41 173.3 149 51.0
MBI01_g01226_MAGBIO Magnolia biondii HOM05M002171 ORTHO05M002407 1.1e-41 173.3 188 45.7
CALSI_Maker00024741 Calamus simplicifolius HOM05M002171 ORTHO05M002407 2.4e-41 172.2 187 44.9
CALSI_Maker00044452 Calamus simplicifolius HOM05M002171 ORTHO05M002407 2.4e-41 172.2 187 44.9
Glyma.18G128200 Glycine max HOM05M002171 ORTHO05M002407 2.4e-41 172.2 149 50.3
Asa4G01981 Allium sativum HOM05M002171 ORTHO05M002407 4.1e-41 171.4 153 51.6
HPP92_019626 Vanilla planifolia HOM05M002171 ORTHO05M002407 4.1e-41 171.4 151 53.6
Potri.017G075900 Populus trichocarpa HOM05M002171 ORTHO05M002407 7.0e-41 170.6 151 53.0
Asa4G01969 Allium sativum HOM05M002171 ORTHO05M002407 9.2e-41 170.2 201 42.8
Glyma.02G024200 Glycine max HOM05M002171 ORTHO05M002407 9.2e-41 170.2 149 51.0
Potri.010G035100 Populus trichocarpa HOM05M002171 ORTHO05M002407 1.2e-40 169.9 186 45.7
Ma09_g10610 Musa acuminata HOM05M002171 ORTHO05M002407 1.6e-40 169.5 152 52.0
Potri.004G130200 Populus trichocarpa HOM05M002171 ORTHO05M002407 1.6e-40 169.5 151 52.3
Potri.008G193900 Populus trichocarpa HOM05M002171 ORTHO05M002407 1.6e-40 169.5 151 51.0
Asa2G00265 Allium sativum HOM05M002171 ORTHO05M002407 2.0e-40 169.1 155 48.4
Glyma.01G040400 Glycine max HOM05M002171 ORTHO05M002407 2.0e-40 169.1 149 51.0
CDE08G0266 Ceratophyllum demersum HOM05M002171 ORTHO05M002407 6.0e-40 167.5 162 49.4
Glyma.13G065800 Glycine max HOM05M002171 ORTHO05M002407 7.8e-40 167.2 152 52.6
p5.00_sc00136_p0026 Elaeis guineensis HOM05M002171 ORTHO05M002407 1.7e-39 166.0 153 49.7
HPP92_001828 Vanilla planifolia HOM05M002171 ORTHO05M002407 1.7e-39 166.0 151 50.3
AT1G59710 Arabidopsis thaliana HOM05M002171 ORTHO05M002407 6.6e-39 164.1 186 46.8
CDE06G1367 Ceratophyllum demersum HOM05M002171 ORTHO05M002407 8.6e-39 163.7 150 50.0
SEGI_33024 Sequoiadendron giganteum HOM05M002171 ORTHO05M002407 1.1e-38 163.3 149 51.0
Solyc05g006790.2 Solanum lycopersicum HOM05M002171 ORTHO05M002407 3.3e-38 161.8 203 43.3
AT1G27100 Arabidopsis thaliana HOM05M002171 ORTHO05M002407 4.3e-38 161.4 160 46.9
Solyc02g087580.3 Solanum lycopersicum HOM05M002171 ORTHO05M002407 4.3e-38 161.4 149 50.3
Aco019815 Ananas comosus HOM05M002171 ORTHO05M002407 7.3e-38 160.6 159 50.9
AT3G01311 Arabidopsis thaliana HOM05M002171 ORTHO05M002407 9.5e-38 160.2 171 49.7
Glyma.19G018900 Glycine max HOM05M002171 ORTHO05M002407 1.2e-37 159.8 152 51.3
GWHGAORA020069 Cenchrus purpureus HOM05M002171 ORTHO05M002407 1.6e-37 159.5 148 50.0
Dexi9A01G0004860 Digitaria exilis HOM05M002171 ORTHO05M002407 1.6e-37 159.5 148 50.7
Dexi9B01G0004630 Digitaria exilis HOM05M002171 ORTHO05M002407 1.6e-37 159.5 148 50.7
Ma08_g03150 Musa acuminata HOM05M002171 ORTHO05M002407 1.6e-37 159.5 176 44.9
Pahal.9G047400 Panicum hallii HOM05M002171 ORTHO05M002407 2.8e-37 158.7 148 50.7
Seita.9G050900 Setaria italica HOM05M002171 ORTHO05M002407 3.6e-37 158.3 148 50.7
Sevir.9G050100 Setaria viridis HOM05M002171 ORTHO05M002407 3.6e-37 158.3 148 50.7
HPP92_012249 Vanilla planifolia HOM05M002171 ORTHO05M002407 4.7e-37 157.9 153 48.4
DDU393G0002 Dioscorea dumetorum HOM05M002171 ORTHO05M002407 3.1e-36 155.2 152 49.3
DDU693G0148 Dioscorea dumetorum HOM05M002171 ORTHO05M002407 3.1e-36 155.2 152 49.3
EJB05_03994 Eragrostis curvula HOM05M002171 ORTHO05M002407 3.1e-36 155.2 149 50.3
OB03G44580 Oryza brachyantha HOM05M002171 ORTHO05M002407 3.1e-36 155.2 158 46.8
AT1G69900 Arabidopsis thaliana HOM05M002171 ORTHO05M002407 4.0e-36 154.8 152 48.0
PH02Gene27657 Phyllostachys edulis HOM05M002171 ORTHO05M002407 4.0e-36 154.8 151 49.0
Spipo9G0009700 Spirodela polyrhiza HOM05M002171 ORTHO05M002407 4.0e-36 154.8 157 48.4
MBI01_g01225_MAGBIO Magnolia biondii HOM05M002171 ORTHO05M002407 5.2e-36 154.5 150 48.7
OsKitaake03g378500 Oryza sativa Kitaake HOM05M002171 ORTHO05M002407 6.8e-36 154.1 150 48.7
OsR498G0307224100.01 Oryza sativa ssp. indica HOM05M002171 ORTHO05M002407 6.8e-36 154.1 150 48.7
Os03g0801900 Oryza sativa ssp. japonica HOM05M002171 ORTHO05M002407 6.8e-36 154.1 150 48.7
Glyma.09G241200 Glycine max HOM05M002171 ORTHO05M002407 1.5e-35 152.9 153 50.3
Solyc01g010430.4 Solanum lycopersicum HOM05M002171 ORTHO05M002407 1.5e-35 152.9 151 47.7
GWHGAZTO077044 Oryza alta HOM05M002171 ORTHO05M002407 2.6e-35 152.1 151 47.7
OsKitaake07g059600 Oryza sativa Kitaake HOM05M002171 ORTHO05M002407 2.6e-35 152.1 152 48.0
PH02Gene15762 Phyllostachys edulis HOM05M002171 ORTHO05M002407 2.6e-35 152.1 151 48.3
PH02Gene21958 Phyllostachys edulis HOM05M002171 ORTHO05M002407 3.4e-35 151.8 152 48.7
TraesCS5A03G1059400 Triticum aestivum HOM05M002171 ORTHO05M002407 5.8e-35 151.0 157 49.0
TRITD5Av1G222230 Triticum turgidum HOM05M002171 ORTHO05M002407 5.8e-35 151.0 157 49.0
Ot_Chr4_g27217 Oropetium thomaeum HOM05M002171 ORTHO05M002407 9.8e-35 150.2 149 48.3
Solyc01g010420.3 Solanum lycopersicum HOM05M002171 ORTHO05M002407 9.8e-35 150.2 156 47.4
AET5Gv21037400 Aegilops tauschii HOM05M002171 ORTHO05M002407 1.3e-34 149.8 157 48.4
GWHGAZTO027180 Oryza alta HOM05M002171 ORTHO05M002407 1.3e-34 149.8 151 47.7
TraesCS5D03G0998800 Triticum aestivum HOM05M002171 ORTHO05M002407 1.3e-34 149.8 157 48.4
CDE07G0972 Ceratophyllum demersum HOM05M002171 ORTHO05M002407 3.7e-34 148.3 149 46.3
Horvu_MOREX_5H01G635800 Hordeum vulgare HOM05M002171 ORTHO05M002407 3.7e-34 148.3 157 47.8
GWHGASIY029741 Secale cereale HOM05M002171 ORTHO05M002407 3.7e-34 148.3 157 47.8
GWHGASIY029745 Secale cereale HOM05M002171 ORTHO05M002407 3.7e-34 148.3 157 47.8
Zm00001eb212710 Zea mays B73 HOM05M002171 ORTHO05M002407 3.7e-34 148.3 164 46.3
Zm00007a00014439 Zea mays B104 HOM05M002171 ORTHO05M002407 3.7e-34 148.3 164 46.3
Zm00007a00034846 Zea mays B104 HOM05M002171 ORTHO05M002407 3.7e-34 148.3 150 48.0
ATR0322G048 Amborella trichopoda HOM05M002171 ORTHO05M002407 6.4e-34 147.5 149 49.7
AT1G69890 Arabidopsis thaliana HOM05M002171 ORTHO05M002407 6.4e-34 147.5 149 46.3
PH02Gene45354 Phyllostachys edulis HOM05M002171 ORTHO05M002407 6.4e-34 147.5 152 47.4
AagrBONN_evm.TU.Sc2ySwM_117.3190 Anthoceros agrestis HOM05M002171 ORTHO05M002407 8.3e-34 147.1 153 51.0
Misin01G045200 Miscanthus sinensis HOM05M002171 ORTHO05M002407 1.9e-33 146.0 152 48.7
GWHGAZTO090055 Oryza alta HOM05M002171 ORTHO05M002407 1.9e-33 146.0 152 46.1
Solyc02g067490.3 Solanum lycopersicum HOM05M002171 ORTHO05M002407 1.9e-33 146.0 162 46.3
Zm00001eb061210 Zea mays B73 HOM05M002171 ORTHO05M002407 3.2e-33 145.2 151 47.0
Bradi1g05100 Brachypodium distachyon HOM05M002171 ORTHO05M002407 4.1e-33 144.8 154 47.4
Sspon.01G0030390-3D Saccharum spontaneum HOM05M002171 ORTHO05M002407 7.1e-33 144.1 152 48.0
Zjn_sc00014.1.g07530.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M002171 ORTHO05M002407 7.1e-33 144.1 142 49.3
SEGI_04562 Sequoiadendron giganteum HOM05M002171 ORTHO05M002407 9.2e-33 143.7 150 46.7
Sspon.01G0030390-1A Saccharum spontaneum HOM05M002171 ORTHO05M002407 1.2e-32 143.3 152 48.0
Sspon.01G0030390-2B Saccharum spontaneum HOM05M002171 ORTHO05M002407 1.2e-32 143.3 152 48.0
Zosma04g24950 Zostera marina HOM05M002171 ORTHO05M002407 1.6e-32 142.9 191 41.4
Ma07_g12080 Musa acuminata HOM05M002171 ORTHO05M002407 2.1e-32 142.5 161 46.6
SEGI_31900 Sequoiadendron giganteum HOM05M002171 ORTHO05M002407 2.1e-32 142.5 151 47.7
Sobic.001G052300 Sorghum bicolor HOM05M002171 ORTHO05M002407 2.1e-32 142.5 151 47.7
CALSI_Maker00024718 Calamus simplicifolius HOM05M002171 ORTHO05M002407 3.5e-32 141.7 145 49.7
CALSI_Maker00044441 Calamus simplicifolius HOM05M002171 ORTHO05M002407 3.5e-32 141.7 145 49.7
V3.Lp_chr4_0G3528 Lolium perenne HOM05M002171 ORTHO05M002407 3.5e-32 141.7 159 47.2
p5.00_sc00027_p0104 Elaeis guineensis HOM05M002171 ORTHO05M002407 6.0e-32 141.0 153 44.4
Misin02G029300 Miscanthus sinensis HOM05M002171 ORTHO05M002407 7.8e-32 140.6 152 47.4
Zosma01g27030 Zostera marina HOM05M002171 ORTHO05M002407 7.8e-32 140.6 153 45.1
GWHGAORA046986 Cenchrus purpureus HOM05M002171 ORTHO05M002407 1.1e-30 136.7 152 45.4
AET3Gv20150200 Aegilops tauschii HOM05M002171 ORTHO05M002407 3.3e-30 135.2 148 45.3
AT3G28630 Arabidopsis thaliana HOM05M002171 ORTHO05M002407 3.3e-30 135.2 151 44.4
TraesCS3A03G0141900 Triticum aestivum HOM05M002171 ORTHO05M002407 3.3e-30 135.2 148 45.3
TraesCS3D03G0128900 Triticum aestivum HOM05M002171 ORTHO05M002407 3.3e-30 135.2 148 45.3
TRITD3Av1G018280 Triticum turgidum HOM05M002171 ORTHO05M002407 3.3e-30 135.2 148 45.3
Seita.2G069400 Setaria italica HOM05M002171 ORTHO05M002407 5.6e-30 134.4 153 45.1
Sevir.2G072200 Setaria viridis HOM05M002171 ORTHO05M002407 5.6e-30 134.4 153 45.1
Pahal.2G062300 Panicum hallii HOM05M002171 ORTHO05M002407 7.3e-30 134.0 155 44.5
TraesCS3B03G0182800 Triticum aestivum HOM05M002171 ORTHO05M002407 7.3e-30 134.0 148 44.6
TRIDC3BG010740 Triticum dicoccoides HOM05M002171 ORTHO05M002407 7.3e-30 134.0 148 44.6
Horvu_MOREX_3H01G071200 Hordeum vulgare HOM05M002171 ORTHO05M002407 9.5e-30 133.7 161 44.7
Sobic.002G066300 Sorghum bicolor HOM05M002171 ORTHO05M002407 9.5e-30 133.7 159 42.8
Ot_Chr7_g23100 Oropetium thomaeum HOM05M002171 ORTHO05M002407 1.2e-29 133.3 156 44.2
Ot_Un66_gn41078 Oropetium thomaeum HOM05M002171 ORTHO05M002407 1.2e-29 133.3 156 44.2
Zjn_sc00051.1.g00700.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M002171 ORTHO05M002407 2.1e-29 132.5 160 43.1
Zjn_sc00461.1.g00020.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M002171 ORTHO05M002407 2.1e-29 132.5 160 43.1
Bradi1g54812 Brachypodium distachyon HOM05M002171 ORTHO05M002407 2.8e-29 132.1 157 44.6
Sspon.02G0022960-1A Saccharum spontaneum HOM05M002171 ORTHO05M002407 2.8e-29 132.1 159 42.8
TRITD3Bv1G021860 Triticum turgidum HOM05M002171 ORTHO05M002407 2.8e-29 132.1 148 44.6
GWHGAORA009374 Cenchrus purpureus HOM05M002171 ORTHO05M002407 3.6e-29 131.7 159 42.8
Sspon.02G0022960-2C Saccharum spontaneum HOM05M002171 ORTHO05M002407 3.6e-29 131.7 159 42.8
GWHGASIY013380 Secale cereale HOM05M002171 ORTHO05M002407 6.2e-29 131.0 148 43.9
Zm00001eb302460 Zea mays B73 HOM05M002171 ORTHO05M002407 1.8e-28 129.4 159 42.1
Zm00007a00002216 Zea mays B104 HOM05M002171 ORTHO05M002407 1.8e-28 129.4 159 42.1
Misin04G065800 Miscanthus sinensis HOM05M002171 ORTHO05M002407 8.9e-28 127.1 159 41.5
Dexi2A01G0006040 Digitaria exilis HOM05M002171 ORTHO05M002407 4.4e-27 124.8 168 39.3
Dexi2B01G0005510 Digitaria exilis HOM05M002171 ORTHO05M002407 7.6e-27 124.0 170 38.8
Pp3c2_25690 Physcomitrium patens HOM05M002171 ORTHO05M002407 9.9e-27 123.6 150 46.0
CALSI_Maker00015181 Calamus simplicifolius HOM05M002171 ORTHO05M002407 3.8e-26 121.7 154 41.6
TRITD5Bv1G219910 Triticum turgidum HOM05M002171 ORTHO05M002407 1.4e-25 119.8 140 45.7
Solyc02g067510.3 Solanum lycopersicum HOM05M002171 ORTHO05M002407 2.4e-25 119.0 151 36.4
SMO134G0040 Selaginella moellendorffii HOM05M002171 ORTHO05M002407 1.6e-24 116.3 171 40.9
Mapoly0008s0210 Marchantia polymorpha HOM05M002171 ORTHO05M002407 2.7e-24 115.5 150 44.7
Spipo24G0017800 Spirodela polyrhiza HOM05M002171 ORTHO05M002407 2.7e-24 115.5 150 42.0
V3.Lp_chr4_0G3530 Lolium perenne HOM05M002171 ORTHO05M002407 6.6e-23 110.9 148 39.2
GWHGASIY043185 Secale cereale HOM05M002171 ORTHO05M002407 8.6e-23 110.5 148 39.9
V3.Lp_chr2_0G10674 Lolium perenne HOM05M002171 ORTHO05M002407 1.1e-22 110.2 122 45.9
Spipo2G0060100 Spirodela polyrhiza HOM05M002171 ORTHO05M002407 1.1e-22 110.2 165 38.8
SMO246G0018 Selaginella moellendorffii HOM05M002171 ORTHO05M002407 5.6e-22 107.8 162 38.3
Zm00001eb034470 Zea mays B73 HOM05M002171 ORTHO05M002407 7.3e-22 107.5 162 37.7
SMO367G0441 Selaginella moellendorffii HOM05M002171 ORTHO05M002407 4.0e-20 101.7 147 44.2
Zm00001eb371650 Zea mays B73 HOM05M002171 ORTHO05M002407 4.0e-20 101.7 124 45.2
Pp3c7_10860 Physcomitrium patens HOM05M002171 ORTHO05M002407 2.0e-19 99.4 148 41.9
Pp3c11_14600 Physcomitrium patens HOM05M002171 ORTHO05M002407 1.3e-18 96.7 160 35.0
Zm00007a00020291 Zea mays B104 HOM05M002171 ORTHO05M002407 4.2e-17 91.7 115 43.5
CDE06G0165 Ceratophyllum demersum HOM05M002171 ORTHO05M002407 1.3e-13 80.1 75 44.0
Zm00001eb241360 Zea mays B73 HOM05M002171 ORTHO05M002407 2.4e-12 75.9 82 47.6
Zm00001eb100370 Zea mays B73 HOM05M002171 ORTHO05M002407 2.0e-11 72.8 82 46.3
Zm00007a00026002 Zea mays B104 HOM05M002171 ORTHO05M002407 2.0e-11 72.8 79 46.8
Horvu_MOREX_7H01G123700 Hordeum vulgare HOM05M000460 ORTHO05M000594 3.4e-11 72.0 131 33.6
AET7Gv20287200 Aegilops tauschii HOM05M000460 ORTHO05M000594 5.8e-11 71.2 131 34.4
TraesCS7D03G0247600 Triticum aestivum HOM05M000460 ORTHO05M000594 5.8e-11 71.2 131 34.4
Zm00007a00007044 Zea mays B104 HOM05M002171 ORTHO05M002407 7.6e-11 70.9 82 45.1
evm.TU.AsparagusV1_07.3737.V1.1 Asparagus officinalis HOM05M002171 ORTHO05M002407 1.7e-10 69.7 109 37.6
TraesCS7B03G0029400 Triticum aestivum HOM05M000460 ORTHO05M000594 3.8e-10 68.6 132 34.1
Zjn_sc00016.1.g05840.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M000460 ORTHO05M009946 1.1e-09 67.0 163 34.4
Bradi2g37435 Brachypodium distachyon HOM05M000460 ORTHO05M009946 2.4e-09 65.9 176 30.7
Ma04_g18050 Musa acuminata HOM05M002171 ORTHO05M148819 6.0e-08 61.2 156 28.8
Ma04_g18040 Musa acuminata HOM05M002171 ORTHO05M149496 2.3e-07 59.3 152 26.3
TraesCS1A03G0804000 Triticum aestivum HOM05M008564 ORTHO05M010846 3.9e-07 58.5 193 29.0
TraesCS1A03G0804800 Triticum aestivum HOM05M008564 ORTHO05M010846 3.9e-07 58.5 193 29.0
TraesCS1A03G0805500 Triticum aestivum HOM05M008564 ORTHO05M010846 3.9e-07 58.5 193 29.0
Sspon.01G0046580-1B Saccharum spontaneum HOM05M000460 ORTHO05M011497 8.7e-07 57.4 150 28.7
TraesCS7B03G0050700 Triticum aestivum HOM05M000460 ORTHO05M000594 1.1e-06 57.0 122 33.6
TRITD7Bv1G006400 Triticum turgidum HOM05M000460 ORTHO05M000594 1.1e-06 57.0 122 33.6
PH02Gene42592 Phyllostachys edulis HOM05M008564 ORTHO05M010846 1.5e-06 56.6 137 30.7
Misin01G100400 Miscanthus sinensis HOM05M000460 ORTHO05M011497 2.5e-06 55.8 150 28.0
Sobic.001G110100 Sorghum bicolor HOM05M000460 ORTHO05M011497 2.5e-06 55.8 150 27.3


User provided reference genes

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