Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g045334.1 Solanum lycopersicum HOM05M000861 ORTHO05M020219 5.5e-76 287.0 162 100.0
Solyc11g045320.1 Solanum lycopersicum HOM05M000861 ORTHO05M020219 1.1e-60 236.1 131 92.4
Solyc11g045332.1 Solanum lycopersicum HOM05M000861 ORTHO05M020219 3.6e-19 98.2 51 100.0
Solyc02g087360.4 Solanum lycopersicum HOM05M000861 ORTHO05M002489 3.4e-17 91.7 171 37.4
Glyma.02G026700 Glycine max HOM05M000861 ORTHO05M002489 1.2e-14 83.2 89 52.8
Solyc02g067570.3 Solanum lycopersicum HOM05M000861 ORTHO05M002489 3.5e-14 81.6 162 38.3
Glyma.01G038300 Glycine max HOM05M000861 ORTHO05M002489 4.6e-14 81.3 89 51.7
AT1G70060 Arabidopsis thaliana HOM05M000861 ORTHO05M002489 1.3e-13 79.7 94 47.9
Ot_Chr3_g06896 Oropetium thomaeum HOM05M000861 ORTHO05M002489 3.9e-13 78.2 69 56.5
AET3Gv20007600 Aegilops tauschii HOM05M000861 ORTHO05M002489 8.6e-13 77.0 71 53.5
Asa8G05658 Allium sativum HOM05M000861 ORTHO05M002489 8.6e-13 77.0 69 59.4
PH02Gene13290 Phyllostachys edulis HOM05M000861 ORTHO05M002489 8.6e-13 77.0 69 55.1
PH02Gene19656 Phyllostachys edulis HOM05M000861 ORTHO05M002489 8.6e-13 77.0 69 55.1
TraesCS3B03G0011800 Triticum aestivum HOM05M000861 ORTHO05M002489 8.6e-13 77.0 71 53.5
TraesCS3D03G0005400 Triticum aestivum HOM05M000861 ORTHO05M002489 8.6e-13 77.0 71 53.5
TRIDC3AG002940 Triticum dicoccoides HOM05M000861 ORTHO05M002489 8.6e-13 77.0 71 53.5
TRIDC3BG000770 Triticum dicoccoides HOM05M000861 ORTHO05M002489 8.6e-13 77.0 71 53.5
TRITD3Bv1G000950 Triticum turgidum HOM05M000861 ORTHO05M002489 8.6e-13 77.0 71 53.5
Aco012721 Ananas comosus HOM05M000861 ORTHO05M002489 1.1e-12 76.6 69 58.0
Horvu_MOREX_3H01G005400 Hordeum vulgare HOM05M000861 ORTHO05M002489 1.1e-12 76.6 71 53.5
GWHGASIY012622 Secale cereale HOM05M000861 ORTHO05M002489 1.1e-12 76.6 71 53.5
GWHGASIY012635 Secale cereale HOM05M000861 ORTHO05M002489 1.1e-12 76.6 71 53.5
Potri.008G192200 Populus trichocarpa HOM05M000861 ORTHO05M002489 1.5e-12 76.3 69 60.9
Glyma.19G016300 Glycine max HOM05M000861 ORTHO05M002489 1.9e-12 75.9 69 58.0
PH02Gene46970 Phyllostachys edulis HOM05M000861 ORTHO05M002489 1.9e-12 75.9 70 57.1
p5.00_sc00036_p0145 Elaeis guineensis HOM05M000861 ORTHO05M002489 2.5e-12 75.5 72 52.8
EJB05_31937 Eragrostis curvula HOM05M000861 ORTHO05M002489 2.5e-12 75.5 69 55.1
EJB05_31942 Eragrostis curvula HOM05M000861 ORTHO05M002489 2.5e-12 75.5 69 55.1
V3.Lp_chr3_0G3404 Lolium perenne HOM05M000861 ORTHO05M002489 2.5e-12 75.5 71 54.9
AT3G01320 Arabidopsis thaliana HOM05M000861 ORTHO05M002489 4.3e-12 74.7 65 58.5
Ma01_g14020 Musa acuminata HOM05M000861 ORTHO05M002489 4.3e-12 74.7 69 56.5
Ma09_g00770 Musa acuminata HOM05M000861 ORTHO05M002489 5.6e-12 74.3 69 56.5
Zjn_sc00005.1.g08020.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M000861 ORTHO05M002489 5.6e-12 74.3 69 53.6
Glyma.13G067800 Glycine max HOM05M000861 ORTHO05M002489 7.3e-12 73.9 69 56.5
GWHGAZTO041558 Oryza alta HOM05M000861 ORTHO05M002489 7.3e-12 73.9 69 53.6
GWHGAZTO052966 Oryza alta HOM05M000861 ORTHO05M002489 7.3e-12 73.9 69 53.6
OB01G10590 Oryza brachyantha HOM05M000861 ORTHO05M002489 7.3e-12 73.9 69 53.6
OsKitaake01g115200 Oryza sativa Kitaake HOM05M000861 ORTHO05M002489 7.3e-12 73.9 69 53.6
OsR498G0100031800.01 Oryza sativa ssp. indica HOM05M000861 ORTHO05M002489 7.3e-12 73.9 69 53.6
Os01g0109700 Oryza sativa ssp. japonica HOM05M000861 ORTHO05M002489 7.3e-12 73.9 69 53.6
Asa7G01611 Allium sativum HOM05M000861 ORTHO05M002489 9.5e-12 73.6 75 52.0
Bradi2g00860 Brachypodium distachyon HOM05M000861 ORTHO05M002489 1.2e-11 73.2 71 52.1
CALSI_Maker00037041 Calamus simplicifolius HOM05M000861 ORTHO05M002489 1.2e-11 73.2 72 51.4
CALSI_Maker00037046 Calamus simplicifolius HOM05M000861 ORTHO05M002489 1.2e-11 73.2 72 51.4
PH02Gene28080 Phyllostachys edulis HOM05M000861 ORTHO05M002489 1.2e-11 73.2 70 55.7
PH02Gene49671 Phyllostachys edulis HOM05M000861 ORTHO05M002489 1.2e-11 73.2 70 55.7
Potri.010G038700 Populus trichocarpa HOM05M000861 ORTHO05M002489 1.2e-11 73.2 69 59.4
Spipo19G0020100 Spirodela polyrhiza HOM05M000861 ORTHO05M002489 1.2e-11 73.2 65 58.5
Zosma01g06880 Zostera marina HOM05M000861 ORTHO05M002489 1.2e-11 73.2 69 55.1
Aco016427 Ananas comosus HOM05M000861 ORTHO05M002489 1.6e-11 72.8 72 52.8
Dexi3A01G0014270 Digitaria exilis HOM05M000861 ORTHO05M002489 1.6e-11 72.8 112 41.1
Dexi3B01G0014470 Digitaria exilis HOM05M000861 ORTHO05M002489 1.6e-11 72.8 112 41.1
DDU027G0144 Dioscorea dumetorum HOM05M000861 ORTHO05M002489 1.6e-11 72.8 69 55.1
DDU841G0012 Dioscorea dumetorum HOM05M000861 ORTHO05M002489 1.6e-11 72.8 69 55.1
HPP92_003790 Vanilla planifolia HOM05M000861 ORTHO05M002489 1.6e-11 72.8 88 46.6
Solyc02g087373.1 Solanum lycopersicum HOM05M000861 ORTHO05M002887 2.1e-11 72.4 78 50.0
Solyc02g087377.1 Solanum lycopersicum HOM05M000861 ORTHO05M002887 2.1e-11 72.4 78 50.0
AT5G15020 Arabidopsis thaliana HOM05M000861 ORTHO05M002489 2.8e-11 72.0 78 50.0
Zm00007a00002644 Zea mays B104 HOM05M000861 ORTHO05M002489 2.8e-11 72.0 70 54.3
AET1Gv20002000 Aegilops tauschii HOM05M000861 ORTHO05M002489 3.6e-11 71.6 76 50.0
OsKitaake05g000500 Oryza sativa Kitaake HOM05M000861 ORTHO05M002489 3.6e-11 71.6 70 55.7
OsR498G0509555200.01 Oryza sativa ssp. indica HOM05M000861 ORTHO05M002489 3.6e-11 71.6 70 55.7
Os05g0100500 Oryza sativa ssp. japonica HOM05M000861 ORTHO05M002489 3.6e-11 71.6 70 55.7
Solyc02g087390.3 Solanum lycopersicum HOM05M000861 ORTHO05M002887 3.6e-11 71.6 78 50.0
TraesCS1A03G0005600 Triticum aestivum HOM05M000861 ORTHO05M002489 3.6e-11 71.6 79 49.4
TraesCS1D03G0001800 Triticum aestivum HOM05M000861 ORTHO05M002489 3.6e-11 71.6 76 50.0
TRITD1Av1G000450 Triticum turgidum HOM05M000861 ORTHO05M002489 3.6e-11 71.6 79 49.4
Zjn_sc00043.1.g00820.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M000861 ORTHO05M002489 3.6e-11 71.6 69 52.2
evm.TU.AsparagusV1_01.2813.V1.1 Asparagus officinalis HOM05M000861 ORTHO05M002489 4.7e-11 71.2 69 53.6
Potri.001G350200 Populus trichocarpa HOM05M000861 ORTHO05M002489 4.7e-11 71.2 177 30.5
Solyc02g087365.1 Solanum lycopersicum HOM05M000861 ORTHO05M002887 4.7e-11 71.2 78 48.7
Zosma06g07280 Zostera marina HOM05M000861 ORTHO05M002489 4.7e-11 71.2 70 50.0
MBI15_g23242_MAGBIO Magnolia biondii HOM05M000861 ORTHO05M002489 6.2e-11 70.9 69 53.6
Mapoly0007s0276 Marchantia polymorpha HOM05M000861 ORTHO05M002489 6.2e-11 70.9 69 53.6
p5.00_sc00063_p0070 Elaeis guineensis HOM05M000861 ORTHO05M002489 8.0e-11 70.5 72 50.0
Zm00001eb135780 Zea mays B73 HOM05M000861 ORTHO05M022890 8.0e-11 70.5 65 55.4
Zm00001eb135790 Zea mays B73 HOM05M000861 ORTHO05M022890 8.0e-11 70.5 65 55.4
Zm00007a00048377 Zea mays B104 HOM05M000861 ORTHO05M002887 8.0e-11 70.5 65 55.4
Zm00007a00051185 Zea mays B104 HOM05M000861 ORTHO05M002887 8.0e-11 70.5 65 55.4
Zm00001eb334400 Zea mays B73 HOM05M000861 ORTHO05M002489 1.0e-10 70.1 70 54.3
Zm00007a00042633 Zea mays B104 HOM05M000861 ORTHO05M002489 1.0e-10 70.1 70 54.3
SMO115G0316 Selaginella moellendorffii HOM05M000861 ORTHO05M002489 1.4e-10 69.7 98 42.9
DDU613G0762 Dioscorea dumetorum HOM05M000861 ORTHO05M002887 1.8e-10 69.3 69 55.1
Mapoly0629s0001 Marchantia polymorpha HOM05M000861 ORTHO05M002489 1.8e-10 69.3 69 52.2
TraesCS1B03G0003800 Triticum aestivum HOM05M000861 ORTHO05M002489 1.8e-10 69.3 80 48.8
ATR1101G039 Amborella trichopoda HOM05M000861 ORTHO05M002489 2.3e-10 68.9 96 41.7
TRIDC1BG000380 Triticum dicoccoides HOM05M000861 ORTHO05M002489 3.1e-10 68.6 76 48.7
TRITD1Bv1G000730 Triticum turgidum HOM05M000861 ORTHO05M002489 3.1e-10 68.6 76 48.7
Zm00001eb126360 Zea mays B73 HOM05M000861 ORTHO05M002489 3.1e-10 68.6 67 52.2
Zosma03g11380 Zostera marina HOM05M000861 ORTHO05M002887 3.1e-10 68.6 70 48.6
AagrBONN_evm.TU.Sc2ySwM_362.209 Anthoceros agrestis HOM05M000861 ORTHO05M002489 4.0e-10 68.2 71 50.7
CDE06G1214 Ceratophyllum demersum HOM05M000861 ORTHO05M002489 4.0e-10 68.2 69 52.2
Horvu_MOREX_1H01G002600 Hordeum vulgare HOM05M000861 ORTHO05M002489 4.0e-10 68.2 80 47.5
SMO119G0353 Selaginella moellendorffii HOM05M000861 ORTHO05M002489 4.0e-10 68.2 104 42.3
Asa8G03700 Allium sativum HOM05M000861 ORTHO05M002489 5.2e-10 67.8 86 46.5
Bradi2g40052 Brachypodium distachyon HOM05M000861 ORTHO05M002489 5.2e-10 67.8 69 52.2
Pahal.3G150100 Panicum hallii HOM05M000861 ORTHO05M002489 5.2e-10 67.8 88 46.6
Pp3c8_17710 Physcomitrium patens HOM05M000861 ORTHO05M002489 5.2e-10 67.8 69 52.2
Sspon.03G0018690-1A Saccharum spontaneum HOM05M000861 ORTHO05M002489 5.2e-10 67.8 70 51.4
Sspon.03G0018690-1P Saccharum spontaneum HOM05M000861 ORTHO05M002489 5.2e-10 67.8 70 51.4
Sspon.03G0018690-2B Saccharum spontaneum HOM05M000861 ORTHO05M002489 5.2e-10 67.8 70 51.4
Sspon.03G0018690-3C Saccharum spontaneum HOM05M000861 ORTHO05M002887 5.2e-10 67.8 70 51.4
Sspon.03G0046810-1D Saccharum spontaneum HOM05M000861 ORTHO05M002489 5.2e-10 67.8 70 51.4
Solyc05g006540.3 Solanum lycopersicum HOM05M000861 ORTHO05M002489 5.2e-10 67.8 65 55.4
Sobic.003G101400 Sorghum bicolor HOM05M000861 ORTHO05M002489 5.2e-10 67.8 70 51.4
Sobic.009G000100 Sorghum bicolor HOM05M000861 ORTHO05M002489 6.8e-10 67.4 86 44.2
SEGI_13294 Sequoiadendron giganteum HOM05M000861 ORTHO05M002489 8.9e-10 67.0 89 43.8
TRIDC1AG000090 Triticum dicoccoides HOM05M000861 ORTHO05M002887 8.9e-10 67.0 79 46.8
Ma02_g11400 Musa acuminata HOM05M000861 ORTHO05M002489 1.2e-09 66.6 138 35.5
Pahal.5G444600 Panicum hallii HOM05M000861 ORTHO05M002489 1.2e-09 66.6 70 51.4
Seita.3G117100 Setaria italica HOM05M000861 ORTHO05M002489 1.2e-09 66.6 88 45.5
Sevir.3G119400 Setaria viridis HOM05M000861 ORTHO05M002489 1.2e-09 66.6 88 45.5
HPP92_004858 Vanilla planifolia HOM05M000861 ORTHO05M002489 1.2e-09 66.6 80 42.5
AT1G24190 Arabidopsis thaliana HOM05M000861 ORTHO05M002489 1.5e-09 66.2 98 43.9
Dexi5A01G0009770 Digitaria exilis HOM05M000861 ORTHO05M002489 1.5e-09 66.2 70 52.9
Dexi5B01G0010090 Digitaria exilis HOM05M000861 ORTHO05M002489 1.5e-09 66.2 70 52.9
V3.Lp_chr7_0.1G3874 Lolium perenne HOM05M000861 ORTHO05M002489 1.5e-09 66.2 70 50.0
Ma11_g12100 Musa acuminata HOM05M000861 ORTHO05M002489 1.5e-09 66.2 69 50.7
Zm00001eb267730 Zea mays B73 HOM05M000861 ORTHO05M002489 1.5e-09 66.2 65 52.3
Zm00007a00042334 Zea mays B104 HOM05M000861 ORTHO05M002489 1.5e-09 66.2 65 52.3
AT1G10450 Arabidopsis thaliana HOM05M000861 ORTHO05M002489 2.0e-09 65.9 116 39.7
CALSI_Maker00044905 Calamus simplicifolius HOM05M000861 ORTHO05M002489 2.0e-09 65.9 72 50.0
PH02Gene49959 Phyllostachys edulis HOM05M000861 ORTHO05M002887 2.0e-09 65.9 71 50.7
Solyc07g041320.3 Solanum lycopersicum HOM05M000861 ORTHO05M002887 2.0e-09 65.9 88 44.3
Zosma03g03630 Zostera marina HOM05M000861 ORTHO05M002489 2.0e-09 65.9 73 49.3
GWHGAORA039098 Cenchrus purpureus HOM05M000861 ORTHO05M002489 2.6e-09 65.5 88 45.5
Pp3c24_19330 Physcomitrium patens HOM05M000861 ORTHO05M002489 2.6e-09 65.5 69 52.2
GWHGAORA033282 Cenchrus purpureus HOM05M000861 ORTHO05M002489 3.4e-09 65.1 70 51.4
GWHGAORA041702 Cenchrus purpureus HOM05M000861 ORTHO05M002489 3.4e-09 65.1 70 51.4
CDE04G0561 Ceratophyllum demersum HOM05M000861 ORTHO05M002887 3.4e-09 65.1 110 39.1
Misin17G000100 Miscanthus sinensis HOM05M000861 ORTHO05M002489 3.4e-09 65.1 86 41.9
Pp3c24_13770 Physcomitrium patens HOM05M000861 ORTHO05M002489 3.4e-09 65.1 96 41.7
Seita.5G073400 Setaria italica HOM05M000861 ORTHO05M002489 3.4e-09 65.1 70 51.4
Sevir.5G072200 Setaria viridis HOM05M000861 ORTHO05M002489 3.4e-09 65.1 70 51.4
CALSI_Maker00037049 Calamus simplicifolius HOM05M000861 ORTHO05M002489 4.4e-09 64.7 72 48.6
Pp3c8_14940 Physcomitrium patens HOM05M000861 ORTHO05M002489 4.4e-09 64.7 65 53.8
Glyma.18G130400 Glycine max HOM05M000861 ORTHO05M002489 5.8e-09 64.3 91 45.1
GWHGAORA004129 Cenchrus purpureus HOM05M000861 ORTHO05M002489 7.5e-09 63.9 88 44.3
Glyma.08G292900 Glycine max HOM05M000861 ORTHO05M002489 7.5e-09 63.9 108 40.7
V3.Lp_chr1_0G48 Lolium perenne HOM05M000861 ORTHO05M002489 9.8e-09 63.5 76 46.1
Solyc10g048000.3 Solanum lycopersicum HOM05M000861 ORTHO05M002887 9.8e-09 63.5 78 42.3
Cre03.g180800 Chlamydomonas reinhardtii HOM05M000861 ORTHO05M002489 2.2e-08 62.4 65 50.8
Pp3c8_19010 Physcomitrium patens HOM05M000861 ORTHO05M002489 2.2e-08 62.4 97 41.2
Sspon.07G0016470-1A Saccharum spontaneum HOM05M000861 ORTHO05M002887 4.9e-08 61.2 77 42.9
GWHGASIY000232 Secale cereale HOM05M000861 ORTHO05M002489 6.4e-08 60.8 91 44.0
MCO01G398 Micromonas commoda HOM05M000861 ORTHO05M002489 1.4e-07 59.7 70 48.6
MCO01G416 Micromonas commoda HOM05M000861 ORTHO05M002489 1.4e-07 59.7 70 48.6
AT1G59890 Arabidopsis thaliana HOM05M000861 ORTHO05M002489 1.9e-07 59.3 126 32.5
AT1G70030 Arabidopsis thaliana HOM05M000861 ORTHO05M002887 1.9e-07 59.3 71 43.7
CALSI_Maker00037051 Calamus simplicifolius HOM05M000861 ORTHO05M002489 5.4e-07 57.8 70 44.3
PRCOL_00003383 Prasinoderma coloniale HOM05M000861 ORTHO05M002489 7.0e-07 57.4 83 43.4


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