Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g045330.2 Solanum lycopersicum HOM05M002477 ORTHO05M002749 1.9e-270 934.5 470 100.0
Potri.017G018000 Populus trichocarpa HOM05M002477 ORTHO05M002749 1.7e-178 629.0 465 67.5
Glyma.12G009500 Glycine max HOM05M002477 ORTHO05M002749 1.9e-174 615.5 478 66.5
Potri.007G133800 Populus trichocarpa HOM05M002477 ORTHO05M002749 8.2e-173 610.1 471 65.2
Glyma.09G227300 Glycine max HOM05M002477 ORTHO05M002749 2.4e-172 608.6 468 66.7
p5.00_sc00506_p0003 Elaeis guineensis HOM05M002477 ORTHO05M002749 5.9e-171 604.0 441 67.3
Solyc08g013880.4 Solanum lycopersicum HOM05M002477 ORTHO05M002749 5.9e-171 604.0 378 80.7
evm.TU.AsparagusV1_02.485.V1.1 Asparagus officinalis HOM05M002477 ORTHO05M002749 1.6e-168 595.9 459 64.9
p5.00_sc00006_p0127 Elaeis guineensis HOM05M002477 ORTHO05M002749 1.6e-168 595.9 463 64.4
MBI11_g23944_MAGBIO Magnolia biondii HOM05M002477 ORTHO05M002749 1.1e-164 583.2 434 66.4
CALSI_Maker00013639 Calamus simplicifolius HOM05M002477 ORTHO05M002749 4.1e-164 581.3 464 63.1
p5.00_sc00060_p0083 Elaeis guineensis HOM05M002477 ORTHO05M002749 9.1e-164 580.1 464 62.1
Zosma06g29590 Zostera marina HOM05M002477 ORTHO05M002749 9.1e-164 580.1 462 62.6
p5.00_sc00034_p0129 Elaeis guineensis HOM05M002477 ORTHO05M002749 4.5e-163 577.8 439 65.6
Ma11_g09650 Musa acuminata HOM05M002477 ORTHO05M002749 2.5e-161 572.0 464 63.4
AT2G30700 Arabidopsis thaliana HOM05M002477 ORTHO05M002749 1.0e-159 566.6 458 62.4
Ma08_g19100 Musa acuminata HOM05M002477 ORTHO05M002749 5.1e-159 564.3 450 63.3
p5.00_sc00006_p0126 Elaeis guineensis HOM05M002477 ORTHO05M002749 7.4e-158 560.5 423 65.2
Spipo4G0088500 Spirodela polyrhiza HOM05M002477 ORTHO05M002749 4.8e-157 557.8 435 64.6
Aco013551 Ananas comosus HOM05M002477 ORTHO05M002749 5.0e-154 547.7 455 62.0
Asa6G00767 Allium sativum HOM05M002477 ORTHO05M002749 2.7e-152 542.0 457 59.1
ATR0743G178 Amborella trichopoda HOM05M002477 ORTHO05M002749 2.7e-152 542.0 454 59.7
CALSI_Maker00005376 Calamus simplicifolius HOM05M002477 ORTHO05M002749 3.3e-150 535.0 388 67.8
DDU145G0030 Dioscorea dumetorum HOM05M002477 ORTHO05M002749 3.5e-147 525.0 422 63.5
Pahal.9G404200 Panicum hallii HOM05M002477 ORTHO05M002749 2.6e-142 508.8 462 55.8
HPP92_023717 Vanilla planifolia HOM05M002477 ORTHO05M002749 4.8e-141 504.6 457 56.2
Misin02G288700 Miscanthus sinensis HOM05M002477 ORTHO05M002749 3.1e-140 501.9 460 56.3
Misin01G298300 Miscanthus sinensis HOM05M002477 ORTHO05M002749 5.3e-140 501.1 460 55.9
Sspon.01G0013470-1A Saccharum spontaneum HOM05M002477 ORTHO05M002749 4.5e-139 498.0 450 56.4
Sobic.001G315400 Sorghum bicolor HOM05M002477 ORTHO05M002749 8.5e-138 493.8 458 55.2
OsKitaake10g172000 Oryza sativa Kitaake HOM05M002477 ORTHO05M002749 2.5e-137 492.3 463 55.1
Os10g0534100 Oryza sativa ssp. japonica HOM05M002477 ORTHO05M002749 2.5e-137 492.3 463 55.1
Ot_Chr1_g21700 Oropetium thomaeum HOM05M002477 ORTHO05M002749 3.2e-137 491.9 462 55.2
OsR498G1019095000.01 Oryza sativa ssp. indica HOM05M002477 ORTHO05M002749 5.5e-137 491.1 463 55.1
GWHGAZTO009548 Oryza alta HOM05M002477 ORTHO05M002749 7.2e-137 490.7 461 55.1
GWHGAORA053002 Cenchrus purpureus HOM05M002477 ORTHO05M002749 9.4e-137 490.3 461 54.4
PH02Gene22574 Phyllostachys edulis HOM05M002477 ORTHO05M002749 1.6e-136 489.6 459 55.1
Seita.9G343700 Setaria italica HOM05M002477 ORTHO05M002749 2.7e-136 488.8 462 54.5
Sevir.9G348500 Setaria viridis HOM05M002477 ORTHO05M002749 2.7e-136 488.8 462 54.5
PH02Gene46927 Phyllostachys edulis HOM05M002477 ORTHO05M002749 4.7e-136 488.0 453 54.7
GWHGAORA028138 Cenchrus purpureus HOM05M002477 ORTHO05M002749 6.1e-136 487.6 461 54.2
GWHGAZTO061841 Oryza alta HOM05M002477 ORTHO05M002749 8.0e-136 487.3 459 54.5
Sspon.01G0013470-2B Saccharum spontaneum HOM05M002477 ORTHO05M002749 5.2e-135 484.6 455 56.0
OB10G23920 Oryza brachyantha HOM05M002477 ORTHO05M002749 8.8e-135 483.8 461 54.2
GWHGASIY002344 Secale cereale HOM05M002477 ORTHO05M002749 5.7e-134 481.1 452 55.5
TraesCS1A03G0494900 Triticum aestivum HOM05M002477 ORTHO05M002749 9.8e-134 480.3 452 55.5
CDE02G2947 Ceratophyllum demersum HOM05M002477 ORTHO05M002749 1.3e-133 479.9 451 54.3
TraesCS1B03G0599000 Triticum aestivum HOM05M002477 ORTHO05M002749 1.7e-133 479.6 456 54.4
Sspon.01G0013470-4D Saccharum spontaneum HOM05M002477 ORTHO05M002749 3.7e-133 478.4 430 57.0
Bradi3g32020 Brachypodium distachyon HOM05M002477 ORTHO05M002749 8.3e-133 477.2 447 55.0
TraesCS1D03G0492200 Triticum aestivum HOM05M002477 ORTHO05M002749 8.3e-133 477.2 458 55.2
Zm00001eb021900 Zea mays B73 HOM05M002477 ORTHO05M002749 8.3e-133 477.2 436 56.0
Horvu_MOREX_1H01G312700 Hordeum vulgare HOM05M002477 ORTHO05M002749 1.4e-132 476.5 456 54.8
TRITD1Av1G120630 Triticum turgidum HOM05M002477 ORTHO05M002749 8.6e-130 467.2 435 55.9
EJB05_23610 Eragrostis curvula HOM05M002477 ORTHO05M002749 9.5e-129 463.8 389 59.9
TRITD1Bv1G120970 Triticum turgidum HOM05M002477 ORTHO05M002749 1.2e-128 463.4 443 54.6
Zm00007a00033734 Zea mays B104 HOM05M002477 ORTHO05M002749 2.2e-125 452.6 387 58.9
SEGI_08422 Sequoiadendron giganteum HOM05M002477 ORTHO05M002749 4.1e-124 448.4 439 53.3
CDE07G1029 Ceratophyllum demersum HOM05M002477 ORTHO05M002749 2.9e-122 442.2 448 54.7
Sspon.01G0013470-3C Saccharum spontaneum HOM05M002477 ORTHO05M002749 3.7e-117 425.2 338 61.2
CALSI_Maker00012291 Calamus simplicifolius HOM05M002477 ORTHO05M002749 1.8e-116 422.9 386 59.8
GWHGAORA028165 Cenchrus purpureus HOM05M002477 ORTHO05M002749 2.0e-102 376.3 422 47.9
AET1Gv20489700 Aegilops tauschii HOM05M002477 ORTHO05M002749 2.4e-100 369.4 367 52.6
TRIDC1BG034270 Triticum dicoccoides HOM05M002477 ORTHO05M002749 3.2e-100 369.0 371 51.5
TRIDC1AG027880 Triticum dicoccoides HOM05M002477 ORTHO05M002749 1.4e-92 343.6 349 52.1
SMO115G0338 Selaginella moellendorffii HOM05M002477 ORTHO05M002749 5.8e-86 321.6 329 49.2
ATR0752G214 Amborella trichopoda HOM05M002477 ORTHO05M002749 3.2e-84 315.8 407 44.7
Ma04_g40000 Musa acuminata HOM05M002477 ORTHO05M002749 7.1e-84 314.7 430 42.3
p5.00_sc00225_p0006 Elaeis guineensis HOM05M002477 ORTHO05M002749 3.5e-83 312.4 401 44.1
Zosma03g24720 Zostera marina HOM05M002477 ORTHO05M002749 3.0e-82 309.3 389 42.7
p5.00_sc00038_p0074 Elaeis guineensis HOM05M002477 ORTHO05M002749 5.1e-82 308.5 391 43.5
Ma07_g00220 Musa acuminata HOM05M002477 ORTHO05M002749 1.9e-81 306.6 413 43.1
Aco010496 Ananas comosus HOM05M002477 ORTHO05M002749 4.3e-81 305.4 441 40.6
Pp3c13_1140 Physcomitrium patens HOM05M002477 ORTHO05M002749 4.3e-81 305.4 374 44.7
Potri.007G133733 Populus trichocarpa HOM05M002477 ORTHO05M002749 4.3e-81 305.4 233 65.2
Asa6G00557 Allium sativum HOM05M002477 ORTHO05M002749 1.3e-80 303.9 406 42.6
Potri.004G016000 Populus trichocarpa HOM05M002477 ORTHO05M002749 2.1e-80 303.1 388 42.0
MBI18_g14749_MAGBIO Magnolia biondii HOM05M002477 ORTHO05M002749 1.8e-79 300.1 389 44.0
evm.TU.AsparagusV1_07.3778.V1.1 Asparagus officinalis HOM05M002477 ORTHO05M002749 4.0e-79 298.9 392 43.9
OB07G10260 Oryza brachyantha HOM05M002477 ORTHO05M002749 9.0e-79 297.7 416 40.6
Glyma.15G107200 Glycine max HOM05M002477 ORTHO05M002749 1.2e-78 297.4 401 41.4
AT1G61900 Arabidopsis thaliana HOM05M002477 ORTHO05M002749 1.5e-78 297.0 423 41.8
MBI02_g07155_MAGBIO Magnolia biondii HOM05M002477 ORTHO05M002749 5.8e-78 295.0 370 44.1
Spipo8G0008200 Spirodela polyrhiza HOM05M002477 ORTHO05M002749 1.7e-77 293.5 397 41.3
CALSI_Maker00034910 Calamus simplicifolius HOM05M002477 ORTHO05M002749 2.9e-77 292.7 367 43.1
DDU693G0355 Dioscorea dumetorum HOM05M002477 ORTHO05M002749 2.9e-77 292.7 415 41.2
Mapoly0002s0205 Marchantia polymorpha HOM05M002477 ORTHO05M002749 2.9e-77 292.7 354 44.6
evm.TU.AsparagusV1_03.1241.V1.1 Asparagus officinalis HOM05M002477 ORTHO05M002749 3.8e-77 292.4 411 41.1
Glyma.13G205300 Glycine max HOM05M002477 ORTHO05M002749 3.8e-77 292.4 410 40.5
Glyma.12G099200 Glycine max HOM05M002477 ORTHO05M002749 4.9e-77 292.0 405 41.0
Potri.011G003000 Populus trichocarpa HOM05M002477 ORTHO05M002749 6.4e-77 291.6 400 40.0
GWHGASIY008450 Secale cereale HOM05M002477 ORTHO05M002749 6.4e-77 291.6 393 42.7
Bradi1g59710 Brachypodium distachyon HOM05M002477 ORTHO05M002749 1.9e-76 290.0 371 42.9
Misin03G035000 Miscanthus sinensis HOM05M002477 ORTHO05M002749 2.4e-76 289.7 436 39.4
Seita.J004200 Setaria italica HOM05M002477 ORTHO05M002749 3.2e-76 289.3 421 39.4
Sevir.2G002500 Setaria viridis HOM05M002477 ORTHO05M002749 3.2e-76 289.3 421 39.4
Pahal.2G002000 Panicum hallii HOM05M002477 ORTHO05M002749 5.4e-76 288.5 437 39.4
Solyc02g080500.3 Solanum lycopersicum HOM05M002477 ORTHO05M002749 5.4e-76 288.5 380 41.8
Zm00001eb298090 Zea mays B73 HOM05M002477 ORTHO05M002749 5.4e-76 288.5 421 39.9
Horvu_MOREX_2H01G387500 Hordeum vulgare HOM05M002477 ORTHO05M002749 9.3e-76 287.7 413 40.7
Sobic.002G002100 Sorghum bicolor HOM05M002477 ORTHO05M002749 1.2e-75 287.3 425 39.3
GWHGAORA010491 Cenchrus purpureus HOM05M002477 ORTHO05M002749 1.6e-75 287.0 422 40.3
Misin04G005200 Miscanthus sinensis HOM05M002477 ORTHO05M002749 3.5e-75 285.8 387 40.8
HPP92_000851 Vanilla planifolia HOM05M002477 ORTHO05M002749 3.5e-75 285.8 432 38.9
GWHGAZTO089390 Oryza alta HOM05M002477 ORTHO05M002749 1.3e-74 283.9 337 43.3
OsKitaake07g001700 Oryza sativa Kitaake HOM05M002477 ORTHO05M002749 1.3e-74 283.9 382 40.6
Os07g0102300 Oryza sativa ssp. japonica HOM05M002477 ORTHO05M002749 1.3e-74 283.9 382 40.6
GWHGAZTO041669 Oryza alta HOM05M002477 ORTHO05M002749 2.3e-74 283.1 379 40.6
CDE05G1911 Ceratophyllum demersum HOM05M002477 ORTHO05M002749 5.1e-74 282.0 391 39.9
PH02Gene47869 Phyllostachys edulis HOM05M002477 ORTHO05M002749 6.7e-74 281.6 337 43.9
V3.Lp_chr2_0G13528 Lolium perenne HOM05M002477 ORTHO05M002749 8.7e-74 281.2 413 40.0
CALSI_Maker00034841 Calamus simplicifolius HOM05M002477 ORTHO05M002749 1.9e-73 280.0 184 72.3
PH02Gene45067 Phyllostachys edulis HOM05M002477 ORTHO05M002749 7.4e-73 278.1 439 38.0
Dexi9B01G0029380 Digitaria exilis HOM05M002477 ORTHO05M002749 9.6e-73 277.7 209 63.2
Zjn_sc00053.1.g00640.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M002477 ORTHO05M002749 1.6e-72 276.9 290 49.7
Solyc07g052360.2 Solanum lycopersicum HOM05M002477 ORTHO05M002749 1.4e-71 273.9 475 36.4
GWHGAORA010515 Cenchrus purpureus HOM05M002477 ORTHO05M002749 2.6e-70 269.6 405 40.0
Solyc03g031680.3 Solanum lycopersicum HOM05M002477 ORTHO05M002749 1.7e-69 266.9 453 36.2
TraesCS2A03G0618700 Triticum aestivum HOM05M002477 ORTHO05M002749 1.5e-62 243.8 331 41.1
TraesCS2B03G0741800 Triticum aestivum HOM05M002477 ORTHO05M002749 1.7e-61 240.4 327 41.6
TRITD2Bv1G131260 Triticum turgidum HOM05M002477 ORTHO05M002749 3.8e-61 239.2 331 40.5
CALSI_Maker00006209 Calamus simplicifolius HOM05M002477 ORTHO05M002749 7.1e-60 235.0 175 67.4
AET2Gv20599000 Aegilops tauschii HOM05M002477 ORTHO05M002749 1.6e-59 233.8 317 41.0
EJB05_13579 Eragrostis curvula HOM05M002477 ORTHO05M002749 6.7e-58 228.4 300 40.3
EJB05_13634 Eragrostis curvula HOM05M002477 ORTHO05M002749 6.7e-58 228.4 300 40.3
Sspon.02G0026300-1A Saccharum spontaneum HOM05M002477 ORTHO05M002749 8.7e-58 228.0 347 38.3
Sspon.02G0026310-2B Saccharum spontaneum HOM05M002477 ORTHO05M002749 1.5e-57 227.3 342 38.0
Ot_Chr7_g21937 Oropetium thomaeum HOM05M002477 ORTHO05M002749 1.9e-57 226.9 299 40.1
Asa7G03224 Allium sativum HOM05M002477 ORTHO05M002749 3.7e-48 196.1 183 52.5
SEGI_24144 Sequoiadendron giganteum HOM05M002477 ORTHO05M002749 1.8e-47 193.7 277 41.2
Pp3c5_15330 Physcomitrium patens HOM05M002477 ORTHO05M002749 1.9e-44 183.7 241 40.2
Sspon.02G0026310-1A Saccharum spontaneum HOM05M002477 ORTHO05M002749 3.6e-43 179.5 392 31.1
TRITD2Av1G140890 Triticum turgidum HOM05M002477 ORTHO05M002749 3.6e-35 152.9 234 38.5
Dexi9A01G0030480 Digitaria exilis HOM05M002477 ORTHO05M002749 2.3e-34 150.2 109 67.0
Glyma.06G305300 Glycine max HOM05M002477 ORTHO05M002749 3.9e-34 149.4 218 39.9
CDE07G1023 Ceratophyllum demersum HOM05M002477 ORTHO05M002749 2.0e-33 147.1 89 77.5
Dexi2B01G0000110 Digitaria exilis HOM05M002477 ORTHO05M002749 8.2e-32 141.7 193 40.9
CALSI_Maker00011727 Calamus simplicifolius HOM05M002477 ORTHO05M002749 5.3e-31 139.0 95 70.5
Dexi2A01G0000140 Digitaria exilis HOM05M002477 ORTHO05M002749 4.5e-30 136.0 248 34.7
GWHGAORA010531 Cenchrus purpureus HOM05M002477 ORTHO05M002749 1.0e-29 134.8 128 50.8
GWHGAORA010530 Cenchrus purpureus HOM05M002477 ORTHO05M002749 7.2e-28 128.6 145 43.4
Pp3c19_7530 Physcomitrium patens HOM05M002477 ORTHO05M002749 2.5e-20 103.6 155 38.1
Zjn_sc00102.1.g01280.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M002477 ORTHO05M002749 7.2e-20 102.1 63 76.2
CDE07G1207 Ceratophyllum demersum HOM05M002477 ORTHO05M002749 6.3e-16 89.0 76 67.1
Zjn_sc00162.1.g00140.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M002477 ORTHO05M002749 8.3e-16 88.6 140 38.6
Pp3c13_16530 Physcomitrium patens HOM05M002477 ORTHO05M002749 2.9e-13 80.1 79 53.2
CALSI_Maker00020469 Calamus simplicifolius HOM05M002477 ORTHO05M002749 9.5e-12 75.1 103 43.7


User provided reference genes

Program Settings