Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g042760.1 Solanum lycopersicum HOM05M001995 ORTHO05M002172 2.2e-67 258.1 132 100.0
Solyc11g071990.2 Solanum lycopersicum HOM05M001995 ORTHO05M002172 3.3e-31 137.9 130 58.5
Solyc11g071440.2 Solanum lycopersicum HOM05M001995 ORTHO05M002172 1.7e-30 135.6 130 57.7
Glyma.11G179300 Glycine max HOM05M001995 ORTHO05M002172 3.7e-22 107.8 130 46.2
Glyma.12G094000 Glycine max HOM05M001995 ORTHO05M002172 1.4e-21 105.9 141 46.8
CALSI_Maker00037852 Calamus simplicifolius HOM05M001995 ORTHO05M002172 2.4e-21 105.1 135 47.4
Aco007498 Ananas comosus HOM05M001995 ORTHO05M002172 3.1e-21 104.8 130 46.9
Glyma.11G179400 Glycine max HOM05M001995 ORTHO05M002172 3.1e-21 104.8 141 45.4
Aco006531 Ananas comosus HOM05M001995 ORTHO05M002172 7.0e-21 103.6 130 46.9
p5.00_sc00019_p0177 Elaeis guineensis HOM05M001995 ORTHO05M002172 1.2e-20 102.8 135 45.9
Glyma.12G094100 Glycine max HOM05M001995 ORTHO05M002172 2.0e-20 102.1 130 44.6
AT3G44190 Arabidopsis thaliana HOM05M001995 ORTHO05M002172 2.7e-20 101.7 130 45.4
HPP92_005753 Vanilla planifolia HOM05M001995 ORTHO05M002172 2.7e-20 101.7 131 43.5
Aco018262 Ananas comosus HOM05M001995 ORTHO05M002172 3.5e-20 101.3 130 46.2
DDU333G0013 Dioscorea dumetorum HOM05M001995 ORTHO05M002172 3.5e-20 101.3 140 42.9
DDU165G0031 Dioscorea dumetorum HOM05M001995 ORTHO05M002172 4.5e-20 100.9 130 45.4
DDU556G0843 Dioscorea dumetorum HOM05M001995 ORTHO05M002172 4.5e-20 100.9 130 45.4
p5.00_sc00181_p0018 Elaeis guineensis HOM05M001995 ORTHO05M002172 4.5e-20 100.9 144 42.4
DDU506G0113 Dioscorea dumetorum HOM05M001995 ORTHO05M002172 5.9e-20 100.5 140 42.9
Glyma.12G093900 Glycine max HOM05M001995 ORTHO05M002172 5.9e-20 100.5 130 44.6
Potri.001G217800 Populus trichocarpa HOM05M001995 ORTHO05M002172 5.9e-20 100.5 130 44.6
HPP92_005787 Vanilla planifolia HOM05M001995 ORTHO05M002172 5.9e-20 100.5 131 45.0
HPP92_005799 Vanilla planifolia HOM05M001995 ORTHO05M002172 5.9e-20 100.5 131 45.0
CDE02G3220 Ceratophyllum demersum HOM05M001995 ORTHO05M002172 7.7e-20 100.1 140 42.9
GWHGAORA015360 Cenchrus purpureus HOM05M001995 ORTHO05M002172 1.3e-19 99.4 140 42.1
SEGI_25576 Sequoiadendron giganteum HOM05M001995 ORTHO05M002172 1.3e-19 99.4 130 42.3
evm.TU.AsparagusV1_04.739.V1.1 Asparagus officinalis HOM05M001995 ORTHO05M002172 2.2e-19 98.6 130 43.1
CALSI_Maker00001283 Calamus simplicifolius HOM05M001995 ORTHO05M002172 2.2e-19 98.6 130 43.8
PH02Gene24747 Phyllostachys edulis HOM05M001995 ORTHO05M002172 2.2e-19 98.6 140 42.9
evm.TU.AsparagusV1_05.2469.V1.1 Asparagus officinalis HOM05M001995 ORTHO05M002172 2.9e-19 98.2 133 45.1
evm.TU.AsparagusV1_09.126.V1.1 Asparagus officinalis HOM05M001995 ORTHO05M002172 2.9e-19 98.2 131 42.0
HPP92_017138 Vanilla planifolia HOM05M001995 ORTHO05M002172 2.9e-19 98.2 130 46.2
AT5G22140 Arabidopsis thaliana HOM05M001995 ORTHO05M002172 3.8e-19 97.8 130 45.4
OsKitaake02g040500 Oryza sativa Kitaake HOM05M001995 ORTHO05M002172 3.8e-19 97.8 140 42.1
OsR498G0202980900.01 Oryza sativa ssp. indica HOM05M001995 ORTHO05M002172 3.8e-19 97.8 140 42.1
Os02g0150300 Oryza sativa ssp. japonica HOM05M001995 ORTHO05M002172 3.8e-19 97.8 140 42.1
GWHGAORA015319 Cenchrus purpureus HOM05M001995 ORTHO05M002172 6.5e-19 97.1 140 40.7
GWHGAORA058340 Cenchrus purpureus HOM05M001995 ORTHO05M002172 6.5e-19 97.1 140 40.7
Ma09_g13310 Musa acuminata HOM05M001995 ORTHO05M002172 8.5e-19 96.7 133 44.4
Seita.1G087500 Setaria italica HOM05M001995 ORTHO05M002172 8.5e-19 96.7 140 40.0
Sevir.1G085700 Setaria viridis HOM05M001995 ORTHO05M002172 8.5e-19 96.7 140 40.0
Ma09_g23390 Musa acuminata HOM05M001995 ORTHO05M002172 1.1e-18 96.3 130 41.5
Ma08_g07680 Musa acuminata HOM05M001995 ORTHO05M002172 1.5e-18 95.9 134 42.5
Ot_Chr1_g14361 Oropetium thomaeum HOM05M001995 ORTHO05M002172 1.9e-18 95.5 140 41.4
Pahal.1G036200 Panicum hallii HOM05M001995 ORTHO05M002172 2.5e-18 95.1 140 41.4
SEGI_16166 Sequoiadendron giganteum HOM05M001995 ORTHO05M002172 2.5e-18 95.1 130 43.1
SEGI_21182 Sequoiadendron giganteum HOM05M001995 ORTHO05M002172 2.5e-18 95.1 132 40.9
Zosma03g17150 Zostera marina HOM05M001995 ORTHO05M002172 3.2e-18 94.7 130 40.8
Asa2G04051 Allium sativum HOM05M001995 ORTHO05M002172 4.2e-18 94.4 133 43.6
MBI17_g40151_MAGBIO Magnolia biondii HOM05M001995 ORTHO05M002172 4.2e-18 94.4 130 43.8
GWHGAZTO016571 Oryza alta HOM05M001995 ORTHO05M002172 4.2e-18 94.4 140 40.7
GWHGAZTO068322 Oryza alta HOM05M001995 ORTHO05M002172 4.2e-18 94.4 140 40.7
SEGI_07275 Sequoiadendron giganteum HOM05M001995 ORTHO05M002172 4.2e-18 94.4 130 42.3
SEGI_20138 Sequoiadendron giganteum HOM05M001995 ORTHO05M002172 4.2e-18 94.4 130 42.3
Bradi3g04010 Brachypodium distachyon HOM05M001995 ORTHO05M002172 5.5e-18 94.0 140 39.3
OB02G13330 Oryza brachyantha HOM05M001995 ORTHO05M002172 5.5e-18 94.0 140 42.9
SEGI_07884 Sequoiadendron giganteum HOM05M001995 ORTHO05M002172 5.5e-18 94.0 130 41.5
evm.TU.AsparagusV1_05.2471.V1.1 Asparagus officinalis HOM05M001995 ORTHO05M002172 7.2e-18 93.6 131 44.3
Ma03_g23690 Musa acuminata HOM05M001995 ORTHO05M002172 7.2e-18 93.6 133 39.8
Sspon.04G0018310-1P Saccharum spontaneum HOM05M001995 ORTHO05M002172 7.2e-18 93.6 140 40.0
Sspon.04G0018310-3C Saccharum spontaneum HOM05M001995 ORTHO05M002172 7.2e-18 93.6 140 40.0
Sspon.04G0028980-1B Saccharum spontaneum HOM05M001995 ORTHO05M002172 7.2e-18 93.6 140 40.0
Spipo4G0107800 Spirodela polyrhiza HOM05M001995 ORTHO05M002172 7.2e-18 93.6 130 43.1
TRITD3Av1G219180 Triticum turgidum HOM05M001995 ORTHO05M002172 9.4e-18 93.2 135 44.4
Sobic.004G042000 Sorghum bicolor HOM05M001995 ORTHO05M002172 1.2e-17 92.8 140 39.3
Aco016769 Ananas comosus HOM05M001995 ORTHO05M002172 1.6e-17 92.4 130 39.2
Pp3c6_7760 Physcomitrium patens HOM05M001995 ORTHO05M002172 1.6e-17 92.4 130 41.5
CDE06G0524 Ceratophyllum demersum HOM05M001995 ORTHO05M002172 2.7e-17 91.7 140 40.7
Misin08G040600 Miscanthus sinensis HOM05M001995 ORTHO05M002172 2.7e-17 91.7 140 39.3
SEGI_01692 Sequoiadendron giganteum HOM05M001995 ORTHO05M002172 3.6e-17 91.3 126 41.3
Solyc05g055180.3 Solanum lycopersicum HOM05M001995 ORTHO05M002172 3.6e-17 91.3 138 42.0
p5.00_sc00020_p0088 Elaeis guineensis HOM05M001995 ORTHO05M002172 4.7e-17 90.9 131 42.0
Horvu_MOREX_3H01G512300 Hordeum vulgare HOM05M001995 ORTHO05M002172 4.7e-17 90.9 135 41.5
GWHGASIY005903 Secale cereale HOM05M001995 ORTHO05M002172 4.7e-17 90.9 140 38.6
EJB05_25258 Eragrostis curvula HOM05M001995 ORTHO05M002172 6.1e-17 90.5 130 39.2
Misin07G370200 Miscanthus sinensis HOM05M001995 ORTHO05M002172 6.1e-17 90.5 130 40.0
Sobic.004G041900 Sorghum bicolor HOM05M001995 ORTHO05M002172 6.1e-17 90.5 131 42.0
Zm00001eb365150 Zea mays B73 HOM05M001995 ORTHO05M002172 6.1e-17 90.5 140 38.6
Zm00007a00003726 Zea mays B104 HOM05M001995 ORTHO05M002172 6.1e-17 90.5 140 38.6
TraesCS6A03G0286800 Triticum aestivum HOM05M001995 ORTHO05M002172 8.0e-17 90.1 140 37.9
TRIDC6AG016040 Triticum dicoccoides HOM05M001995 ORTHO05M002172 8.0e-17 90.1 140 37.9
Zm00007a00041284 Zea mays B104 HOM05M001995 ORTHO05M002172 8.0e-17 90.1 140 37.9
Horvu_MOREX_6H01G148500 Hordeum vulgare HOM05M001995 ORTHO05M002172 1.0e-16 89.7 140 37.9
MBI01_g04532_MAGBIO Magnolia biondii HOM05M001995 ORTHO05M002172 1.0e-16 89.7 135 45.2
Ma04_g02270 Musa acuminata HOM05M001995 ORTHO05M002172 1.0e-16 89.7 140 41.4
Sspon.04G0025510-1B Saccharum spontaneum HOM05M001995 ORTHO05M002172 1.0e-16 89.7 130 40.0
TraesCS6D03G0242900 Triticum aestivum HOM05M001995 ORTHO05M002172 1.0e-16 89.7 140 37.9
TRIDC6BG021780 Triticum dicoccoides HOM05M001995 ORTHO05M002172 1.0e-16 89.7 140 37.9
TRITD6Bv1G052080 Triticum turgidum HOM05M001995 ORTHO05M002172 1.0e-16 89.7 140 37.9
Zm00001eb207980 Zea mays B73 HOM05M001995 ORTHO05M002172 1.8e-16 89.0 140 37.9
V3.Lp_chr6_0G3096 Lolium perenne HOM05M001995 ORTHO05M002172 2.3e-16 88.6 130 39.2
Solyc11g006540.2 Solanum lycopersicum HOM05M001995 ORTHO05M002172 2.3e-16 88.6 130 46.9
PH02Gene38187 Phyllostachys edulis HOM05M001995 ORTHO05M002172 3.0e-16 88.2 135 41.5
Sspon.04G0018310-2B Saccharum spontaneum HOM05M001995 ORTHO05M002172 3.0e-16 88.2 140 37.9
Sspon.04G0028980-2D Saccharum spontaneum HOM05M001995 ORTHO05M002172 4.0e-16 87.8 140 37.9
Dexi8B01G0003220 Digitaria exilis HOM05M001995 ORTHO05M002172 5.2e-16 87.4 132 37.9
Dexi8A01G0003720 Digitaria exilis HOM05M001995 ORTHO05M002172 8.8e-16 86.7 132 37.9
V3.Lp_chr3_0G20300 Lolium perenne HOM05M001995 ORTHO05M002172 8.8e-16 86.7 139 42.4
ATR0772G054 Amborella trichopoda HOM05M001995 ORTHO05M002172 1.5e-15 85.9 133 42.1
Misin09G036100 Miscanthus sinensis HOM05M001995 ORTHO05M002172 2.0e-15 85.5 131 38.2
Sobic.005G044600 Sorghum bicolor HOM05M001995 ORTHO05M002172 2.6e-15 85.1 131 36.6
Asa6G01116 Allium sativum HOM05M001995 ORTHO05M002172 4.4e-15 84.3 131 38.9
Zm00007a00042280 Zea mays B104 HOM05M001995 ORTHO05M002172 4.4e-15 84.3 131 37.4
Pahal.8G034300 Panicum hallii HOM05M001995 ORTHO05M002172 1.3e-14 82.8 131 37.4
Sspon.04G0025510-2C Saccharum spontaneum HOM05M001995 ORTHO05M002172 1.3e-14 82.8 130 36.9
Sspon.05G0018990-2B Saccharum spontaneum HOM05M001995 ORTHO05M002172 1.3e-14 82.8 131 37.4
Sspon.05G0018990-1A Saccharum spontaneum HOM05M001995 ORTHO05M002172 1.7e-14 82.4 131 36.6
GWHGAORA011319 Cenchrus purpureus HOM05M001995 ORTHO05M002172 2.2e-14 82.0 131 38.9
PH02Gene11459 Phyllostachys edulis HOM05M001995 ORTHO05M002172 2.2e-14 82.0 131 38.2
Sspon.05G0018990-3D Saccharum spontaneum HOM05M001995 ORTHO05M002172 2.2e-14 82.0 131 37.4
p5.00_sc00279_p0001 Elaeis guineensis HOM05M001995 ORTHO05M002172 2.8e-14 81.6 66 62.1
GWHGAORA042843 Cenchrus purpureus HOM05M001995 ORTHO05M002172 3.7e-14 81.3 131 38.2
AagrBONN_evm.TU.Sc2ySwM_228.1756 Anthoceros agrestis HOM05M001995 ORTHO05M002172 6.3e-14 80.5 130 38.5
Mapoly0121s0004 Marchantia polymorpha HOM05M001995 ORTHO05M002172 8.3e-14 80.1 139 34.5
Seita.8G040200 Setaria italica HOM05M001995 ORTHO05M002172 1.8e-13 79.0 131 36.6
Sevir.8G038700 Setaria viridis HOM05M001995 ORTHO05M002172 1.8e-13 79.0 131 36.6
GWHGAZTO010555 Oryza alta HOM05M001995 ORTHO05M002172 7.0e-13 77.0 131 35.9
SEGI_14516 Sequoiadendron giganteum HOM05M001995 ORTHO05M002172 9.1e-13 76.6 130 36.2
Mapoly0070s0041 Marchantia polymorpha HOM05M001995 ORTHO05M002172 1.2e-12 76.3 123 39.0
Pp3c16_18890 Physcomitrium patens HOM05M001995 ORTHO05M002172 2.0e-12 75.5 131 35.9
Zm00007a00025730 Zea mays B104 HOM05M001995 ORTHO05M002172 3.5e-12 74.7 130 38.5
SMO124G0002 Selaginella moellendorffii HOM05M001995 ORTHO05M002172 4.5e-12 74.3 130 34.6
SEGI_09061 Sequoiadendron giganteum HOM05M001995 ORTHO05M002172 5.9e-12 73.9 130 34.6
TraesCS4B03G0261900 Triticum aestivum HOM05M001995 ORTHO05M002172 7.7e-12 73.6 133 36.8
TRIDC4BG017810 Triticum dicoccoides HOM05M001995 ORTHO05M002172 7.7e-12 73.6 133 36.8
AET4Gv20241400 Aegilops tauschii HOM05M001995 ORTHO05M002172 1.0e-11 73.2 133 36.8
AagrBONN_evm.TU.Sc2ySwM_362.2426 Anthoceros agrestis HOM05M001995 ORTHO05M002172 1.0e-11 73.2 130 38.5
GWHGAZTO062732 Oryza alta HOM05M001995 ORTHO05M002172 1.0e-11 73.2 133 35.3
TraesCS4D03G0223400 Triticum aestivum HOM05M001995 ORTHO05M002172 1.0e-11 73.2 133 36.8
OB11G13120 Oryza brachyantha HOM05M001995 ORTHO05M002172 1.7e-11 72.4 131 35.1
OsKitaake11g039200 Oryza sativa Kitaake HOM05M001995 ORTHO05M002172 2.2e-11 72.0 132 34.1
OsR498G1119453100.01 Oryza sativa ssp. indica HOM05M001995 ORTHO05M002172 2.2e-11 72.0 132 34.1
Os11g0158200 Oryza sativa ssp. japonica HOM05M001995 ORTHO05M002172 2.2e-11 72.0 132 34.1
ATR0686G173 Amborella trichopoda HOM05M001995 ORTHO05M002172 2.9e-11 71.6 131 32.8
TraesCS4A03G0536000 Triticum aestivum HOM05M001995 ORTHO05M002172 2.9e-11 71.6 133 36.1
TRIDC4AG031970 Triticum dicoccoides HOM05M001995 ORTHO05M002172 2.9e-11 71.6 133 36.1
TRITD4Av1G147980 Triticum turgidum HOM05M001995 ORTHO05M002172 2.9e-11 71.6 133 36.1
AagrBONN_evm.TU.Sc2ySwM_344.3374 Anthoceros agrestis HOM05M001995 ORTHO05M002172 1.1e-10 69.7 127 38.6
GWHGASIY019226 Secale cereale HOM05M001995 ORTHO05M002172 1.1e-10 69.7 133 35.3
Horvu_MOREX_4H01G140000 Hordeum vulgare HOM05M001995 ORTHO05M002172 1.9e-10 68.9 146 33.6
PH02Gene49558 Phyllostachys edulis HOM05M001995 ORTHO05M002172 2.5e-10 68.6 126 35.7
CBR_g17681 Chara braunii HOM05M001995 ORTHO05M002172 4.2e-10 67.8 140 35.7
Zjn_sc00205.1.g00030.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M001995 ORTHO05M002172 5.5e-10 67.4 133 34.6
EJB05_29355 Eragrostis curvula HOM05M001995 ORTHO05M002172 7.2e-10 67.0 131 32.8
EJB05_29373 Eragrostis curvula HOM05M001995 ORTHO05M002172 9.5e-10 66.6 131 33.6
Bradi4g24990 Brachypodium distachyon HOM05M001995 ORTHO05M002172 2.1e-09 65.5 130 33.1
TraesCS6B03G0374500 Triticum aestivum HOM05M001995 ORTHO05M002172 2.1e-09 65.5 129 31.8
PH02Gene11462 Phyllostachys edulis HOM05M001995 ORTHO05M002172 2.7e-09 65.1 131 34.4
Zjn_sc00045.1.g03950.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M001995 ORTHO05M002172 3.0e-08 61.6 46 63.0
AET6Gv20314800 Aegilops tauschii HOM05M001995 ORTHO05M002172 5.7e-07 57.4 38 68.4
V3.Lp_chr4_0G12272 Lolium perenne HOM05M001995 ORTHO05M002172 5.7e-07 57.4 120 35.0
CALSI_Maker00003784 Calamus simplicifolius HOM05M001995 ORTHO05M002172 2.2e-06 55.5 59 52.5


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