Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g042620.3 Solanum lycopersicum HOM05M002395 ORTHO05M007318 2.0e-124 448.4 228 100.0
Ma10_g11230 Musa acuminata HOM05M002395 ORTHO05M007318 2.2e-67 258.8 185 69.2
Potri.019G074800 Populus trichocarpa HOM05M002395 ORTHO05M007318 2.1e-65 252.3 230 61.7
Asa5G01170 Allium sativum HOM05M002395 ORTHO05M007318 5.2e-64 247.7 164 73.2
Glyma.11G014300 Glycine max HOM05M002395 ORTHO05M007318 4.1e-61 238.0 182 63.7
AT1G71480 Arabidopsis thaliana HOM05M002395 ORTHO05M007318 2.7e-60 235.3 164 68.9
CDE05G0322 Ceratophyllum demersum HOM05M002395 ORTHO05M007318 7.7e-60 233.8 163 68.7
SEGI_29799 Sequoiadendron giganteum HOM05M002395 ORTHO05M007318 1.6e-57 226.1 148 68.9
Pahal.5G435100 Panicum hallii HOM05M002395 ORTHO05M007318 2.3e-56 222.2 199 58.3
HPP92_009206 Vanilla planifolia HOM05M002395 ORTHO05M007318 2.3e-56 222.2 160 65.6
Sspon.03G0017810-1A Saccharum spontaneum HOM05M002395 ORTHO05M007318 1.2e-55 219.9 180 60.6
GWHGAORA033187 Cenchrus purpureus HOM05M002395 ORTHO05M007318 3.4e-55 218.4 149 68.5
p5.00_sc00045_p0004 Elaeis guineensis HOM05M002395 ORTHO05M007318 4.4e-55 218.0 217 54.4
Ot_Chr3_g09779 Oropetium thomaeum HOM05M002395 ORTHO05M007318 5.7e-55 217.6 219 52.1
DDU739G0117 Dioscorea dumetorum HOM05M002395 ORTHO05M007318 9.8e-55 216.9 153 68.6
Potri.013G100600 Populus trichocarpa HOM05M002395 ORTHO05M007318 2.2e-54 215.7 167 60.5
Seita.5G063900 Setaria italica HOM05M002395 ORTHO05M007318 3.7e-54 214.9 148 68.2
Sevir.5G062900 Setaria viridis HOM05M002395 ORTHO05M007318 3.7e-54 214.9 173 61.8
TRITD2Av1G010430 Triticum turgidum HOM05M002395 ORTHO05M007318 3.7e-54 214.9 151 68.2
Horvu_MOREX_2H01G044400 Hordeum vulgare HOM05M002395 ORTHO05M007318 4.8e-54 214.5 175 61.1
TraesCSU03G0019200 Triticum aestivum HOM05M002395 ORTHO05M007318 4.8e-54 214.5 151 68.2
V3.Lp_chr2_0G1564 Lolium perenne HOM05M002395 ORTHO05M007318 6.3e-54 214.2 149 69.1
Pp3c17_5580 Physcomitrium patens HOM05M002395 ORTHO05M007318 8.3e-54 213.8 165 61.8
evm.TU.AsparagusV1_09.378.V1.1 Asparagus officinalis HOM05M002395 ORTHO05M007318 1.4e-53 213.0 141 69.5
EJB05_50093 Eragrostis curvula HOM05M002395 ORTHO05M007318 1.4e-53 213.0 173 60.7
EJB05_32068 Eragrostis curvula HOM05M002395 ORTHO05M007318 1.8e-53 212.6 173 60.7
OsKitaake09g027900 Oryza sativa Kitaake HOM05M002395 ORTHO05M007318 1.8e-53 212.6 162 64.8
Os09g0266000 Oryza sativa ssp. japonica HOM05M002395 ORTHO05M007318 1.8e-53 212.6 162 64.8
OsR498G0916871100.01 Oryza sativa ssp. indica HOM05M002395 ORTHO05M007318 2.4e-53 212.2 162 64.8
TraesCS2B03G0122700 Triticum aestivum HOM05M002395 ORTHO05M007318 2.4e-53 212.2 151 67.5
TRITD2Bv1G013950 Triticum turgidum HOM05M002395 ORTHO05M007318 2.4e-53 212.2 151 67.5
GWHGAORA041778 Cenchrus purpureus HOM05M002395 ORTHO05M007318 9.1e-53 210.3 215 54.0
GWHGAZTO050455 Oryza alta HOM05M002395 ORTHO05M007318 9.1e-53 210.3 157 65.6
Spipo7G0055100 Spirodela polyrhiza HOM05M002395 ORTHO05M007318 1.2e-52 209.9 160 63.8
ATR1089G026 Amborella trichopoda HOM05M002395 ORTHO05M007318 2.7e-52 208.8 148 68.2
Glyma.01G231300 Glycine max HOM05M002395 ORTHO05M007318 7.7e-52 207.2 124 75.0
Bradi5g02510 Brachypodium distachyon HOM05M002395 ORTHO05M007318 1.0e-51 206.8 151 65.6
MBI06_g21934_MAGBIO Magnolia biondii HOM05M002395 ORTHO05M007318 1.3e-51 206.5 162 62.3
Sobic.001G544000 Sorghum bicolor HOM05M002395 ORTHO05M007318 1.3e-51 206.5 154 62.3
GWHGAZTO096927 Oryza alta HOM05M002395 ORTHO05M007318 1.7e-51 206.1 149 67.8
CALSI_Maker00022841 Calamus simplicifolius HOM05M002395 ORTHO05M007318 6.1e-49 197.6 142 64.8
TRIDC2AG004960 Triticum dicoccoides HOM05M002395 ORTHO05M007318 1.8e-48 196.1 137 68.6
PH02Gene48152 Phyllostachys edulis HOM05M002395 ORTHO05M007318 1.5e-47 193.0 200 52.0
AagrBONN_evm.TU.Sc2ySwM_228.3581 Anthoceros agrestis HOM05M002395 ORTHO05M007318 5.7e-47 191.0 170 56.5
Sspon.03G0017810-1T Saccharum spontaneum HOM05M002395 ORTHO05M007318 9.8e-47 190.3 159 59.7
Sobic.003G110700 Sorghum bicolor HOM05M002395 ORTHO05M007318 4.9e-46 188.0 163 57.7
Aco003378 Ananas comosus HOM05M002395 ORTHO05M007318 6.3e-46 187.6 188 53.7
SMO200G0065 Selaginella moellendorffii HOM05M002395 ORTHO05M007318 9.2e-45 183.7 144 60.4
Zosma05g10230 Zostera marina HOM05M002729 ORTHO05M008596 3.6e-41 171.8 141 59.6
Mapoly0125s0025 Marchantia polymorpha HOM05M002395 ORTHO05M007318 8.0e-41 170.6 180 47.8
OB09G11690 Oryza brachyantha HOM05M002395 ORTHO05M007318 3.1e-40 168.7 117 67.5
Spipo0G0158100 Spirodela polyrhiza HOM05M002395 ORTHO05M007318 6.8e-40 167.5 113 64.6
Misin06G095400 Miscanthus sinensis HOM05M002395 ORTHO05M007318 2.6e-39 165.6 110 69.1
Sspon.03G0017810-3D Saccharum spontaneum HOM05M002395 ORTHO05M007318 9.8e-39 163.7 115 67.0
AET2Gv20074300 Aegilops tauschii HOM05M002395 ORTHO05M007318 9.2e-37 157.1 101 71.3
Dexi5A01G0010740 Digitaria exilis HOM05M002395 ORTHO05M007318 9.2e-37 157.1 175 49.7
Zm00007a00010401 Zea mays B104 HOM05M002395 ORTHO05M007318 9.2e-37 157.1 148 54.7
Dexi5B01G0011020 Digitaria exilis HOM05M002395 ORTHO05M007318 1.2e-36 156.8 100 72.0
Zjn_sc00043.1.g01450.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M002395 ORTHO05M007318 2.0e-36 156.0 119 63.9
GWHGASIY041870 Secale cereale HOM05M002395 ORTHO05M007318 3.5e-36 155.2 101 70.3
Spipo7G0055000 Spirodela polyrhiza HOM05M002395 ORTHO05M007318 2.0e-31 139.4 91 64.8
SEGI_04580 Sequoiadendron giganteum HOM05M002395 ORTHO05M007318 4.1e-29 131.7 179 37.4
TRIDC2BG005370 Triticum dicoccoides HOM05M002395 ORTHO05M007318 2.7e-28 129.0 78 73.1
Cre02.g088500 Chlamydomonas reinhardtii HOM05M006957 ORTHO05M007318 6.0e-28 127.9 185 37.8
p5.00_sc00016_p0029 Elaeis guineensis HOM05M002395 ORTHO05M007580 1.3e-27 126.7 143 41.3
AT5G41470 Arabidopsis thaliana HOM05M002395 ORTHO05M007580 3.0e-27 125.6 145 34.5
Zosma02g19130 Zostera marina HOM05M002395 ORTHO05M007580 1.1e-26 123.6 157 36.3
PRCOL_00006784 Prasinoderma coloniale HOM05M006957 ORTHO05M007318 1.9e-26 122.9 138 44.9
Zm00001eb127280 Zea mays B73 HOM05M002395 ORTHO05M007318 1.9e-26 122.9 82 69.5
MCO04G047 Micromonas commoda HOM05M006957 ORTHO05M007318 1.1e-24 117.1 134 39.6
HPP92_028537 Vanilla planifolia HOM05M002395 ORTHO05M007580 1.4e-24 116.7 140 35.7
Potri.001G100500 Populus trichocarpa HOM05M002395 ORTHO05M007580 2.3e-24 115.9 147 32.7
Potri.003G131500 Populus trichocarpa HOM05M002395 ORTHO05M007580 8.9e-24 114.0 145 31.0
CDE11G0610 Ceratophyllum demersum HOM05M002395 ORTHO05M007318 3.4e-23 112.1 122 43.4
Ma11_g02760 Musa acuminata HOM05M002395 ORTHO05M007580 9.9e-23 110.5 142 33.1
Solyc08g081450.4 Solanum lycopersicum HOM05M002395 ORTHO05M007580 1.7e-22 109.8 176 31.8
evm.TU.AsparagusV1_04.2508.V1.1 Asparagus officinalis HOM05M002395 ORTHO05M007580 2.9e-22 109.0 169 33.1
Glyma.01G221700 Glycine max HOM05M002395 ORTHO05M007580 2.9e-22 109.0 181 28.7
ATR0661G383 Amborella trichopoda HOM05M002395 ORTHO05M007580 3.2e-21 105.5 237 29.5
OB03G48970 Oryza brachyantha HOM05M002395 ORTHO05M007580 3.2e-21 105.5 143 34.3
GWHGAZTO027724 Oryza alta HOM05M002395 ORTHO05M007580 5.4e-21 104.8 141 34.8
Solyc12g056190.2 Solanum lycopersicum HOM05M002395 ORTHO05M007580 1.6e-20 103.2 174 31.0
MisinT138400 Miscanthus sinensis HOM05M002395 ORTHO05M007580 2.7e-20 102.4 143 34.3
PH02Gene41352 Phyllostachys edulis HOM05M002395 ORTHO05M007580 7.8e-20 100.9 156 30.8
PH02Gene25561 Phyllostachys edulis HOM05M002395 ORTHO05M007580 1.0e-19 100.5 156 30.8
Spipo11G0021000 Spirodela polyrhiza HOM05M002395 ORTHO05M007580 1.0e-19 100.5 156 32.1
evm.TU.AsparagusV1_04.2519.V1.1 Asparagus officinalis HOM05M002395 ORTHO05M007318 1.3e-19 100.1 163 33.1
MisinT139000 Miscanthus sinensis HOM05M002395 ORTHO05M007580 1.3e-19 100.1 143 32.9
Sevir.9G001800 Setaria viridis HOM05M002395 ORTHO05M007580 1.7e-19 99.8 162 32.1
GWHGAORA050171 Cenchrus purpureus HOM05M002395 ORTHO05M007580 2.3e-19 99.4 143 34.3
SEGI_16879 Sequoiadendron giganteum HOM05M002395 ORTHO05M007318 2.3e-19 99.4 159 31.4
Zm00001eb065330 Zea mays B73 HOM05M002395 ORTHO05M007580 2.3e-19 99.4 143 34.3
SEGI_30590 Sequoiadendron giganteum HOM05M002395 ORTHO05M007318 3.0e-19 99.0 109 41.3
GWHGASIY036806 Secale cereale HOM05M002395 ORTHO05M007580 5.1e-19 98.2 140 34.3
Dexi9B01G0000090 Digitaria exilis HOM05M002395 ORTHO05M007580 8.6e-19 97.4 152 31.6
EJB05_03705 Eragrostis curvula HOM05M002395 ORTHO05M007580 8.6e-19 97.4 143 32.2
Dexi9A01G0000080 Digitaria exilis HOM05M002395 ORTHO05M007580 1.1e-18 97.1 163 31.3
OsKitaake03g424600 Oryza sativa Kitaake HOM05M002395 ORTHO05M007580 1.5e-18 96.7 143 32.2
TraesCS5B03G1380800 Triticum aestivum HOM05M002395 ORTHO05M007580 1.5e-18 96.7 140 33.6
TraesCS5D03G1235100 Triticum aestivum HOM05M002395 ORTHO05M007580 2.5e-18 95.9 140 32.9
Bradi1g00485 Brachypodium distachyon HOM05M002395 ORTHO05M007580 7.3e-18 94.4 168 29.8
Zm00007a00007436 Zea mays B104 HOM05M002395 ORTHO05M007580 9.5e-18 94.0 126 35.7
TraesCS7B03G0002100 Triticum aestivum HOM05M002395 ORTHO05M007580 1.2e-17 93.6 140 32.9
TRITD7Bv1G000220 Triticum turgidum HOM05M002395 ORTHO05M007580 1.2e-17 93.6 140 32.9
Sspon.01G0047340-1B Saccharum spontaneum HOM05M002395 ORTHO05M007580 4.7e-17 91.7 126 34.1
Horvu_MOREX_5H01G756000 Hordeum vulgare HOM05M002395 ORTHO05M007580 8.1e-17 90.9 168 29.8
V3.Lp_chr3_0G8252 Lolium perenne HOM05M002395 ORTHO05M007580 3.1e-16 89.0 169 30.2
TRITD5Bv1G253490 Triticum turgidum HOM05M002395 ORTHO05M007580 3.1e-16 89.0 140 31.4
Asa1G00353 Allium sativum HOM05M002395 ORTHO05M007580 4.0e-16 88.6 138 30.4
GWHGASIY036807 Secale cereale HOM05M002395 ORTHO05M007580 6.8e-16 87.8 146 30.8
Seita.9G001500 Setaria italica HOM05M002395 ORTHO05M007580 6.8e-16 87.8 136 31.6
TraesCS5B03G1380900 Triticum aestivum HOM05M002395 ORTHO05M007580 2.0e-15 86.3 155 29.7
TraesCS5D03G1235200 Triticum aestivum HOM05M002395 ORTHO05M007580 2.6e-15 85.9 143 30.1
Sobic.001G001000 Sorghum bicolor HOM05M002395 ORTHO05M007580 3.4e-15 85.5 96 36.5
TRITD5Bv1G253480 Triticum turgidum HOM05M002395 ORTHO05M007580 3.4e-15 85.5 155 29.7
CALSI_Maker00012894 Calamus simplicifolius HOM05M002395 ORTHO05M007580 4.4e-15 85.1 123 36.6
CALSI_Maker00035954 Calamus simplicifolius HOM05M002395 ORTHO05M007580 4.4e-15 85.1 123 36.6
Pahal.9G000700 Panicum hallii HOM05M002395 ORTHO05M007580 5.8e-15 84.7 123 34.1
Horvu_MOREX_5H01G756100 Hordeum vulgare HOM05M002395 ORTHO05M007580 3.8e-14 82.0 143 29.4
TraesCS5D03G1235000 Triticum aestivum HOM05M002395 ORTHO05M007580 4.9e-14 81.6 170 27.1
HPP92_014516 Vanilla planifolia HOM05M004043 ORTHO05M004931 4.9e-14 81.6 143 30.1
TraesCS7B03G0002200 Triticum aestivum HOM05M002395 ORTHO05M007580 1.9e-13 79.7 172 25.6
TRITD7Bv1G000240 Triticum turgidum HOM05M002395 ORTHO05M007580 1.9e-13 79.7 172 25.6
Horvu_MOREX_5H01G755900 Hordeum vulgare HOM05M002395 ORTHO05M007580 2.4e-13 79.3 170 26.5
TRITD5Bv1G253500 Triticum turgidum HOM05M002395 ORTHO05M007580 7.1e-13 77.8 170 25.9
Potri.016G013200 Populus trichocarpa HOM05M011894 ORTHO05M009726 1.6e-12 76.6 178 30.3
TraesCS5B03G1380700 Triticum aestivum HOM05M002395 ORTHO05M007580 4.6e-12 75.1 170 25.9
MBI16_g31712_MAGBIO Magnolia biondii HOM05M002395 ORTHO05M007580 8.7e-11 70.9 110 32.7
CDE11G1237 Ceratophyllum demersum HOM05M000651 ORTHO05M001008 1.9e-10 69.7 179 28.5
ATR0712G049 Amborella trichopoda HOM05M011894 ORTHO05M009726 2.5e-10 69.3 218 25.2
MBI04_g39574_MAGBIO Magnolia biondii HOM05M002395 ORTHO05M007580 2.5e-10 69.3 81 39.5
Potri.002G070800 Populus trichocarpa HOM05M002395 ORTHO05M007580 9.6e-10 67.4 111 30.6
OsR498G0307406400.01 Oryza sativa ssp. indica HOM05M002395 ORTHO05M007580 1.2e-09 67.0 93 34.4
Misin05G090000 Miscanthus sinensis HOM05M002395 ORTHO05M007318 4.7e-09 65.1 177 31.6
Zm00007a00047382 Zea mays B104 HOM05M002395 ORTHO05M007580 3.4e-07 58.9 66 39.4
GWHGAZTO077586 Oryza alta HOM05M002395 ORTHO05M007580 3.8e-06 55.5 74 31.1
PRCOL_00005254 Prasinoderma coloniale HOM05M038489 ORTHO05M029858 4.9e-06 55.1 126 32.5


User provided reference genes

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