Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g042500.3 Solanum lycopersicum HOM05M005128 ORTHO05M006485 2.3e-76 288.1 151 100.0
MBI03_g28415_MAGBIO Magnolia biondii HOM05M005128 ORTHO05M006485 2.6e-32 141.7 93 74.2
Misin08G055800 Miscanthus sinensis HOM05M005128 ORTHO05M006485 1.3e-31 139.4 93 72.0
Sspon.04G0034010-1C Saccharum spontaneum HOM05M005128 ORTHO05M006485 2.9e-31 138.3 93 71.0
p5.00_sc00045_p0012 Elaeis guineensis HOM05M005128 ORTHO05M006485 5.0e-31 137.5 102 65.7
EJB05_34510 Eragrostis curvula HOM05M005128 ORTHO05M006485 6.5e-31 137.1 93 72.0
Ma08_g11900 Musa acuminata HOM05M005128 ORTHO05M006485 6.5e-31 137.1 106 63.2
Zm00001eb233200 Zea mays B73 HOM05M005128 ORTHO05M006485 1.5e-30 136.0 93 72.0
Zm00007a00015931 Zea mays B104 HOM05M005128 ORTHO05M006485 1.5e-30 136.0 93 72.0
evm.TU.AsparagusV1_02.520.V1.1 Asparagus officinalis HOM05M005128 ORTHO05M006485 1.9e-30 135.6 100 67.0
Misin07G055400 Miscanthus sinensis HOM05M005128 ORTHO05M006485 1.9e-30 135.6 93 69.9
Sevir.3G072100 Setaria viridis HOM05M005128 ORTHO05M006485 1.9e-30 135.6 129 58.1
Aco003372 Ananas comosus HOM05M005128 ORTHO05M006485 2.5e-30 135.2 100 68.0
PH02Gene07432 Phyllostachys edulis HOM05M005128 ORTHO05M006485 3.2e-30 134.8 97 68.0
Potri.019G072700 Populus trichocarpa HOM05M005128 ORTHO05M006485 3.2e-30 134.8 99 69.7
CALSI_Maker00040452 Calamus simplicifolius HOM05M005128 ORTHO05M006485 4.2e-30 134.4 100 68.0
GWHGAORA004712 Cenchrus purpureus HOM05M005128 ORTHO05M006485 4.2e-30 134.4 97 68.0
Pahal.3G086000 Panicum hallii HOM05M005128 ORTHO05M006485 4.2e-30 134.4 97 68.0
GWHGAORA039719 Cenchrus purpureus HOM05M005128 ORTHO05M006485 7.2e-30 133.7 129 57.4
Sobic.004G057100 Sorghum bicolor HOM05M005128 ORTHO05M006485 9.4e-30 133.3 93 69.9
OsKitaake05g004200 Oryza sativa Kitaake HOM05M005128 ORTHO05M006485 1.6e-29 132.5 93 68.8
Zosma05g10300 Zostera marina HOM05M005128 ORTHO05M006485 2.7e-29 131.7 91 68.1
GWHGAZTO017023 Oryza alta HOM05M005128 ORTHO05M006485 3.6e-29 131.3 125 59.2
Seita.3G070300 Setaria italica HOM05M005128 ORTHO05M006485 3.6e-29 131.3 129 57.4
Bradi2g39750 Brachypodium distachyon HOM05M005128 ORTHO05M006485 4.7e-29 131.0 125 59.2
Spipo4G0077200 Spirodela polyrhiza HOM05M005128 ORTHO05M006485 4.7e-29 131.0 93 67.7
TRITD1Av1G003710 Triticum turgidum HOM05M005128 ORTHO05M006485 4.7e-29 131.0 98 65.3
Ot_Chr5_g15238 Oropetium thomaeum HOM05M005128 ORTHO05M006485 6.1e-29 130.6 97 66.0
GWHGASIY000221 Secale cereale HOM05M005128 ORTHO05M006485 6.1e-29 130.6 129 57.4
TraesCS1B03G0038900 Triticum aestivum HOM05M005128 ORTHO05M006485 6.1e-29 130.6 98 65.3
GWHGAZTO032351 Oryza alta HOM05M005128 ORTHO05M006485 8.0e-29 130.2 93 68.8
OB05G10440 Oryza brachyantha HOM05M005128 ORTHO05M006485 8.0e-29 130.2 93 69.9
V3.Lp_chr1_0G182 Lolium perenne HOM05M005128 ORTHO05M006485 1.0e-28 129.8 97 66.0
TraesCS1A03G0037000 Triticum aestivum HOM05M005128 ORTHO05M006485 1.4e-28 129.4 129 56.6
TRIDC1AG001610 Triticum dicoccoides HOM05M005128 ORTHO05M006485 1.4e-28 129.4 129 56.6
Asa8G04170 Allium sativum HOM05M005128 ORTHO05M006485 1.8e-28 129.0 98 61.2
TRITD1Bv1G003420 Triticum turgidum HOM05M005128 ORTHO05M006485 1.8e-28 129.0 129 56.6
AET1Gv20034000 Aegilops tauschii HOM05M005128 ORTHO05M006485 2.3e-28 128.6 129 56.6
Horvu_MOREX_1H01G017100 Hordeum vulgare HOM05M005128 ORTHO05M006485 2.3e-28 128.6 129 55.8
TraesCS1D03G0027500 Triticum aestivum HOM05M005128 ORTHO05M006485 2.3e-28 128.6 129 56.6
TRIDC1BG002370 Triticum dicoccoides HOM05M005128 ORTHO05M006485 5.2e-28 127.5 129 55.8
Glyma.09G021200 Glycine max HOM05M005128 ORTHO05M006485 8.8e-28 126.7 92 70.7
ATR1089G039 Amborella trichopoda HOM05M005128 ORTHO05M006485 2.0e-27 125.6 91 69.2
AT1G71440 Arabidopsis thaliana HOM05M005128 ORTHO05M006485 5.7e-27 124.0 99 65.7
GWHGAORA004804 Cenchrus purpureus HOM05M005128 ORTHO05M006485 1.4e-25 119.4 92 65.2
DDU556G1099 Dioscorea dumetorum HOM05M005128 ORTHO05M006485 1.4e-25 119.4 106 58.5
SEGI_17074 Sequoiadendron giganteum HOM05M005128 ORTHO05M006485 7.7e-24 113.6 92 62.0
GWHGAZTO081416 Oryza alta HOM05M005128 ORTHO05M006485 1.1e-22 109.8 114 56.1
HPP92_026650 Vanilla planifolia HOM05M005128 ORTHO05M006485 6.1e-21 104.0 93 54.8
HPP92_015711 Vanilla planifolia HOM05M005128 ORTHO05M006485 1.8e-20 102.4 118 48.3
Sspon.04G0017340-1A Saccharum spontaneum HOM05M005128 ORTHO05M006485 2.0e-19 99.0 67 70.1
Misin16G151900 Miscanthus sinensis HOM05M005128 ORTHO05M006485 2.6e-19 98.6 131 46.6
Misin17G159700 Miscanthus sinensis HOM05M005128 ORTHO05M006485 9.8e-19 96.7 76 64.5
Mapoly0057s0080 Marchantia polymorpha HOM05M005128 ORTHO05M006485 6.3e-18 94.0 96 46.9
Pp3c13_4420 Physcomitrium patens HOM05M005128 ORTHO05M006485 8.3e-18 93.6 92 50.0
SMO145G0237 Selaginella moellendorffii HOM05M005128 ORTHO05M006485 7.0e-17 90.5 101 48.5
AagrBONN_evm.TU.Sc2ySwM_344.5166 Anthoceros agrestis HOM05M005128 ORTHO05M006485 2.0e-16 89.0 96 47.9
Sobic.009G156400 Sorghum bicolor HOM05M005128 ORTHO05M006485 5.9e-16 87.4 76 63.2
Pp3c9_6720 Physcomitrium patens HOM05M005128 ORTHO05M006485 1.2e-13 79.7 105 37.1
CBR_g2823 Chara braunii HOM05M005128 ORTHO05M006485 1.5e-11 72.8 100 42.0
MCO15G211 Micromonas commoda HOM05M005128 ORTHO05M006485 1.5e-11 72.8 90 43.3
Dexi3A01G0008040 Digitaria exilis HOM05M005128 ORTHO05M006485 1.6e-08 62.8 50 58.0
Zjn_sc00016.1.g06510.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M005128 ORTHO05M006485 1.7e-07 59.3 67 43.3
PRCOL_00002543 Prasinoderma coloniale HOM05M005128 ORTHO05M006485 7.3e-06 53.9 97 36.1


User provided reference genes

Program Settings