Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g042430.2 Solanum lycopersicum HOM05M005862 ORTHO05M007238 1.7e-224 781.6 394 100.0
Potri.019G072900 Populus trichocarpa HOM05M005862 ORTHO05M007238 4.0e-157 557.8 351 77.8
Potri.013G099900 Populus trichocarpa HOM05M005862 ORTHO05M007238 1.8e-152 542.3 347 76.1
Glyma.11G014000 Glycine max HOM05M005862 ORTHO05M007238 2.1e-150 535.4 350 74.3
MBI03_g28420_MAGBIO Magnolia biondii HOM05M005862 ORTHO05M007238 6.9e-149 530.4 332 78.0
Ma03_g19800 Musa acuminata HOM05M005862 ORTHO05M007238 1.9e-146 522.3 353 72.5
HPP92_005641 Vanilla planifolia HOM05M005862 ORTHO05M007238 2.5e-146 521.9 344 74.4
AT4G10050 Arabidopsis thaliana HOM05M005862 ORTHO05M007238 3.5e-145 518.1 343 73.5
evm.TU.AsparagusV1_09.375.V1.1 Asparagus officinalis HOM05M005862 ORTHO05M007238 3.0e-144 515.0 341 75.4
Sspon.05G0010760-1A Saccharum spontaneum HOM05M005862 ORTHO05M007238 1.7e-139 499.2 340 72.9
TraesCS2B03G0854700 Triticum aestivum HOM05M005862 ORTHO05M007238 2.2e-139 498.8 338 73.1
TRIDC2BG047860 Triticum dicoccoides HOM05M005862 ORTHO05M007238 2.2e-139 498.8 338 73.1
TraesCS2A03G0772200 Triticum aestivum HOM05M005862 ORTHO05M007238 2.9e-139 498.4 338 72.8
Sspon.05G0010760-4D Saccharum spontaneum HOM05M005862 ORTHO05M007238 6.5e-139 497.3 340 72.9
OsKitaake04g141600 Oryza sativa Kitaake HOM05M005862 ORTHO05M007238 1.1e-138 496.5 337 72.7
OsR498G0408639300.01 Oryza sativa ssp. indica HOM05M005862 ORTHO05M007238 1.1e-138 496.5 337 72.7
Os04g0443500 Oryza sativa ssp. japonica HOM05M005862 ORTHO05M007238 1.1e-138 496.5 337 72.7
Zosma02g24820 Zostera marina HOM05M005862 ORTHO05M007238 1.1e-138 496.5 332 72.0
Misin12G091200 Miscanthus sinensis HOM05M005862 ORTHO05M007238 1.4e-138 496.1 340 72.9
TraesCS2D03G0711900 Triticum aestivum HOM05M005862 ORTHO05M007238 1.9e-138 495.7 338 72.5
TRITD2Bv1G155660 Triticum turgidum HOM05M005862 ORTHO05M007238 1.9e-138 495.7 339 72.9
Sspon.05G0010760-3C Saccharum spontaneum HOM05M005862 ORTHO05M007238 2.5e-138 495.4 340 72.4
V3.Lp_chr2_0G16378 Lolium perenne HOM05M005862 ORTHO05M007238 3.2e-138 495.0 339 72.6
Pahal.7G161800 Panicum hallii HOM05M005862 ORTHO05M007238 5.5e-138 494.2 339 72.3
OB04G20990 Oryza brachyantha HOM05M005862 ORTHO05M007238 7.2e-138 493.8 340 72.4
GWHGAORA022859 Cenchrus purpureus HOM05M005862 ORTHO05M007238 1.6e-137 492.7 341 72.1
Sobic.006G091000 Sorghum bicolor HOM05M005862 ORTHO05M007238 1.6e-137 492.7 339 72.0
GWHGAZTO079420 Oryza alta HOM05M005862 ORTHO05M007238 2.1e-137 492.3 337 72.1
Seita.7G109200 Setaria italica HOM05M005862 ORTHO05M007238 6.1e-137 490.7 340 72.1
Sevir.7G117100 Setaria viridis HOM05M005862 ORTHO05M007238 7.9e-137 490.3 340 71.8
Misin11G087800 Miscanthus sinensis HOM05M005862 ORTHO05M007238 2.3e-136 488.8 355 69.6
Dexi7B01G0008310 Digitaria exilis HOM05M005862 ORTHO05M007238 3.0e-136 488.4 339 72.0
Sspon.05G0010760-2B Saccharum spontaneum HOM05M005862 ORTHO05M007238 6.7e-136 487.3 336 72.3
Bradi5g11300 Brachypodium distachyon HOM05M005862 ORTHO05M007238 8.7e-136 486.9 343 70.0
GWHGAORA061766 Cenchrus purpureus HOM05M005862 ORTHO05M007238 1.1e-135 486.5 343 70.6
ATR1089G027 Amborella trichopoda HOM05M005862 ORTHO05M007238 1.9e-135 485.7 341 69.5
GWHGASIY009007 Secale cereale HOM05M005862 ORTHO05M007238 2.5e-135 485.3 338 71.0
Horvu_MOREX_2H01G462300 Hordeum vulgare HOM05M005862 ORTHO05M007238 3.3e-135 485.0 338 71.0
CALSI_Maker00003654 Calamus simplicifolius HOM05M005862 ORTHO05M007238 7.4e-135 483.8 296 77.4
Spipo13G0018000 Spirodela polyrhiza HOM05M005862 ORTHO05M007238 1.3e-134 483.0 304 75.3
Zm00001eb082080 Zea mays B73 HOM05M005862 ORTHO05M007238 4.8e-134 481.1 345 69.6
Ot_Chr6_g20808 Oropetium thomaeum HOM05M005862 ORTHO05M007238 1.4e-133 479.6 309 74.1
AET2Gv20703900 Aegilops tauschii HOM05M005862 ORTHO05M007238 5.0e-131 471.1 294 76.2
EJB05_37701 Eragrostis curvula HOM05M005862 ORTHO05M007238 2.5e-130 468.8 367 65.7
EJB05_56134 Eragrostis curvula HOM05M005862 ORTHO05M007238 3.2e-130 468.4 367 65.4
Pp3c6_4660 Physcomitrium patens HOM05M005862 ORTHO05M007238 3.9e-128 461.5 319 68.7
AagrBONN_evm.TU.Sc2ySwM_117.506 Anthoceros agrestis HOM05M005862 ORTHO05M007238 1.8e-125 452.6 318 67.3
Mapoly0007s0278 Marchantia polymorpha HOM05M005862 ORTHO05M007238 1.5e-124 449.5 337 65.9
TRITD2Av1G189800 Triticum turgidum HOM05M005862 ORTHO05M007238 1.4e-120 436.4 337 65.6
Zm00007a00027946 Zea mays B104 HOM05M005862 ORTHO05M007238 1.7e-118 429.5 340 64.4
Dexi7A01G0007360 Digitaria exilis HOM05M005862 ORTHO05M007238 1.1e-117 426.8 355 63.4
SMO356G0681 Selaginella moellendorffii HOM05M005862 ORTHO05M007238 3.5e-116 421.8 312 65.7
Aco013569 Ananas comosus HOM05M005862 ORTHO05M007238 1.0e-112 410.2 359 60.7
GWHGAZTO029738 Oryza alta HOM05M005862 ORTHO05M007238 1.0e-104 383.6 241 76.8
TRIDC2AG045220 Triticum dicoccoides HOM05M005862 ORTHO05M007238 7.7e-92 340.9 221 73.3
DDU739G0564 Dioscorea dumetorum HOM05M005862 ORTHO05M007238 3.0e-83 312.4 272 60.7
p5.00_sc00045_p0010 Elaeis guineensis HOM05M005862 ORTHO05M007238 5.4e-77 291.6 207 72.5
Zjn_sc00006.1.g02680.1.es.mkhc Zoysia japonica ssp. nagirizaki HOM05M005862 ORTHO05M007238 3.1e-72 275.8 188 70.7
CBR_g45928 Chara braunii HOM05M005862 ORTHO05M007238 4.4e-71 271.9 220 59.5
Cre12.g521250 Chlamydomonas reinhardtii HOM05M005862 ORTHO05M007238 6.0e-68 261.5 410 38.3
HPP92_005619 Vanilla planifolia HOM05M005862 ORTHO05M007238 1.4e-56 223.8 132 76.5
Glyma.01G230800 Glycine max HOM05M005862 ORTHO05M007238 1.3e-51 207.2 127 78.7
PRCOL_00002994 Prasinoderma coloniale HOM05M005862 ORTHO05M007238 1.2e-47 194.1 345 35.7
MCO04G089 Micromonas commoda HOM05M005862 ORTHO05M007238 2.6e-47 193.0 323 37.8
SEGI_15073 Sequoiadendron giganteum HOM05M005862 ORTHO05M007238 2.1e-44 183.3 126 71.4
HPP92_005618 Vanilla planifolia HOM05M005862 ORTHO05M007238 2.6e-39 166.4 97 78.4
SMO272G0012 Selaginella moellendorffii HOM05M005862 ORTHO05M007238 1.2e-36 157.5 104 70.2
CBR_g27970 Chara braunii HOM05M005862 ORTHO05M007238 3.7e-25 119.4 83 67.5
Zjn_sc00058.1.g01940.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M005862 ORTHO05M007238 3.8e-22 109.4 341 29.9
evm.TU.AsparagusV1_07.2350.V1.1 Asparagus officinalis HOM05M005862 ORTHO05M007238 5.0e-22 109.0 64 79.7
SEGI_06082 Sequoiadendron giganteum HOM05M005862 ORTHO05M007238 9.7e-18 94.7 76 60.5
p5.00_sc00034_p0057 Elaeis guineensis HOM05M005862 ORTHO05M007238 1.7e-14 84.0 147 34.0
SEGI_00088 Sequoiadendron giganteum HOM05M005862 ORTHO05M007238 1.1e-10 71.2 44 70.5
evm.TU.AsparagusV1_10.1535.V1.1 Asparagus officinalis HOM05M005862 ORTHO05M007238 7.4e-10 68.6 40 82.5
OsKitaake07g226800 Oryza sativa Kitaake HOM05M000467 ORTHO05M001820 2.2e-06 57.0 262 23.3
Os07g0612400 Oryza sativa ssp. japonica HOM05M000467 ORTHO05M001820 2.2e-06 57.0 262 23.3


User provided reference genes

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