Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g042420.2 Solanum lycopersicum HOM05M002047 ORTHO05M002290 2.9e-60 234.2 113 100.0
Solyc01g103220.3 Solanum lycopersicum HOM05M002047 ORTHO05M002290 3.4e-56 220.7 113 93.8
EJB05_35560 Eragrostis curvula HOM05M002047 ORTHO05M002290 2.2e-55 218.0 112 92.9
EJB05_56370 Eragrostis curvula HOM05M002047 ORTHO05M002290 2.2e-55 218.0 112 92.9
evm.TU.AsparagusV1_Unassigned.1009.V1.1 Asparagus officinalis HOM05M002047 ORTHO05M002290 3.7e-55 217.2 113 91.2
Dexi3A01G0023560 Digitaria exilis HOM05M002047 ORTHO05M002290 3.7e-55 217.2 113 92.9
Dexi3B01G0024290 Digitaria exilis HOM05M002047 ORTHO05M002290 3.7e-55 217.2 113 92.9
Sobic.009G141800 Sorghum bicolor HOM05M002047 ORTHO05M002290 3.7e-55 217.2 113 92.9
CALSI_Maker00003664 Calamus simplicifolius HOM05M002047 ORTHO05M002290 8.3e-55 216.1 112 91.1
GWHGAORA037988 Cenchrus purpureus HOM05M002047 ORTHO05M002290 8.3e-55 216.1 113 92.0
MBI07_g30178_MAGBIO Magnolia biondii HOM05M002047 ORTHO05M002290 8.3e-55 216.1 112 91.1
Zjn_sc00025.1.g02160.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M002047 ORTHO05M002290 8.3e-55 216.1 112 92.0
Aco011335 Ananas comosus HOM05M002047 ORTHO05M002290 1.1e-54 215.7 112 92.0
Misin17G146100 Miscanthus sinensis HOM05M002047 ORTHO05M002290 1.1e-54 215.7 113 92.0
Ot_Chr5_g05061 Oropetium thomaeum HOM05M002047 ORTHO05M002290 1.1e-54 215.7 112 92.0
Pahal.3G275300 Panicum hallii HOM05M002047 ORTHO05M002290 1.1e-54 215.7 113 92.0
Seita.3G237400 Setaria italica HOM05M002047 ORTHO05M002290 1.1e-54 215.7 113 92.0
Sevir.3G242900 Setaria viridis HOM05M002047 ORTHO05M002290 1.1e-54 215.7 113 92.0
Zm00001eb349110 Zea mays B73 HOM05M002047 ORTHO05M002290 1.4e-54 215.3 113 92.0
Zm00007a00027987 Zea mays B104 HOM05M002047 ORTHO05M002290 1.4e-54 215.3 113 92.0
GWHGAORA030686 Cenchrus purpureus HOM05M002047 ORTHO05M002290 2.4e-54 214.5 113 91.2
p5.00_sc00263_p0029 Elaeis guineensis HOM05M002047 ORTHO05M002290 2.4e-54 214.5 112 92.0
Misin05G364200 Miscanthus sinensis HOM05M002047 ORTHO05M002290 2.4e-54 214.5 113 91.2
Seita.5G405700 Setaria italica HOM05M002047 ORTHO05M002290 2.4e-54 214.5 113 91.2
Sevir.5G411400 Setaria viridis HOM05M002047 ORTHO05M002290 2.4e-54 214.5 113 91.2
Asa6G03661 Allium sativum HOM05M002047 ORTHO05M002290 4.1e-54 213.8 113 90.3
Asa6G03664 Allium sativum HOM05M002047 ORTHO05M002290 4.1e-54 213.8 113 90.3
OB05G24780 Oryza brachyantha HOM05M002047 ORTHO05M002290 4.1e-54 213.8 113 90.3
OsKitaake05g165200 Oryza sativa Kitaake HOM05M002047 ORTHO05M002290 4.1e-54 213.8 113 90.3
OsR498G0510863900.01 Oryza sativa ssp. indica HOM05M002047 ORTHO05M002290 4.1e-54 213.8 113 90.3
Os05g0420600 Oryza sativa ssp. japonica HOM05M002047 ORTHO05M002290 4.1e-54 213.8 113 90.3
PH02Gene15511 Phyllostachys edulis HOM05M002047 ORTHO05M002290 4.1e-54 213.8 112 90.2
HPP92_004647 Vanilla planifolia HOM05M002047 ORTHO05M002290 4.1e-54 213.8 113 91.2
AET3Gv20905000 Aegilops tauschii HOM05M002047 ORTHO05M002290 5.4e-54 213.4 113 91.2
Asa7G06745 Allium sativum HOM05M002047 ORTHO05M002290 5.4e-54 213.4 113 90.3
TraesCS3B03G1083500 Triticum aestivum HOM05M002047 ORTHO05M002290 5.4e-54 213.4 113 91.2
TraesCS3D03G0882500 Triticum aestivum HOM05M002047 ORTHO05M002290 5.4e-54 213.4 113 91.2
TRIDC3BG064700 Triticum dicoccoides HOM05M002047 ORTHO05M002290 5.4e-54 213.4 113 91.2
TRITD3Bv1G224140 Triticum turgidum HOM05M002047 ORTHO05M002290 5.4e-54 213.4 113 91.2
GWHGAORA045690 Cenchrus purpureus HOM05M002047 ORTHO05M002290 7.0e-54 213.0 113 90.3
DDU450G0002 Dioscorea dumetorum HOM05M002047 ORTHO05M002290 7.0e-54 213.0 112 90.2
DDU739G0031 Dioscorea dumetorum HOM05M002047 ORTHO05M002290 7.0e-54 213.0 112 90.2
p5.00_sc00272_p0010 Elaeis guineensis HOM05M002047 ORTHO05M002290 7.0e-54 213.0 112 91.1
GWHGAZTO083806 Oryza alta HOM05M002047 ORTHO05M002290 7.0e-54 213.0 113 90.3
Potri.019G076001 Populus trichocarpa HOM05M002047 ORTHO05M002290 7.0e-54 213.0 112 89.3
Zm00001eb145520 Zea mays B73 HOM05M002047 ORTHO05M002290 7.0e-54 213.0 113 90.3
Zm00007a00027827 Zea mays B104 HOM05M002047 ORTHO05M002290 7.0e-54 213.0 113 90.3
Aco018024 Ananas comosus HOM05M002047 ORTHO05M002290 9.1e-54 212.6 111 91.0
Sspon.03G0001790-2D Saccharum spontaneum HOM05M002047 ORTHO05M002290 9.1e-54 212.6 113 90.3
HPP92_011447 Vanilla planifolia HOM05M002047 ORTHO05M002290 9.1e-54 212.6 113 90.3
Zm00007a00013451 Zea mays B104 HOM05M002047 ORTHO05M002290 9.1e-54 212.6 113 90.3
Bradi2g57160 Brachypodium distachyon HOM05M002047 ORTHO05M002290 1.2e-53 212.2 113 90.3
Sobic.003G380300 Sorghum bicolor HOM05M002047 ORTHO05M002290 1.2e-53 212.2 113 90.3
CALSI_Maker00000148 Calamus simplicifolius HOM05M002047 ORTHO05M002290 1.6e-53 211.8 112 89.3
DDU556G0163 Dioscorea dumetorum HOM05M002047 ORTHO05M002290 1.6e-53 211.8 112 89.3
SEGI_32362 Sequoiadendron giganteum HOM05M002047 ORTHO05M002290 1.6e-53 211.8 113 88.5
TRIDC3AG057640 Triticum dicoccoides HOM05M002047 ORTHO05M002290 1.6e-53 211.8 113 90.3
TRITD3Av1G234770 Triticum turgidum HOM05M002047 ORTHO05M002290 1.6e-53 211.8 113 90.3
Potri.013G101601 Populus trichocarpa HOM05M002047 ORTHO05M002290 2.0e-53 211.5 112 89.3
CALSI_Maker00040445 Calamus simplicifolius HOM05M002047 ORTHO05M002290 2.7e-53 211.1 112 89.3
p5.00_sc00045_p0009 Elaeis guineensis HOM05M002047 ORTHO05M002290 2.7e-53 211.1 112 89.3
V3.Lp_chr3_0G21380 Lolium perenne HOM05M002047 ORTHO05M002290 2.7e-53 211.1 113 90.3
Ma06_g19810 Musa acuminata HOM05M002047 ORTHO05M002290 2.7e-53 211.1 113 89.4
AT4G10040 Arabidopsis thaliana HOM05M002047 ORTHO05M002290 3.5e-53 210.7 113 89.4
MBI03_g28422_MAGBIO Magnolia biondii HOM05M002047 ORTHO05M002290 3.5e-53 210.7 112 89.3
SEGI_19862 Sequoiadendron giganteum HOM05M002047 ORTHO05M002290 3.5e-53 210.7 113 88.5
Bradi2g25030 Brachypodium distachyon HOM05M002047 ORTHO05M002290 4.5e-53 210.3 112 88.4
Glyma.09G246700 Glycine max HOM05M002047 ORTHO05M002290 4.5e-53 210.3 113 89.4
Ma05_g01320 Musa acuminata HOM05M002047 ORTHO05M002290 4.5e-53 210.3 113 89.4
Spipo4G0077400 Spirodela polyrhiza HOM05M002047 ORTHO05M002290 4.5e-53 210.3 113 88.5
TraesCS3A03G0948700 Triticum aestivum HOM05M002047 ORTHO05M002290 4.5e-53 210.3 113 89.4
Glyma.18G246300 Glycine max HOM05M002047 ORTHO05M002290 5.9e-53 209.9 113 89.4
Horvu_MOREX_3H01G564100 Hordeum vulgare HOM05M002047 ORTHO05M002290 5.9e-53 209.9 113 89.4
Ot_Chr3_g13018 Oropetium thomaeum HOM05M002047 ORTHO05M002290 5.9e-53 209.9 113 89.4
Asa2G02736 Allium sativum HOM05M002047 ORTHO05M002290 7.7e-53 209.5 113 88.5
MBI06_g21945_MAGBIO Magnolia biondii HOM05M002047 ORTHO05M002290 7.7e-53 209.5 112 88.4
AET2Gv21310600 Aegilops tauschii HOM05M002047 ORTHO05M002290 1.0e-52 209.1 113 87.6
TraesCS2B03G1577000 Triticum aestivum HOM05M002047 ORTHO05M002290 1.0e-52 209.1 113 87.6
TraesCS2D03G1342300 Triticum aestivum HOM05M002047 ORTHO05M002290 1.0e-52 209.1 113 87.6
ATR1089G107 Amborella trichopoda HOM05M002047 ORTHO05M002290 1.3e-52 208.8 112 87.5
Glyma.01G230900 Glycine max HOM05M002047 ORTHO05M002290 1.3e-52 208.8 112 87.5
evm.TU.AsparagusV1_09.376.V1.1 Asparagus officinalis HOM05M002047 ORTHO05M002290 2.2e-52 208.0 112 87.5
Ma07_g24990 Musa acuminata HOM05M002047 ORTHO05M002290 2.2e-52 208.0 113 87.6
AT1G22840 Arabidopsis thaliana HOM05M002047 ORTHO05M002290 2.9e-52 207.6 112 88.4
Glyma.11G014100 Glycine max HOM05M002047 ORTHO05M002290 2.9e-52 207.6 112 86.6
Ma11_g17880 Musa acuminata HOM05M002047 ORTHO05M002290 2.9e-52 207.6 112 87.5
GWHGASIY017054 Secale cereale HOM05M002047 ORTHO05M002290 3.8e-52 207.2 113 88.5
Zosma02g04070 Zostera marina HOM05M002047 ORTHO05M002290 3.8e-52 207.2 112 86.6
Potri.019G076101 Populus trichocarpa HOM05M002047 ORTHO05M002290 5.0e-52 206.8 112 87.5
EJB05_18186 Eragrostis curvula HOM05M002047 ORTHO05M002290 6.5e-52 206.5 123 83.7
EJB05_18187 Eragrostis curvula HOM05M002047 ORTHO05M002290 6.5e-52 206.5 123 83.7
CDE05G1556 Ceratophyllum demersum HOM05M002047 ORTHO05M002290 8.5e-52 206.1 113 86.7
Horvu_MOREX_2H01G797000 Hordeum vulgare HOM05M002047 ORTHO05M002290 8.5e-52 206.1 113 86.7
V3.Lp_chr7_0.1G3962 Lolium perenne HOM05M002047 ORTHO05M002290 8.5e-52 206.1 113 85.0
AET1Gv20638300 Aegilops tauschii HOM05M002047 ORTHO05M002290 1.1e-51 205.7 112 87.5
Horvu_MOREX_1H01G404100 Hordeum vulgare HOM05M002047 ORTHO05M002290 1.1e-51 205.7 112 87.5
GWHGASIY003464 Secale cereale HOM05M002047 ORTHO05M002290 1.1e-51 205.7 112 87.5
TraesCS1A03G0671500 Triticum aestivum HOM05M002047 ORTHO05M002290 1.1e-51 205.7 112 87.5
TraesCS1D03G0634900 Triticum aestivum HOM05M002047 ORTHO05M002290 1.1e-51 205.7 112 87.5
TRIDC1AG039340 Triticum dicoccoides HOM05M002047 ORTHO05M002290 1.1e-51 205.7 112 87.5
TRITD1Av1G166520 Triticum turgidum HOM05M002047 ORTHO05M002290 1.1e-51 205.7 112 87.5
CDE05G3035 Ceratophyllum demersum HOM05M002047 ORTHO05M002290 1.9e-51 204.9 113 85.8
Mapoly0139s0022 Marchantia polymorpha HOM05M002047 ORTHO05M002290 4.2e-51 203.8 108 88.9
CDE02G0194 Ceratophyllum demersum HOM05M002047 ORTHO05M002290 5.5e-51 203.4 113 85.0
Pp3c22_8430 Physcomitrium patens HOM05M002047 ORTHO05M002290 2.1e-50 201.4 112 84.8
Seita.3G000400 Setaria italica HOM05M002047 ORTHO05M002290 2.7e-50 201.1 113 83.2
Sevir.3G001000 Setaria viridis HOM05M002047 ORTHO05M002290 2.7e-50 201.1 113 83.2
Mapoly0082s0002 Marchantia polymorpha HOM05M002047 ORTHO05M002290 3.6e-50 200.7 108 88.0
GWHGAORA003020 Cenchrus purpureus HOM05M002047 ORTHO05M002290 6.1e-50 199.9 104 91.3
PH02Gene46328 Phyllostachys edulis HOM05M002047 ORTHO05M002290 1.0e-49 199.1 113 83.2
OB04G37950 Oryza brachyantha HOM05M002047 ORTHO05M002290 1.8e-49 198.4 113 82.3
OsKitaake04g323200 Oryza sativa Kitaake HOM05M002047 ORTHO05M002290 1.8e-49 198.4 113 82.3
Pahal.7G352200 Panicum hallii HOM05M002047 ORTHO05M002290 1.8e-49 198.4 112 82.1
GWHGAZTO046274 Oryza alta HOM05M002047 ORTHO05M002290 2.3e-49 198.0 113 82.3
Pp3c7_26740 Physcomitrium patens HOM05M002047 ORTHO05M002290 3.0e-49 197.6 112 83.0
GWHGAORA020819 Cenchrus purpureus HOM05M002047 ORTHO05M002290 4.0e-49 197.2 113 81.4
Ot_Chr1_g24938 Oropetium thomaeum HOM05M002047 ORTHO05M002290 5.2e-49 196.8 112 81.2
OsR498G0409549500.01 Oryza sativa ssp. indica HOM05M002047 ORTHO05M002290 6.8e-49 196.4 113 81.4
Zm00001eb288340 Zea mays B73 HOM05M002047 ORTHO05M002290 6.8e-49 196.4 144 70.8
Zm00001eb434570 Zea mays B73 HOM05M002047 ORTHO05M002290 8.8e-49 196.1 113 80.5
Zm00007a00006155 Zea mays B104 HOM05M002047 ORTHO05M002290 8.8e-49 196.1 113 80.5
GWHGAORA063757 Cenchrus purpureus HOM05M002047 ORTHO05M002290 1.2e-48 195.7 113 80.5
Zosma03g36520 Zostera marina HOM05M002047 ORTHO05M002290 1.2e-48 195.7 112 83.0
Sobic.006G282000 Sorghum bicolor HOM05M002047 ORTHO05M002290 1.5e-48 195.3 111 81.1
Pp3c19_2800 Physcomitrium patens HOM05M002047 ORTHO05M002290 3.4e-48 194.1 112 81.2
TRIDC1BG044720 Triticum dicoccoides HOM05M002047 ORTHO05M002290 4.4e-48 193.7 113 84.1
MisinT001700 Miscanthus sinensis HOM05M002047 ORTHO05M002290 9.8e-48 192.6 111 81.1
MisinT002800 Miscanthus sinensis HOM05M002047 ORTHO05M002290 9.8e-48 192.6 111 81.1
CDE08G0235 Ceratophyllum demersum HOM05M002047 ORTHO05M002290 2.2e-47 191.4 113 78.8
Pp3c22_18790 Physcomitrium patens HOM05M002047 ORTHO05M002290 3.7e-47 190.7 111 81.1
AagrBONN_evm.TU.Sc2ySwM_228.5047 Anthoceros agrestis HOM05M002047 ORTHO05M002290 4.9e-47 190.3 110 80.9
PH02Gene07891 Phyllostachys edulis HOM05M002047 ORTHO05M002290 8.3e-47 189.5 108 84.3
CBR_g19557 Chara braunii HOM05M002047 ORTHO05M002290 1.4e-46 188.7 113 78.8
MCO03G210 Micromonas commoda HOM05M002047 ORTHO05M002290 3.1e-46 187.6 110 80.0
Cre12.g522600 Chlamydomonas reinhardtii HOM05M002047 ORTHO05M002290 5.4e-46 186.8 113 77.9
SMO116G0350 Selaginella moellendorffii HOM05M002047 ORTHO05M002290 7.0e-46 186.4 108 79.6
PRCOL_00001756 Prasinoderma coloniale HOM05M002047 ORTHO05M002290 1.6e-45 185.3 113 77.9
Zjn_sc00023.1.g07440.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M002047 ORTHO05M002290 2.0e-45 184.9 106 80.2
MBI15_g05554_MAGBIO Magnolia biondii HOM05M002047 ORTHO05M002290 1.0e-44 182.6 112 76.8
CBR_g23167 Chara braunii HOM05M000008 ORTHO05M000001 5.0e-44 180.3 111 73.9
SMO114G0089 Selaginella moellendorffii HOM05M002047 ORTHO05M002290 3.3e-43 177.6 110 71.8
AagrBONN_evm.TU.Sc2ySwM_117.1046 Anthoceros agrestis HOM05M002047 ORTHO05M002290 5.6e-43 176.8 111 73.9
Dexi5A01G0034680 Digitaria exilis HOM05M002047 ORTHO05M002290 4.7e-42 173.7 113 79.6
Dexi5B01G0034740 Digitaria exilis HOM05M002047 ORTHO05M002290 1.4e-41 172.2 113 78.8
Ma05_g18530 Musa acuminata HOM05M002047 ORTHO05M002290 4.0e-41 170.6 111 73.0
CDE05G0182 Ceratophyllum demersum HOM05M002047 ORTHO05M002290 1.5e-40 168.7 157 58.6
GWHGAZTO006316 Oryza alta HOM05M002047 ORTHO05M002290 1.5e-40 168.7 113 72.6
Zjn_sc00012.1.g04510.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M002047 ORTHO05M288827 7.5e-40 166.4 111 76.6
GWHGAZTO058649 Oryza alta HOM05M002047 ORTHO05M002290 1.7e-39 165.2 113 71.7
OsKitaake01g425800 Oryza sativa Kitaake HOM05M002047 ORTHO05M002290 8.3e-39 162.9 113 69.9
Os01g0885000 Oryza sativa ssp. japonica HOM05M002047 ORTHO05M002290 8.3e-39 162.9 113 69.9
OsR498G0102470900.01 Oryza sativa ssp. indica HOM05M002047 ORTHO05M002290 4.6e-37 157.1 109 68.8
Zm00001eb359040 Zea mays B73 HOM05M002047 ORTHO05M037810 3.0e-36 154.5 88 78.4
Zm00007a00003531 Zea mays B104 HOM05M002047 ORTHO05M002290 5.0e-36 153.7 88 78.4
Zm00007a00018389 Zea mays B104 HOM05M002047 ORTHO05M037810 2.5e-35 151.4 88 77.3
GWHGAZTO032300 Oryza alta HOM05M002047 ORTHO05M002290 7.3e-35 149.8 89 82.0
Misin16G144000 Miscanthus sinensis HOM05M002047 ORTHO05M002290 3.6e-34 147.5 76 93.4
GWHGAZTO034900 Oryza alta HOM05M002047 ORTHO05M002290 1.8e-33 145.2 76 90.8
PH02Gene40140 Phyllostachys edulis HOM05M002047 ORTHO05M002290 5.2e-33 143.7 78 87.2
Asa6G06134 Allium sativum HOM05M002047 ORTHO05M002290 1.2e-32 142.5 82 82.9
Os04g0693050 Oryza sativa ssp. japonica HOM05M002047 ORTHO05M002290 1.5e-32 142.1 82 79.3
Zjn_sc00255.1.g00040.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M002047 ORTHO05M002290 8.3e-31 136.3 79 79.7
GWHGAORA003031 Cenchrus purpureus HOM05M002047 ORTHO05M002290 2.4e-30 134.8 113 67.3
OB01G48420 Oryza brachyantha HOM05M002047 ORTHO05M188656 2.4e-30 134.8 189 42.9
SMO118G0393 Selaginella moellendorffii HOM05M002047 ORTHO05M002290 1.6e-29 132.1 110 57.3
Zm00007a00042501 Zea mays B104 HOM05M002047 ORTHO05M002290 2.7e-29 131.3 79 75.9
evm.TU.AsparagusV1_04.2790.V1.1 Asparagus officinalis HOM05M002047 ORTHO05M071749 1.3e-23 112.5 102 53.9
Sspon.03G0001790-1A Saccharum spontaneum HOM05M002047 ORTHO05M002290 4.6e-21 104.0 52 92.3
Pahal.5G065800 Panicum hallii HOM05M002047 ORTHO05M033197 2.8e-18 94.7 50 90.0
Asa6G02161 Allium sativum HOM05M000001 ORTHO05M009604 7.6e-16 86.7 102 44.1
Zm00001eb278730 Zea mays B73 HOM05M002047 ORTHO05M037292 1.9e-14 82.0 46 78.3
Zm00007a00024109 Zea mays B104 HOM05M002047 ORTHO05M037292 1.9e-14 82.0 46 78.3
Zm00001eb114720 Zea mays B73 HOM05M002047 ORTHO05M033197 3.2e-14 81.3 44 81.8
Misin18G170600 Miscanthus sinensis HOM05M002047 ORTHO05M002290 7.8e-13 76.6 46 78.3
GWHGAZTO034899 Oryza alta HOM05M003757 ORTHO05M004610 2.8e-10 68.2 39 79.5
Zm00007a00023882 Zea mays B104 HOM05M000157 ORTHO05M010404 6.8e-09 63.5 31 93.5
Glyma.14G173200 Glycine max HOM05M002047 ORTHO05M002290 2.0e-08 62.0 42 66.7
Asa0G01449 Allium sativum HOM05M002047 ORTHO05M002290 2.9e-07 58.2 37 75.7
Ma02_g02720 Musa acuminata HOM05M002047 ORTHO05M148074 6.4e-07 57.0 30 83.3


User provided reference genes

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