Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g021190.2 Solanum lycopersicum HOM05M001634 ORTHO05M001555 1.4e-111 405.6 212 100.0
Potri.001G342933 Populus trichocarpa HOM05M001634 ORTHO05M001555 1.9e-84 315.5 275 65.8
ATCG01010 Arabidopsis thaliana HOM05M001634 ORTHO05M001555 7.1e-84 313.5 273 65.6
Aco024831 Ananas comosus HOM05M001634 ORTHO05M001555 3.3e-81 304.7 273 65.2
OsKitaake10g165835 Oryza sativa Kitaake HOM05M001634 ORTHO05M001555 5.8e-78 293.9 273 61.9
OsR498G0022237600.01 Oryza sativa ssp. indica HOM05M001634 ORTHO05M001555 5.8e-78 293.9 273 61.9
AET3Gv21147800 Aegilops tauschii HOM05M001634 ORTHO05M001555 1.3e-77 292.7 273 61.9
V3.Lp_chr7_0.1G8386 Lolium perenne HOM05M001634 ORTHO05M001555 2.2e-77 292.0 273 61.9
Zm00007a00042567 Zea mays B104 HOM05M001634 ORTHO05M001555 2.9e-77 291.6 273 61.5
Zm00007a00022333 Zea mays B104 HOM05M001634 ORTHO05M001555 6.5e-77 290.4 273 61.5
OsKitaake10g165816 Oryza sativa Kitaake HOM05M001634 ORTHO05M001555 7.1e-76 287.0 273 60.8
GWHGASIY001718 Secale cereale HOM05M001634 ORTHO05M001555 1.3e-74 282.7 263 62.7
Ot_Chr7_gn38087 Oropetium thomaeum HOM05M001634 ORTHO05M001555 3.0e-66 255.0 248 60.5
Ot_Chr7_gn38088 Oropetium thomaeum HOM05M001634 ORTHO05M001555 3.0e-66 255.0 248 60.5
Ot_Un136_gn40113 Oropetium thomaeum HOM05M001634 ORTHO05M001555 3.0e-66 255.0 248 60.5
Ot_Un168_gn40557 Oropetium thomaeum HOM05M001634 ORTHO05M001555 3.0e-66 255.0 248 60.5
Ot_Un169_gn40626 Oropetium thomaeum HOM05M001634 ORTHO05M001555 3.0e-66 255.0 248 60.5
Ot_Un171_gn40675 Oropetium thomaeum HOM05M001634 ORTHO05M001555 3.0e-66 255.0 248 60.5
Ot_Un3_gn40882 Oropetium thomaeum HOM05M001634 ORTHO05M001555 3.0e-66 255.0 248 60.5
Ot_Un9_gn41192 Oropetium thomaeum HOM05M001634 ORTHO05M001555 3.0e-66 255.0 248 60.5
Asa8G04287 Allium sativum HOM05M001634 ORTHO05M001555 1.0e-58 229.9 232 58.6
Zm00007a00050354 Zea mays B104 HOM05M001634 ORTHO05M001555 4.8e-56 221.1 267 52.1
TRIDC5BG079420 Triticum dicoccoides HOM05M001634 ORTHO05M001555 9.1e-55 216.9 232 56.9
AET2Gv21089900 Aegilops tauschii HOM05M001634 ORTHO05M001555 5.2e-50 201.1 218 56.0
GWHGAORA041959 Cenchrus purpureus HOM05M001634 ORTHO05M001555 2.8e-48 195.3 258 50.8
OsKitaake12g159400 Oryza sativa Kitaake HOM05M001634 ORTHO05M001555 8.2e-48 193.7 175 63.4
Asa4G01895 Allium sativum HOM05M001634 ORTHO05M001555 5.3e-47 191.0 200 57.0
Bradi1g05707 Brachypodium distachyon HOM05M001634 ORTHO05M001555 6.8e-42 174.1 150 64.0
Potri.011G084150 Populus trichocarpa HOM05M001634 ORTHO05M001555 4.4e-41 171.4 111 77.5
SMO086G0048 Selaginella moellendorffii HOM05M001634 ORTHO05M001555 7.5e-41 170.6 273 43.6
SEGI_05928 Sequoiadendron giganteum HOM05M008732 ORTHO05M001555 2.7e-35 152.1 152 59.2
SEGI_32159 Sequoiadendron giganteum HOM05M001634 ORTHO05M001555 3.6e-35 151.8 152 58.6
SEGI_32489 Sequoiadendron giganteum HOM05M001634 ORTHO05M001555 8.0e-35 150.6 152 58.6
SEGI_16404 Sequoiadendron giganteum HOM05M001675 ORTHO05M001633 2.3e-34 149.1 153 58.2
Zm00001eb384430 Zea mays B73 HOM05M001634 ORTHO05M001555 5.4e-31 137.9 277 38.3
Zm00001eb384490 Zea mays B73 HOM05M001634 ORTHO05M001555 5.4e-31 137.9 277 38.3
Zm00001eb384540 Zea mays B73 HOM05M001634 ORTHO05M001555 5.4e-31 137.9 277 38.3
Zm00001eb437920 Zea mays B73 HOM05M001634 ORTHO05M001555 5.4e-31 137.9 277 38.3
Zm00001eb438010 Zea mays B73 HOM05M001634 ORTHO05M001555 5.4e-31 137.9 277 38.3
Zm00001eb439010 Zea mays B73 HOM05M001634 ORTHO05M001555 5.4e-31 137.9 277 38.3
Zm00001eb440820 Zea mays B73 HOM05M001634 ORTHO05M001555 5.4e-31 137.9 277 38.3
Zm00001eb442540 Zea mays B73 HOM05M001634 ORTHO05M001555 5.4e-31 137.9 277 38.3
Zm00007a00014864 Zea mays B104 HOM05M001634 ORTHO05M001555 5.4e-31 137.9 277 38.3
TRITD4Bv1G187790 Triticum turgidum HOM05M001634 ORTHO05M001555 1.2e-30 136.7 277 38.3
AET1Gv20400600 Aegilops tauschii HOM05M001634 ORTHO05M001555 2.7e-30 135.6 277 37.9
AET7Gv21315900 Aegilops tauschii HOM05M001634 ORTHO05M001555 2.7e-30 135.6 277 37.9
Horvu_MOREX_Un01G033200 Hordeum vulgare HOM05M001634 ORTHO05M001555 2.7e-30 135.6 277 37.9
Horvu_MOREX_Un01G039900 Hordeum vulgare HOM05M001634 ORTHO05M001555 2.7e-30 135.6 277 37.9
Ot_Un164_gn40422 Oropetium thomaeum HOM05M001634 ORTHO05M001555 2.7e-30 135.6 277 37.9
GWHGAZTO094670 Oryza alta HOM05M001634 ORTHO05M001555 2.7e-30 135.6 277 37.9
OsR498G0022193500.01 Oryza sativa ssp. indica HOM05M001634 ORTHO05M001555 2.7e-30 135.6 277 37.9
OsR498G0022201900.01 Oryza sativa ssp. indica HOM05M001634 ORTHO05M001555 2.7e-30 135.6 277 37.9
Seita.J009200 Setaria italica HOM05M001634 ORTHO05M001555 2.7e-30 135.6 277 37.9
Sevir.1G145524 Setaria viridis HOM05M001634 ORTHO05M001555 2.7e-30 135.6 277 37.9
TRITD6Bv1G180820 Triticum turgidum HOM05M001634 ORTHO05M001555 2.7e-30 135.6 277 37.9
TRITD6Bv1G093460 Triticum turgidum HOM05M001634 ORTHO05M001555 3.5e-30 135.2 277 37.9
GWHGASIY042884 Secale cereale HOM05M001634 ORTHO05M001555 4.5e-30 134.8 277 37.9
Horvu_MOREX_4H01G159300 Hordeum vulgare HOM05M001634 ORTHO05M001555 1.0e-29 133.7 277 37.5
TRITD1Av1G040110 Triticum turgidum HOM05M001634 ORTHO05M001555 1.0e-29 133.7 277 37.5
TRITD5Av1G239780 Triticum turgidum HOM05M001634 ORTHO05M001555 1.0e-29 133.7 277 37.5
SEGI_35420 Sequoiadendron giganteum HOM05M001634 ORTHO05M001555 2.3e-29 132.5 134 58.2
GWHGASIY019530 Secale cereale HOM05M001634 ORTHO05M001555 2.9e-29 132.1 277 37.5
TRITD7Bv1G057670 Triticum turgidum HOM05M001634 ORTHO05M001555 2.9e-29 132.1 277 37.5
Zm00007a00001158 Zea mays B104 HOM05M001115 ORTHO05M005454 1.5e-28 129.8 140 57.1
Asa3G00115 Allium sativum HOM05M001634 ORTHO05M001555 2.5e-28 129.0 134 58.2
Horvu_MOREX_5H01G419800 Hordeum vulgare HOM05M001634 ORTHO05M001555 7.2e-28 127.5 276 36.6
TRITD2Bv1G119500 Triticum turgidum HOM05M001634 ORTHO05M001555 1.2e-27 126.7 276 36.2
TraesCS3A03G0432500 Triticum aestivum HOM05M001634 ORTHO05M001555 2.8e-27 125.6 277 36.5
Horvu_MOREX_1H01G059400 Hordeum vulgare HOM05M001634 ORTHO05M001555 3.6e-27 125.2 256 37.9
Aco026840 Ananas comosus HOM05M001634 ORTHO05M001555 4.7e-27 124.8 276 35.9
Ot_Un6_gn41083 Oropetium thomaeum HOM05M001634 ORTHO05M001555 4.7e-27 124.8 246 36.2
OsKitaake12g085200 Oryza sativa Kitaake HOM05M001634 ORTHO05M001555 1.8e-26 122.9 255 38.0
Solyc00g500169.1 Solanum lycopersicum HOM05M001634 ORTHO05M001555 1.8e-26 122.9 276 35.9
Asa2G00417 Allium sativum HOM05M001634 ORTHO05M001555 5.2e-26 121.3 276 35.1
Asa1G03079 Allium sativum HOM05M001634 ORTHO05M001555 6.8e-26 120.9 276 35.1
Asa5G02380 Allium sativum HOM05M001634 ORTHO05M001555 6.8e-26 120.9 276 35.1
Asa5G02662 Allium sativum HOM05M001634 ORTHO05M001555 6.8e-26 120.9 276 35.1
Horvu_MOREX_4H01G159600 Hordeum vulgare HOM05M001634 ORTHO05M001555 8.9e-26 120.6 277 36.1
Zosma372g00070 Zostera marina HOM05M001634 ORTHO05M001555 2.0e-25 119.4 254 37.0
Zosma52g00310 Zostera marina HOM05M001634 ORTHO05M001555 2.0e-25 119.4 254 37.0
Zosma848g00160 Zostera marina HOM05M001634 ORTHO05M001555 2.0e-25 119.4 254 37.0
ATMG00513 Arabidopsis thaliana HOM05M001634 ORTHO05M001555 2.6e-25 119.0 276 34.8
Solyc00g500098.1 Solanum lycopersicum HOM05M001634 ORTHO05M001555 4.4e-25 118.2 253 36.8
Solyc00g500271.1 Solanum lycopersicum HOM05M001634 ORTHO05M001555 4.4e-25 118.2 253 36.8
Solyc00g500317.1 Solanum lycopersicum HOM05M001634 ORTHO05M001555 4.4e-25 118.2 253 36.8
MBI06_g25391_MAGBIO Magnolia biondii HOM05M001634 ORTHO05M001555 2.2e-24 115.9 276 34.4
OsR498G0306679100.01 Oryza sativa ssp. indica HOM05M001634 ORTHO05M001555 2.8e-24 115.5 64 82.8
Solyc01g017100.2 Solanum lycopersicum HOM05M001634 ORTHO05M001555 4.9e-24 114.8 100 65.0
Seita.J016800 Setaria italica HOM05M001634 ORTHO05M001555 1.4e-23 113.2 124 55.6
AET4Gv20292500 Aegilops tauschii HOM05M001634 ORTHO05M001555 2.4e-23 112.5 194 41.2
V3.Lp_chr3_0G14042 Lolium perenne HOM05M001634 ORTHO05M001555 4.1e-23 111.7 183 42.6
Solyc00g500195.1 Solanum lycopersicum HOM05M001634 ORTHO05M001555 4.1e-23 111.7 58 96.6
AET0Gv20055700 Aegilops tauschii HOM05M001634 ORTHO05M001555 9.2e-23 110.5 238 37.8
Zm00007a00008906 Zea mays B104 HOM05M000431 ORTHO05M000765 2.0e-22 109.4 178 43.8
Solyc01g017090.2 Solanum lycopersicum HOM05M001634 ORTHO05M001555 3.5e-22 108.6 63 81.0
TraesCS4A03G0315400 Triticum aestivum HOM05M001634 ORTHO05M001555 3.5e-22 108.6 128 53.9
AET3Gv20196400 Aegilops tauschii HOM05M001634 ORTHO05M001555 7.8e-22 107.5 194 40.2
Zosma07g02610 Zostera marina HOM05M001634 ORTHO05M001555 8.6e-21 104.0 186 39.8
Misin13G080400 Miscanthus sinensis HOM05M001634 ORTHO05M001555 1.5e-20 103.2 155 45.2
Mapoly0092s0002 Marchantia polymorpha HOM05M001634 ORTHO05M001555 9.5e-20 100.5 172 43.0
TRIDC4AG060080 Triticum dicoccoides HOM05M001634 ORTHO05M001555 9.5e-20 100.5 58 84.5
Solyc02g011710.1 Solanum lycopersicum HOM05M001634 ORTHO05M001555 1.2e-19 100.1 95 63.2
Horvu_MOREX_Un01G051700 Hordeum vulgare HOM05M001634 ORTHO05M001555 3.6e-19 98.6 162 40.7
Misin11G049300 Miscanthus sinensis HOM05M001634 ORTHO05M001555 4.7e-19 98.2 224 36.2
OB0038G10020 Oryza brachyantha HOM05M001634 ORTHO05M001555 4.7e-19 98.2 58 82.8
TRITD3Av1G276010 Triticum turgidum HOM05M001634 ORTHO05M001555 4.7e-19 98.2 58 82.8
TRITD3Bv1G065540 Triticum turgidum HOM05M001634 ORTHO05M001555 4.7e-19 98.2 171 40.9
GWHGAORA002511 Cenchrus purpureus HOM05M001634 ORTHO05M001555 6.1e-19 97.8 58 82.8
AET2Gv20694100 Aegilops tauschii HOM05M001634 ORTHO05M001555 8.0e-19 97.4 173 41.6
AET4Gv20047000 Aegilops tauschii HOM05M001634 ORTHO05M001555 1.0e-18 97.1 162 40.1
Glyma.11G081100 Glycine max HOM05M001634 ORTHO05M001555 1.4e-18 96.7 119 53.8
OsR498G0204518900.01 Oryza sativa ssp. indica HOM05M001634 ORTHO05M001555 1.4e-18 96.7 58 81.0
OsR498G0407986900.01 Oryza sativa ssp. indica HOM05M001634 ORTHO05M001555 3.1e-18 95.5 137 46.7
TRIDC3BG000690 Triticum dicoccoides HOM05M001634 ORTHO05M001555 1.2e-17 93.6 58 79.3
Asa3G03386 Allium sativum HOM05M001634 ORTHO05M001555 1.5e-17 93.2 106 55.7
TRITD3Av1G087430 Triticum turgidum HOM05M001634 ORTHO05M001555 1.5e-17 93.2 177 39.0
Aco025651 Ananas comosus HOM05M001634 ORTHO05M001555 2.6e-17 92.4 170 37.6
Solyc02g032320.1 Solanum lycopersicum HOM05M001634 ORTHO05M001555 3.4e-17 92.0 50 88.0
DDU608G0015 Dioscorea dumetorum HOM05M001634 ORTHO05M001555 4.4e-17 91.7 162 38.9
TRIDC7BG017810 Triticum dicoccoides HOM05M001634 ORTHO05M001555 4.4e-17 91.7 58 79.3
TRIDC5AG060200 Triticum dicoccoides HOM05M001634 ORTHO05M001555 9.8e-17 90.5 157 42.7
DDU759G0006 Dioscorea dumetorum HOM05M001634 ORTHO05M001555 1.3e-16 90.1 161 38.5
DDU760G0001 Dioscorea dumetorum HOM05M001634 ORTHO05M001555 1.3e-16 90.1 161 38.5
DDU760G0010 Dioscorea dumetorum HOM05M001634 ORTHO05M001555 1.3e-16 90.1 161 38.5
mito12_g00010 Musa acuminata HOM05M001634 ORTHO05M001555 4.9e-16 88.2 254 34.3
MBI05_g05342_MAGBIO Magnolia biondii HOM05M001634 ORTHO05M001555 8.3e-16 87.4 157 38.2
Solyc02g011720.1 Solanum lycopersicum HOM05M001634 ORTHO05M001555 4.1e-15 85.1 58 75.9
CDE02G3422 Ceratophyllum demersum HOM05M001634 ORTHO05M001555 7.0e-15 84.3 161 37.3
Ot_Un4_gn40974 Oropetium thomaeum HOM05M001634 ORTHO05M001555 2.7e-14 82.4 242 29.8
Ot_Un4_gn40979 Oropetium thomaeum HOM05M001634 ORTHO05M001555 2.7e-14 82.4 242 29.8
SMO053G0013 Selaginella moellendorffii HOM05M001634 ORTHO05M001555 3.5e-14 82.0 254 30.7
Horvu_MOREX_3H01G276400 Hordeum vulgare HOM05M001634 ORTHO05M001555 1.3e-13 80.1 156 38.5
SEGI_04456 Sequoiadendron giganteum HOM05M001634 ORTHO05M001555 1.7e-13 79.7 195 34.4
SEGI_05810 Sequoiadendron giganteum HOM05M001634 ORTHO05M001555 2.1e-11 72.8 195 33.8
MBI14_g34533_MAGBIO Magnolia biondii HOM05M001634 ORTHO05M001555 8.0e-11 70.9 59 74.6
EJB05_27112 Eragrostis curvula HOM05M001634 ORTHO05M001555 1.1e-10 70.5 54 66.7
TRITD3Bv1G018200 Triticum turgidum HOM05M001634 ORTHO05M001555 6.8e-10 67.8 134 36.6
Solyc03g013620.1 Solanum lycopersicum HOM05M001634 ORTHO05M001555 2.6e-09 65.9 36 91.7
Ot_Un132_gn40084 Oropetium thomaeum HOM05M001634 ORTHO05M001555 2.9e-08 62.4 81 49.4
OB12G18420 Oryza brachyantha HOM05M001634 ORTHO05M001555 1.4e-07 60.1 44 65.9
Asa5G01354 Allium sativum HOM05M001634 ORTHO05M001555 1.9e-07 59.7 98 39.8
DDU123G0033 Dioscorea dumetorum HOM05M001634 ORTHO05M001555 3.2e-07 58.9 53 60.4
TRIDC4AG020330 Triticum dicoccoides HOM05M001634 ORTHO05M001555 9.2e-07 57.4 42 71.4
TRIDC3AG071600 Triticum dicoccoides HOM05M001634 ORTHO05M001555 1.2e-06 57.0 32 81.2
Solyc11g044645.1 Solanum lycopersicum HOM05M001634 ORTHO05M001555 2.7e-06 55.8 55 54.5


User provided reference genes

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