Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g020000.1 Solanum lycopersicum HOM05M005639 ORTHO05M006729 2.2e-117 424.9 211 100.0
Solyc03g025710.3 Solanum lycopersicum HOM05M005639 ORTHO05M006729 2.5e-44 182.2 281 43.1
Potri.005G054600 Populus trichocarpa HOM05M005639 ORTHO05M006729 5.2e-26 121.3 221 35.7
Glyma.08G240100 Glycine max HOM05M005639 ORTHO05M006729 1.1e-23 113.6 184 35.9
p5.00_sc00192_p0016 Elaeis guineensis HOM05M005639 ORTHO05M006729 1.6e-22 109.8 193 37.3
Aco011278 Ananas comosus HOM05M005639 ORTHO05M006729 1.0e-21 107.1 203 35.0
evm.TU.AsparagusV1_10.1154.V1.1 Asparagus officinalis HOM05M005639 ORTHO05M006729 1.0e-21 107.1 194 35.6
Glyma.12G002000 Glycine max HOM05M005639 ORTHO05M006729 1.0e-21 107.1 184 33.7
ATR1136G034 Amborella trichopoda HOM05M005639 ORTHO05M006729 5.0e-21 104.8 183 35.0
Ma03_g22810 Musa acuminata HOM05M005639 ORTHO05M006729 5.0e-21 104.8 185 36.2
CALSI_Maker00031948 Calamus simplicifolius HOM05M005639 ORTHO05M006729 1.6e-19 99.8 206 33.5
Ot_Chr7_g24509 Oropetium thomaeum HOM05M005639 ORTHO05M006729 2.1e-19 99.4 203 34.0
Zjn_sc00062.1.g00910.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M005639 ORTHO05M006729 2.7e-19 99.0 189 35.4
Bradi1g53050 Brachypodium distachyon HOM05M005639 ORTHO05M006729 3.6e-19 98.6 188 35.1
Pahal.2G094600 Panicum hallii HOM05M005639 ORTHO05M006729 3.6e-19 98.6 196 34.7
Sspon.02G0021040-1A Saccharum spontaneum HOM05M005639 ORTHO05M006729 4.7e-19 98.2 217 33.2
Sspon.02G0021040-3D Saccharum spontaneum HOM05M005639 ORTHO05M006729 4.7e-19 98.2 217 33.2
TraesCS5A03G0346400 Triticum aestivum HOM05M005639 ORTHO05M006729 6.1e-19 97.8 187 35.3
TRIDC5AG021090 Triticum dicoccoides HOM05M005639 ORTHO05M006729 6.1e-19 97.8 187 35.3
TRITD5Av1G092730 Triticum turgidum HOM05M005639 ORTHO05M006729 6.1e-19 97.8 187 35.3
Zosma03g36590 Zostera marina HOM05M005639 ORTHO05M006729 6.1e-19 97.8 248 30.6
TraesCS5B03G0339100 Triticum aestivum HOM05M005639 ORTHO05M006729 1.0e-18 97.1 187 35.3
TRITD5Bv1G075980 Triticum turgidum HOM05M005639 ORTHO05M006729 1.0e-18 97.1 187 35.3
PH02Gene29802 Phyllostachys edulis HOM05M005639 ORTHO05M006729 1.4e-18 96.7 188 34.6
PH02Gene41275 Phyllostachys edulis HOM05M005639 ORTHO05M006729 1.4e-18 96.7 188 35.1
GWHGAORA047258 Cenchrus purpureus HOM05M005639 ORTHO05M006729 1.8e-18 96.3 192 34.4
Horvu_MOREX_5H01G216400 Hordeum vulgare HOM05M005639 ORTHO05M006729 1.8e-18 96.3 187 35.3
V3.Lp_chr4_0G10194 Lolium perenne HOM05M005639 ORTHO05M006729 1.8e-18 96.3 199 34.2
OsKitaake07g095900 Oryza sativa Kitaake HOM05M005639 ORTHO05M006729 1.8e-18 96.3 188 34.0
Os07g0264800 Oryza sativa ssp. japonica HOM05M005639 ORTHO05M006729 1.8e-18 96.3 188 34.0
HPP92_002765 Vanilla planifolia HOM05M005639 ORTHO05M006729 1.8e-18 96.3 201 32.3
AET5Gv20338600 Aegilops tauschii HOM05M005639 ORTHO05M006729 2.3e-18 95.9 189 34.4
Seita.9G386700 Setaria italica HOM05M005639 ORTHO05M006729 2.3e-18 95.9 188 34.6
Sevir.2G106700 Setaria viridis HOM05M005639 ORTHO05M006729 2.3e-18 95.9 188 34.6
Dexi2B01G0008600 Digitaria exilis HOM05M005639 ORTHO05M006729 3.0e-18 95.5 211 33.2
EJB05_13137 Eragrostis curvula HOM05M005639 ORTHO05M006729 3.0e-18 95.5 199 33.7
Misin04G102000 Miscanthus sinensis HOM05M005639 ORTHO05M006729 3.0e-18 95.5 202 33.2
TRIDC5BG021790 Triticum dicoccoides HOM05M005639 ORTHO05M006729 3.0e-18 95.5 187 34.8
Misin03G078800 Miscanthus sinensis HOM05M005639 ORTHO05M006729 5.2e-18 94.7 202 33.2
GWHGASIY025270 Secale cereale HOM05M005639 ORTHO05M006729 8.8e-18 94.0 187 34.8
GWHGAZTO090599 Oryza alta HOM05M005639 ORTHO05M006729 1.5e-17 93.2 188 34.0
SEGI_40158 Sequoiadendron giganteum HOM05M005639 ORTHO05M006729 1.5e-17 93.2 209 31.6
Sspon.02G0021040-2C Saccharum spontaneum HOM05M005639 ORTHO05M006729 4.4e-17 91.7 217 32.7
Sobic.002G102200 Sorghum bicolor HOM05M005639 ORTHO05M006729 5.7e-17 91.3 237 31.6
OB07G16970 Oryza brachyantha HOM05M005639 ORTHO05M006729 1.3e-16 90.1 173 34.7
CDE04G3476 Ceratophyllum demersum HOM05M005639 ORTHO05M006729 2.2e-16 89.4 124 38.7
Zm00007a00048733 Zea mays B104 HOM05M005639 ORTHO05M006729 3.1e-15 85.5 189 32.3
DDU445G0105 Dioscorea dumetorum HOM05M005639 ORTHO05M006729 9.1e-15 84.0 219 31.1
Pp3c3_19510 Physcomitrium patens HOM05M005639 ORTHO05M006729 2.7e-14 82.4 190 29.5
Asa2G02865 Allium sativum HOM05M005639 ORTHO05M006729 4.5e-14 81.6 71 56.3
SMO352G0005 Selaginella moellendorffii HOM05M005639 ORTHO05M006729 1.0e-13 80.5 184 30.4
TraesCS5D03G0332600 Triticum aestivum HOM05M005639 ORTHO05M006729 2.3e-13 79.3 71 54.9
AT1G72030 Arabidopsis thaliana HOM05M005639 ORTHO05M006729 5.0e-13 78.2 70 52.9
SEGI_32338 Sequoiadendron giganteum HOM05M005639 ORTHO05M006729 5.5e-12 74.7 53 62.3
SEGI_10565 Sequoiadendron giganteum HOM05M005639 ORTHO05M006729 1.2e-11 73.6 66 51.5
Spipo4G0073800 Spirodela polyrhiza HOM05M005639 ORTHO05M006729 1.0e-10 70.5 143 35.0
Mapoly0148s0033 Marchantia polymorpha HOM05M005639 ORTHO05M006729 1.4e-10 70.1 171 30.4
Asa7G03440 Allium sativum HOM05M005639 ORTHO05M006729 2.2e-08 62.8 109 38.5
SEGI_00952 Sequoiadendron giganteum HOM05M005639 ORTHO05M006729 1.4e-07 60.1 49 55.1
Asa2G02867 Allium sativum HOM05M005639 ORTHO05M006729 9.2e-07 57.4 169 27.8
Asa8G05158 Allium sativum HOM05M005639 ORTHO05M006729 1.6e-06 56.6 50 52.0
Zm00001eb304740 Zea mays B73 HOM05M005639 ORTHO05M006729 7.8e-06 54.3 71 43.7


User provided reference genes

Program Settings