Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g017230.2 Solanum lycopersicum HOM05M004881 ORTHO05M006065 4.2e-220 766.9 379 100.0
Potri.013G114400 Populus trichocarpa HOM05M004881 ORTHO05M006065 6.9e-122 440.7 337 64.4
MBI17_g15293_MAGBIO Magnolia biondii HOM05M004881 ORTHO05M006065 8.5e-120 433.7 369 59.3
evm.TU.AsparagusV1_10.552.V1.1 Asparagus officinalis HOM05M004881 ORTHO05M006065 1.1e-116 423.3 305 66.2
p5.00_sc00439_p0001 Elaeis guineensis HOM05M004881 ORTHO05M006065 1.3e-115 419.9 352 60.5
Zosma04g23440 Zostera marina HOM05M004881 ORTHO05M006065 6.3e-115 417.5 288 69.1
Aco011248 Ananas comosus HOM05M004881 ORTHO05M006065 1.4e-114 416.4 292 67.1
Ma03_g23130 Musa acuminata HOM05M004881 ORTHO05M006065 5.9e-113 411.0 335 60.3
Bradi2g56537 Brachypodium distachyon HOM05M004881 ORTHO05M006065 7.2e-111 404.1 295 64.7
DDU498G0011 Dioscorea dumetorum HOM05M004881 ORTHO05M006065 9.4e-111 403.7 318 61.6
DDU556G1251 Dioscorea dumetorum HOM05M004881 ORTHO05M006065 9.4e-111 403.7 318 61.6
AT1G34380 Arabidopsis thaliana HOM05M004881 ORTHO05M006065 2.1e-110 402.5 295 65.8
OsR498G0102432600.01 Oryza sativa ssp. indica HOM05M004881 ORTHO05M006065 4.6e-110 401.4 287 64.8
Spipo13G0011400 Spirodela polyrhiza HOM05M004881 ORTHO05M006065 4.6e-110 401.4 282 68.4
OB01G47690 Oryza brachyantha HOM05M004881 ORTHO05M006065 6.1e-110 401.0 294 63.3
Asa2G02679 Allium sativum HOM05M004881 ORTHO05M006065 1.0e-109 400.2 346 58.4
EJB05_18259 Eragrostis curvula HOM05M004881 ORTHO05M006065 3.9e-109 398.3 293 64.5
GWHGAZTO006223 Oryza alta HOM05M004881 ORTHO05M006065 5.1e-109 397.9 295 63.1
GWHGAORA030740 Cenchrus purpureus HOM05M004881 ORTHO05M006065 1.5e-108 396.4 289 64.7
PH02Gene27839 Phyllostachys edulis HOM05M004881 ORTHO05M006065 1.5e-108 396.4 323 59.1
TRIDC3BG061690 Triticum dicoccoides HOM05M004881 ORTHO05M006065 2.0e-108 396.0 334 58.1
Pahal.5G072800 Panicum hallii HOM05M004881 ORTHO05M006065 4.4e-108 394.8 289 64.4
GWHGAORA045625 Cenchrus purpureus HOM05M004881 ORTHO05M006065 9.7e-108 393.7 289 64.0
Seita.5G398500 Setaria italica HOM05M004881 ORTHO05M006065 1.3e-107 393.3 289 64.4
Sevir.5G403800 Setaria viridis HOM05M004881 ORTHO05M006065 1.3e-107 393.3 289 64.4
TraesCS3B03G1030900 Triticum aestivum HOM05M004881 ORTHO05M006065 1.3e-107 393.3 281 65.1
TRITD3Bv1G215280 Triticum turgidum HOM05M004881 ORTHO05M006065 1.3e-107 393.3 281 65.1
GWHGASIY016868 Secale cereale HOM05M004881 ORTHO05M006065 3.7e-107 391.7 281 64.8
TraesCS3D03G0835500 Triticum aestivum HOM05M004881 ORTHO05M006065 3.7e-107 391.7 333 58.3
AET3Gv20858600 Aegilops tauschii HOM05M004881 ORTHO05M006065 6.3e-107 391.0 280 65.4
Sobic.003G373300 Sorghum bicolor HOM05M004881 ORTHO05M006065 6.3e-107 391.0 289 63.7
Ot_Chr3_g12944 Oropetium thomaeum HOM05M004881 ORTHO05M006065 1.4e-106 389.8 285 63.5
Misin06G342000 Miscanthus sinensis HOM05M004881 ORTHO05M006065 1.8e-106 389.4 280 64.6
TraesCS3A03G0909800 Triticum aestivum HOM05M004881 ORTHO05M006065 2.4e-106 389.0 333 56.8
TRITD3Av1G229200 Triticum turgidum HOM05M004881 ORTHO05M006065 2.4e-106 389.0 333 56.8
V3.Lp_chr3_0G20670 Lolium perenne HOM05M004881 ORTHO05M006065 3.1e-106 388.7 332 57.2
Horvu_MOREX_3H01G502300 Hordeum vulgare HOM05M004881 ORTHO05M006065 4.5e-105 384.8 285 62.8
ATR1134G043 Amborella trichopoda HOM05M004881 ORTHO05M006065 2.2e-104 382.5 277 68.2
Zm00007a00044598 Zea mays B104 HOM05M004881 ORTHO05M006065 5.0e-104 381.3 281 62.6
Sspon.03G0029090-1B Saccharum spontaneum HOM05M004881 ORTHO05M006065 2.5e-103 379.0 303 60.4
OsKitaake01g418200 Oryza sativa Kitaake HOM05M004881 ORTHO05M006065 3.3e-100 368.6 262 66.4
Os01g0874800 Oryza sativa ssp. japonica HOM05M004881 ORTHO05M006065 3.3e-100 368.6 262 66.4
CDE06G1238 Ceratophyllum demersum HOM05M004881 ORTHO05M006065 5.7e-100 367.9 301 62.8
Misin05G347600 Miscanthus sinensis HOM05M004881 ORTHO05M006065 7.4e-100 367.5 289 60.9
GWHGAZTO058548 Oryza alta HOM05M004881 ORTHO05M006065 3.7e-99 365.2 259 65.3
Glyma.16G156300 Glycine max HOM05M004881 ORTHO05M006065 4.2e-95 351.7 303 58.4
Zm00001eb146190 Zea mays B73 HOM05M004881 ORTHO05M006065 2.7e-94 349.0 271 62.0
TRIDC3AG055100 Triticum dicoccoides HOM05M004881 ORTHO05M006065 1.2e-89 333.6 242 64.0
HPP92_000088 Vanilla planifolia HOM05M004881 ORTHO05M006065 3.0e-85 318.9 247 62.3
Zm00007a00006298 Zea mays B104 HOM05M004881 ORTHO05M006065 2.6e-84 315.8 282 56.0
Mapoly0035s0044 Marchantia polymorpha HOM05M004881 ORTHO05M006065 5.9e-81 304.7 271 54.2
MBI17_g01761_MAGBIO Magnolia biondii HOM05M004881 ORTHO05M006065 2.9e-80 302.4 198 70.7
SMO271G0041 Selaginella moellendorffii HOM05M004881 ORTHO05M006065 2.1e-78 296.2 274 52.9
SMO308G0008 Selaginella moellendorffii HOM05M004881 ORTHO05M006065 6.1e-78 294.7 274 52.9
Pp3c1_23520 Physcomitrium patens HOM05M004881 ORTHO05M006065 2.6e-76 289.3 295 50.2
SMO174G0158 Selaginella moellendorffii HOM05M004881 ORTHO05M006065 8.0e-70 267.7 270 48.5
Zm00001eb366480 Zea mays B73 HOM05M004881 ORTHO05M006065 1.4e-66 256.9 283 47.3
HPP92_000081 Vanilla planifolia HOM05M004881 ORTHO05M006065 8.6e-64 247.7 159 69.8
CALSI_Maker00040553 Calamus simplicifolius HOM05M004881 ORTHO05M006065 2.0e-60 236.5 187 60.4
Dexi5B01G0034080 Digitaria exilis HOM05M004881 ORTHO05M006065 4.1e-58 228.8 292 42.8
Zm00007a00006294 Zea mays B104 HOM05M004881 ORTHO05M006065 1.5e-55 220.3 181 58.6
AagrBONN_evm.TU.Sc2ySwM_344.1289 Anthoceros agrestis HOM05M004881 ORTHO05M006065 4.0e-53 212.2 175 55.4
Sspon.03G0029090-2D Saccharum spontaneum HOM05M004881 ORTHO05M006065 1.3e-48 197.2 156 60.3
CBR_g56098 Chara braunii HOM05M004881 ORTHO05M006065 6.6e-48 194.9 292 39.7
Zm00001eb366510 Zea mays B73 HOM05M004881 ORTHO05M006065 3.2e-42 176.0 168 53.6
Zjn_sc00237.1.g00030.1.cf.mkhc Zoysia japonica ssp. nagirizaki HOM05M004881 ORTHO05M006065 6.6e-40 168.3 112 67.0
Zjn_sc00034.1.g05480.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M004881 ORTHO05M006065 1.6e-33 147.1 145 51.0
SMO174G0079 Selaginella moellendorffii HOM05M004881 ORTHO05M006065 7.8e-33 144.8 210 40.0
Zjn_sc00034.1.g05490.1.es.mkhc Zoysia japonica ssp. nagirizaki HOM05M004881 ORTHO05M006065 7.8e-33 144.8 101 63.4
SEGI_14270 Sequoiadendron giganteum HOM05M004881 ORTHO05M006065 1.7e-27 127.1 118 51.7
CALSI_Maker00040572 Calamus simplicifolius HOM05M004881 ORTHO05M006065 6.0e-25 118.6 120 51.7
HPP92_000083 Vanilla planifolia HOM05M004881 ORTHO05M006065 4.3e-23 112.5 121 51.2
SMO308G0023 Selaginella moellendorffii HOM05M004881 ORTHO05M006065 7.4e-23 111.7 163 38.7
SMO308G0062 Selaginella moellendorffii HOM05M004881 ORTHO05M006065 7.4e-23 111.7 163 38.7
AagrBONN_evm.TU.Sc2ySwM_228.5815 Anthoceros agrestis HOM05M005192 ORTHO05M006101 4.8e-22 109.0 185 35.7
AagrBONN_evm.TU.Sc2ySwM_228.1809 Anthoceros agrestis HOM05M005192 ORTHO05M006101 6.2e-22 108.6 350 26.9
Glyma.02G074400 Glycine max HOM05M004881 ORTHO05M006065 6.2e-22 108.6 73 69.9
Pp3c16_17520 Physcomitrium patens HOM05M005192 ORTHO05M006101 3.1e-21 106.3 278 28.4
Dexi5A01G0033960 Digitaria exilis HOM05M004881 ORTHO05M006065 1.2e-20 104.4 89 52.8
MBI08_g25563_MAGBIO Magnolia biondii HOM05M005192 ORTHO05M006101 9.9e-20 101.3 213 30.5
ATR0743G039 Amborella trichopoda HOM05M005192 ORTHO05M006101 2.9e-19 99.8 294 27.2
Bradi1g69010 Brachypodium distachyon HOM05M005192 ORTHO05M006101 6.4e-19 98.6 294 25.9
GWHGASIY000891 Secale cereale HOM05M005192 ORTHO05M006101 1.1e-18 97.8 259 26.3
GWHGASIY041254 Secale cereale HOM05M005192 ORTHO05M006101 1.1e-18 97.8 259 26.3
TraesCS4D03G0566300 Triticum aestivum HOM05M005192 ORTHO05M006101 1.1e-18 97.8 259 26.3
TRIDC4BG041150 Triticum dicoccoides HOM05M005192 ORTHO05M006101 1.1e-18 97.8 259 26.3
TRITD4Av1G028180 Triticum turgidum HOM05M005192 ORTHO05M006101 1.1e-18 97.8 259 26.3
Sevir.8G080500 Setaria viridis HOM05M005192 ORTHO05M006101 2.4e-18 96.7 242 26.4
p5.00_sc00123_p0068 Elaeis guineensis HOM05M005192 ORTHO05M006101 3.2e-18 96.3 329 25.8
GWHGAZTO022894 Oryza alta HOM05M005192 ORTHO05M006101 5.5e-18 95.5 296 25.3
Mapoly0001s0155 Marchantia polymorpha HOM05M005192 ORTHO05M006101 9.3e-18 94.7 285 28.4
AT3G52050 Arabidopsis thaliana HOM05M005192 ORTHO05M006101 1.2e-17 94.4 259 27.4
CDE07G1035 Ceratophyllum demersum HOM05M005192 ORTHO05M006101 1.2e-17 94.4 212 29.7
Dexi9B01G0041200 Digitaria exilis HOM05M005192 ORTHO05M006101 1.2e-17 94.4 237 25.3
Dexi9A01G0042070 Digitaria exilis HOM05M005192 ORTHO05M006101 1.6e-17 94.0 272 25.0
Ot_Chr4_g00612 Oropetium thomaeum HOM05M005192 ORTHO05M006101 1.6e-17 94.0 273 26.0
Asa8G01265 Allium sativum HOM05M005192 ORTHO05M006101 2.1e-17 93.6 195 29.2
Ma03_g27300 Musa acuminata HOM05M005192 ORTHO05M006101 2.1e-17 93.6 344 26.2
OsKitaake03g097300 Oryza sativa Kitaake HOM05M005192 ORTHO05M006101 2.1e-17 93.6 208 28.4
OsR498G0305493300.01 Oryza sativa ssp. indica HOM05M005192 ORTHO05M006101 2.1e-17 93.6 208 28.4
Os03g0227300 Oryza sativa ssp. japonica HOM05M005192 ORTHO05M006101 2.1e-17 93.6 208 28.4
PH02Gene22802 Phyllostachys edulis HOM05M005192 ORTHO05M006101 2.7e-17 93.2 208 28.4
TraesCS4A03G0157100 Triticum aestivum HOM05M005192 ORTHO05M006101 2.7e-17 93.2 267 27.0
TRIDC4AG009600 Triticum dicoccoides HOM05M005192 ORTHO05M006101 2.7e-17 93.2 267 27.0
Glyma.07G208400 Glycine max HOM05M005192 ORTHO05M006101 3.5e-17 92.8 254 24.4
HPP92_024926 Vanilla planifolia HOM05M005192 ORTHO05M006101 4.6e-17 92.4 234 26.9
Spipo9G0046700 Spirodela polyrhiza HOM05M005192 ORTHO05M006101 6.0e-17 92.0 221 28.1
PH02Gene32778 Phyllostachys edulis HOM05M005192 ORTHO05M006101 1.0e-16 91.3 193 29.5
Glyma.02G137000 Glycine max HOM05M005192 ORTHO05M006101 1.3e-16 90.9 261 25.3
Potri.013G125700 Populus trichocarpa HOM05M005192 ORTHO05M006101 1.3e-16 90.9 317 25.2
AET4Gv20588500 Aegilops tauschii HOM05M005192 ORTHO05M006101 1.8e-16 90.5 193 29.5
OB03G19320 Oryza brachyantha HOM05M005192 ORTHO05M006101 1.8e-16 90.5 208 27.9
TraesCS4B03G0637400 Triticum aestivum HOM05M005192 ORTHO05M006101 1.8e-16 90.5 193 29.5
TRITD4Bv1G141410 Triticum turgidum HOM05M005192 ORTHO05M006101 1.8e-16 90.5 193 29.5
Zjn_sc00003.1.g07170.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M005192 ORTHO05M006101 2.3e-16 90.1 275 24.0
Horvu_MOREX_4H01G367500 Hordeum vulgare HOM05M005192 ORTHO05M006101 3.0e-16 89.7 193 29.5
Pahal.9G542200 Panicum hallii HOM05M005192 ORTHO05M006101 3.0e-16 89.7 208 27.4
Sobic.001G445600 Sorghum bicolor HOM05M005192 ORTHO05M006101 3.0e-16 89.7 208 27.4
GWHGAORA026842 Cenchrus purpureus HOM05M005192 ORTHO05M006101 5.1e-16 89.0 208 27.4
Misin02G405100 Miscanthus sinensis HOM05M005192 ORTHO05M006101 5.1e-16 89.0 208 26.9
HPP92_024943 Vanilla planifolia HOM05M005192 ORTHO05M006101 5.1e-16 89.0 194 29.4
GWHGAORA055177 Cenchrus purpureus HOM05M005192 ORTHO05M006101 8.7e-16 88.2 208 27.4
GWHGAORA055192 Cenchrus purpureus HOM05M005192 ORTHO05M006101 8.7e-16 88.2 208 27.4
Seita.8G079400 Setaria italica HOM05M005192 ORTHO05M006101 8.7e-16 88.2 173 29.5
Seita.9G479700 Setaria italica HOM05M005192 ORTHO05M006101 8.7e-16 88.2 208 27.9
Sevir.9G483200 Setaria viridis HOM05M005192 ORTHO05M006101 8.7e-16 88.2 208 27.9
MCO14G121 Micromonas commoda HOM05M005192 ORTHO05M006101 1.5e-15 87.4 214 31.3
Zosma01g16160 Zostera marina HOM05M005192 ORTHO05M006101 1.5e-15 87.4 171 29.8
SMO271G0001 Selaginella moellendorffii HOM05M004881 ORTHO05M006065 1.9e-15 87.0 90 50.0
V3.Lp_chr4_0G23908 Lolium perenne HOM05M005192 ORTHO05M006101 2.5e-15 86.7 193 29.0
Zm00001eb399280 Zea mays B73 HOM05M005192 ORTHO05M006101 3.3e-15 86.3 215 26.5
Zm00007a00000151 Zea mays B104 HOM05M005192 ORTHO05M006101 5.6e-15 85.5 173 27.7
Misin01G424400 Miscanthus sinensis HOM05M005192 ORTHO05M006101 1.3e-14 84.3 207 26.6
SMO232G0046 Selaginella moellendorffii HOM05M005192 ORTHO05M006101 1.6e-14 84.0 241 25.3
Aco013377 Ananas comosus HOM05M005192 ORTHO05M006101 2.1e-14 83.6 302 25.8
SEGI_01886 Sequoiadendron giganteum HOM05M005192 ORTHO05M006101 2.8e-14 83.2 212 25.5
evm.TU.AsparagusV1_08.829.V1.1 Asparagus officinalis HOM05M005192 ORTHO05M006101 8.2e-14 81.6 206 26.2
p5.00_sc00051_p0020 Elaeis guineensis HOM05M004881 ORTHO05M006065 1.4e-13 80.9 60 58.3
Ot_Chr9_gn39265 Oropetium thomaeum HOM05M004881 ORTHO05M006065 2.6e-12 76.6 70 57.1
SMO210G0005 Selaginella moellendorffii HOM05M004881 ORTHO05M006065 3.4e-12 76.3 73 53.4
DDU407G0699 Dioscorea dumetorum HOM05M005192 ORTHO05M006101 1.7e-11 73.9 172 28.5
CBR_g41469 Chara braunii HOM05M000008 ORTHO05M003506 2.2e-11 73.6 166 24.7
SMO210G0002 Selaginella moellendorffii HOM05M004881 ORTHO05M006065 1.9e-10 70.5 77 44.2
CALSI_Maker00019537 Calamus simplicifolius HOM05M005192 ORTHO05M006101 4.2e-10 69.3 244 23.0
Sspon.01G0036600-2D Saccharum spontaneum HOM05M005192 ORTHO05M006101 1.6e-09 67.4 181 25.4
Asa3G05040 Allium sativum HOM05M004881 ORTHO05M006065 3.5e-09 66.2 72 40.3
DDU144G0013 Dioscorea dumetorum HOM05M005192 ORTHO05M006101 1.0e-08 64.7 189 26.5
PRCOL_00004663 Prasinoderma coloniale HOM05M005192 ORTHO05M006101 2.3e-08 63.5 206 22.8
Sspon.01G0036600-1B Saccharum spontaneum HOM05M005192 ORTHO05M006101 3.7e-06 56.2 169 24.9
GWHGAZTO001299 Oryza alta HOM05M005192 ORTHO05M006101 6.3e-06 55.5 103 29.1


User provided reference genes

Program Settings