Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g013400.3 Solanum lycopersicum HOM05M006661 ORTHO05M008353 4.7e-112 407.1 210 100.0
Glyma.13G117200 Glycine max HOM05M006661 ORTHO05M008353 3.6e-80 301.2 196 79.6
AT3G17590 Arabidopsis thaliana HOM05M006661 ORTHO05M008353 1.1e-79 299.7 196 76.5
Potri.010G004100 Populus trichocarpa HOM05M006661 ORTHO05M008353 3.3e-73 278.1 195 72.3
ATR0796G033 Amborella trichopoda HOM05M006661 ORTHO05M008353 8.1e-72 273.5 197 70.1
CALSI_Maker00043255 Calamus simplicifolius HOM05M006661 ORTHO05M008353 1.8e-71 272.3 195 71.8
CDE12G0513 Ceratophyllum demersum HOM05M006661 ORTHO05M008353 3.1e-71 271.6 195 68.2
Aco022099 Ananas comosus HOM05M006661 ORTHO05M008353 4.9e-69 264.2 194 69.1
Ma10_g02740 Musa acuminata HOM05M006661 ORTHO05M008353 6.4e-69 263.8 194 69.6
DDU526G0129 Dioscorea dumetorum HOM05M006661 ORTHO05M008353 3.5e-67 258.1 198 68.2
CALSI_Maker00019561 Calamus simplicifolius HOM05M006661 ORTHO05M008353 1.8e-63 245.7 214 60.7
Spipo6G0025600 Spirodela polyrhiza HOM05M006661 ORTHO05M008353 3.4e-62 241.5 195 63.6
Zosma01g39600 Zostera marina HOM05M006661 ORTHO05M008353 9.9e-62 240.0 193 61.7
Asa1G03826 Allium sativum HOM05M006661 ORTHO05M008353 1.3e-61 239.6 194 62.4
PH02Gene43714 Phyllostachys edulis HOM05M006661 ORTHO05M008353 2.9e-61 238.4 194 62.9
evm.TU.AsparagusV1_05.246.V1.1 Asparagus officinalis HOM05M006661 ORTHO05M008353 8.4e-61 236.9 194 61.3
OB05G12570 Oryza brachyantha HOM05M006661 ORTHO05M008353 9.3e-60 233.4 194 59.3
OsKitaake02g315500 Oryza sativa Kitaake HOM05M006661 ORTHO05M008353 2.7e-59 231.9 195 60.5
Os02g0723700 Oryza sativa ssp. japonica HOM05M006661 ORTHO05M008353 2.7e-59 231.9 195 60.5
OsR498G0204678100.01 Oryza sativa ssp. indica HOM05M006661 ORTHO05M008353 1.3e-58 229.6 195 60.0
Sspon.07G0013740-3D Saccharum spontaneum HOM05M006661 ORTHO05M008353 1.8e-58 229.2 190 61.6
GWHGAZTO020522 Oryza alta HOM05M006661 ORTHO05M008353 8.7e-58 226.9 195 59.5
Dexi3A01G0010610 Digitaria exilis HOM05M006661 ORTHO05M008353 1.1e-57 226.5 193 59.6
Pahal.3G111700 Panicum hallii HOM05M006661 ORTHO05M008353 1.1e-57 226.5 181 62.4
Seita.3G055500 Setaria italica HOM05M006661 ORTHO05M008353 1.5e-57 226.1 190 61.1
Sevir.3G056300 Setaria viridis HOM05M006661 ORTHO05M008353 1.9e-57 225.7 190 60.5
Dexi3B01G0010790 Digitaria exilis HOM05M006661 ORTHO05M008353 2.5e-57 225.3 190 60.5
Zm00001eb354530 Zea mays B73 HOM05M006661 ORTHO05M008353 3.3e-57 224.9 190 60.5
Zm00007a00014881 Zea mays B104 HOM05M006661 ORTHO05M008353 3.3e-57 224.9 190 60.5
Sobic.009G036200 Sorghum bicolor HOM05M006661 ORTHO05M008353 5.6e-57 224.2 190 60.5
GWHGAORA004393 Cenchrus purpureus HOM05M006661 ORTHO05M008353 1.3e-56 223.0 190 61.1
Misin17G058600 Miscanthus sinensis HOM05M006661 ORTHO05M008353 1.6e-56 222.6 190 60.0
TraesCS1A03G0200900 Triticum aestivum HOM05M006661 ORTHO05M008353 2.1e-56 222.2 190 58.9
TraesCS1D03G0192300 Triticum aestivum HOM05M006661 ORTHO05M008353 2.1e-56 222.2 190 58.9
TRIDC1AG011700 Triticum dicoccoides HOM05M006661 ORTHO05M008353 2.1e-56 222.2 190 58.9
TRIDC1BG014480 Triticum dicoccoides HOM05M006661 ORTHO05M008353 2.1e-56 222.2 190 58.9
TRITD1Av1G029770 Triticum turgidum HOM05M006661 ORTHO05M008353 2.1e-56 222.2 190 58.9
TRITD1Bv1G039160 Triticum turgidum HOM05M006661 ORTHO05M008353 2.1e-56 222.2 190 58.9
GWHGASIY001025 Secale cereale HOM05M006661 ORTHO05M008353 3.7e-56 221.5 190 58.4
GWHGAORA039456 Cenchrus purpureus HOM05M006661 ORTHO05M008353 6.2e-56 220.7 190 60.5
Horvu_MOREX_1H01G115700 Hordeum vulgare HOM05M006661 ORTHO05M008353 1.1e-55 219.9 190 57.4
Bradi2g36760 Brachypodium distachyon HOM05M006661 ORTHO05M008353 1.8e-55 219.2 189 57.7
V3.Lp_chr1_0G2938 Lolium perenne HOM05M006661 ORTHO05M008353 2.4e-55 218.8 190 58.9
Misin16G050600 Miscanthus sinensis HOM05M006661 ORTHO05M008353 2.4e-55 218.8 181 61.3
Ot_Chr5_g15477 Oropetium thomaeum HOM05M006661 ORTHO05M008353 5.3e-55 217.6 190 60.0
TraesCS1B03G0269600 Triticum aestivum HOM05M006661 ORTHO05M008353 9.0e-55 216.9 190 58.9
Zjn_sc00016.1.g04740.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M006661 ORTHO05M008353 9.0e-55 216.9 193 58.0
EJB05_33985 Eragrostis curvula HOM05M006661 ORTHO05M008353 1.2e-54 216.5 190 60.0
EJB05_33998 Eragrostis curvula HOM05M006661 ORTHO05M008353 1.2e-54 216.5 190 60.0
GWHGAZTO072163 Oryza alta HOM05M006661 ORTHO05M008353 6.0e-51 204.1 164 63.4
Mapoly0059s0054 Marchantia polymorpha HOM05M006661 ORTHO05M008353 7.9e-51 203.8 196 53.6
SMO358G0571 Selaginella moellendorffii HOM05M006661 ORTHO05M008353 7.4e-49 197.2 189 54.5
PH02Gene04305 Phyllostachys edulis HOM05M006661 ORTHO05M008353 9.6e-49 196.8 205 53.7
AagrBONN_evm.TU.Sc2ySwM_228.3212 Anthoceros agrestis HOM05M006661 ORTHO05M008353 4.0e-47 191.4 196 50.0
Sspon.07G0013740-2B Saccharum spontaneum HOM05M006661 ORTHO05M008353 3.4e-46 188.3 190 55.3
CALSI_Maker00043252 Calamus simplicifolius HOM05M006661 ORTHO05M008353 1.9e-44 182.6 113 77.0
Sspon.07G0013750-1A Saccharum spontaneum HOM05M006661 ORTHO05M008353 2.5e-44 182.2 186 54.8
HPP92_002633 Vanilla planifolia HOM05M006661 ORTHO05M008353 6.0e-43 177.6 115 72.2
CBR_g38190 Chara braunii HOM05M006661 ORTHO05M008353 7.4e-41 170.6 185 51.4
SEGI_01321 Sequoiadendron giganteum HOM05M006661 ORTHO05M008353 4.8e-40 167.9 128 68.0
Glyma.09G159500 Glycine max HOM05M006661 ORTHO05M008353 4.8e-32 141.4 164 49.4
Sspon.07G0013740-1A Saccharum spontaneum HOM05M006661 ORTHO05M008353 8.8e-26 120.6 118 55.9
MBI18_g03841_MAGBIO Magnolia biondii HOM05M004298 ORTHO05M005941 1.5e-25 119.8 71 77.5
p5.00_sc00833_p0001 Elaeis guineensis HOM05M006661 ORTHO05M008353 9.7e-17 90.5 84 60.7
Glyma.17G042702 Glycine max HOM05M006661 ORTHO05M008353 1.1e-07 60.5 33 87.9


User provided reference genes

Program Settings