Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g012640.1 Solanum lycopersicum HOM05M007904 ORTHO05M010068 8.4e-94 346.3 179 100.0
Potri.006G017500 Populus trichocarpa HOM05M007904 ORTHO05M010068 8.5e-38 160.2 180 48.3
MBI19_g37436_MAGBIO Magnolia biondii HOM05M007904 ORTHO05M010068 4.7e-36 154.5 109 66.1
AT4G16410 Arabidopsis thaliana HOM05M007904 ORTHO05M010068 1.8e-35 152.5 105 72.4
Ma06_g26290 Musa acuminata HOM05M007904 ORTHO05M010068 3.0e-35 151.8 124 59.7
Asa4G01618 Allium sativum HOM05M007904 ORTHO05M010068 4.0e-35 151.4 172 48.3
CALSI_Maker00024450 Calamus simplicifolius HOM05M007904 ORTHO05M010068 2.0e-34 149.1 171 49.1
evm.TU.AsparagusV1_03.2545.V1.1 Asparagus officinalis HOM05M007904 ORTHO05M010068 4.4e-34 147.9 114 61.4
p5.00_sc00011_p0071 Elaeis guineensis HOM05M007904 ORTHO05M010068 1.3e-33 146.4 106 65.1
ATR0624G051 Amborella trichopoda HOM05M007904 ORTHO05M010068 1.7e-33 146.0 105 64.8
Glyma.17G007100 Glycine max HOM05M007904 ORTHO05M010068 3.7e-33 144.8 156 50.0
HPP92_007730 Vanilla planifolia HOM05M007904 ORTHO05M010068 6.3e-33 144.1 177 44.6
Asa4G01607 Allium sativum HOM05M007904 ORTHO05M010068 1.3e-30 136.3 86 72.1
TraesCS7A03G0377600 Triticum aestivum HOM05M007904 ORTHO05M010068 1.2e-28 129.8 102 59.8
TraesCS7D03G0362100 Triticum aestivum HOM05M007904 ORTHO05M010068 1.2e-28 129.8 102 59.8
TraesCS7B03G0176400 Triticum aestivum HOM05M007904 ORTHO05M010068 2.1e-28 129.0 165 44.8
Spipo20G0035700 Spirodela polyrhiza HOM05M007904 ORTHO05M010068 3.6e-28 128.3 81 71.6
V3.Lp_chr7_0.1G1738 Lolium perenne HOM05M005678 ORTHO05M007309 6.1e-28 127.5 115 54.8
Bradi1g46622 Brachypodium distachyon HOM05M007904 ORTHO05M010068 1.4e-27 126.3 102 59.8
Glyma.07G267200 Glycine max HOM05M007904 ORTHO05M010068 1.4e-27 126.3 105 61.9
CDE02G4560 Ceratophyllum demersum HOM05M007904 ORTHO05M010068 3.0e-27 125.2 109 58.7
Zosma06g10130 Zostera marina HOM05M007904 ORTHO05M010068 3.0e-27 125.2 115 54.8
PH02Gene51217 Phyllostachys edulis HOM05M007904 ORTHO05M010068 6.8e-27 124.0 171 44.4
GWHGAORA064035 Cenchrus purpureus HOM05M007904 ORTHO05M010068 8.8e-27 123.6 102 59.8
Seita.2G384600 Setaria italica HOM05M007904 ORTHO05M010068 8.8e-27 123.6 102 59.8
Sevir.2G395000 Setaria viridis HOM05M007904 ORTHO05M010068 8.8e-27 123.6 102 59.8
Zm00001eb280810 Zea mays B73 HOM05M007904 ORTHO05M010068 1.2e-26 123.2 102 58.8
Zm00007a00031863 Zea mays B104 HOM05M007904 ORTHO05M010068 1.2e-26 123.2 102 58.8
Misin19G122700 Miscanthus sinensis HOM05M007904 ORTHO05M010068 2.0e-26 122.5 102 57.8
Misin19G136100 Miscanthus sinensis HOM05M007904 ORTHO05M010068 2.0e-26 122.5 102 57.8
Pahal.2G442300 Panicum hallii HOM05M007904 ORTHO05M010068 2.0e-26 122.5 102 57.8
Sspon.08G0027170-1C Saccharum spontaneum HOM05M007904 ORTHO05M010068 2.0e-26 122.5 102 57.8
Sspon.08G0027170-1P Saccharum spontaneum HOM05M007904 ORTHO05M010068 2.0e-26 122.5 102 57.8
Zm00001eb380530 Zea mays B73 HOM05M007904 ORTHO05M010068 2.0e-26 122.5 102 58.8
Zm00007a00010802 Zea mays B104 HOM05M007904 ORTHO05M010068 2.0e-26 122.5 102 58.8
PH02Gene10556 Phyllostachys edulis HOM05M007904 ORTHO05M010068 3.4e-26 121.7 102 58.8
PH02Gene16522 Phyllostachys edulis HOM05M007904 ORTHO05M010068 4.4e-26 121.3 100 60.0
Zjn_sc00001.1.g04110.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M007904 ORTHO05M010068 5.7e-26 120.9 103 59.2
Ot_Chr7_g16803 Oropetium thomaeum HOM05M007904 ORTHO05M010068 1.3e-25 119.8 104 59.6
EJB05_11352 Eragrostis curvula HOM05M000430 ORTHO05M000064 8.3e-25 117.1 102 57.8
Dexi2B01G0031590 Digitaria exilis HOM05M007904 ORTHO05M010068 1.8e-24 115.9 103 56.3
GWHGAZTO044962 Oryza alta HOM05M007904 ORTHO05M010068 1.8e-24 115.9 103 53.4
GWHGAZTO044963 Oryza alta HOM05M007904 ORTHO05M010068 1.8e-24 115.9 103 53.4
Sobic.010G116500 Sorghum bicolor HOM05M007904 ORTHO05M010068 2.4e-24 115.5 105 57.1
Dexi2A01G0032830 Digitaria exilis HOM05M007904 ORTHO05M010068 3.1e-24 115.2 103 56.3
GWHGAZTO092487 Oryza alta HOM05M007904 ORTHO05M010068 9.1e-24 113.6 103 51.5
SEGI_39039 Sequoiadendron giganteum HOM05M007904 ORTHO05M010068 1.6e-23 112.8 126 45.2
Sspon.08G0027170-2D Saccharum spontaneum HOM05M007904 ORTHO05M010068 7.7e-23 110.5 102 54.9
Mapoly0009s0214 Marchantia polymorpha HOM05M007904 ORTHO05M010068 1.5e-21 106.3 82 52.4
OsKitaake07g223500 Oryza sativa Kitaake HOM05M007904 ORTHO05M010068 4.7e-20 101.3 76 60.5
Os07g0607200 Oryza sativa ssp. japonica HOM05M007904 ORTHO05M010068 4.7e-20 101.3 76 60.5
Pp3c8_24380 Physcomitrium patens HOM05M007904 ORTHO05M010068 1.4e-19 99.8 107 46.7
Misin18G124300 Miscanthus sinensis HOM05M007904 ORTHO05M010068 5.7e-18 94.4 109 47.7
CBR_g31098 Chara braunii HOM05M000008 ORTHO05M000015 2.8e-17 92.0 90 48.9


User provided reference genes

Program Settings