Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g011760.3 Solanum lycopersicum HOM05M004508 ORTHO05M005250 1.0e-118 429.5 237 100.0
Potri.004G082300 Populus trichocarpa HOM05M004508 ORTHO05M005250 6.8e-51 204.1 194 61.3
CALSI_Maker00036409 Calamus simplicifolius HOM05M004508 ORTHO05M005250 5.8e-50 201.1 191 60.2
Glyma.18G042900 Glycine max HOM05M004508 ORTHO05M005250 8.3e-49 197.2 187 58.8
Aco001014 Ananas comosus HOM05M004508 ORTHO05M005250 2.3e-46 189.1 164 67.7
V3.Lp_chr7_0.1G5684 Lolium perenne HOM05M004508 ORTHO05M005250 6.6e-46 187.6 230 50.0
Glyma.11G213800 Glycine max HOM05M004508 ORTHO05M005250 1.9e-45 186.0 211 51.7
DexiUA01G0023530 Digitaria exilis HOM05M004508 ORTHO05M005250 2.5e-45 185.7 212 50.0
Ma03_g07510 Musa acuminata HOM05M004508 ORTHO05M005250 2.5e-45 185.7 191 56.5
Spipo4G0004000 Spirodela polyrhiza HOM05M004508 ORTHO05M005250 3.3e-45 185.3 192 57.3
Horvu_MOREX_3H01G645800 Hordeum vulgare HOM05M004508 ORTHO05M005250 7.3e-45 184.1 186 54.3
PH02Gene29478 Phyllostachys edulis HOM05M004508 ORTHO05M005250 7.3e-45 184.1 209 52.6
Sobic.007G131900 Sorghum bicolor HOM05M004508 ORTHO05M005250 7.3e-45 184.1 204 51.5
GWHGAZTO048559 Oryza alta HOM05M004508 ORTHO05M005250 2.8e-44 182.2 194 52.6
MBI13_g35399_MAGBIO Magnolia biondii HOM05M004508 ORTHO05M005250 3.6e-44 181.8 229 53.3
Misin07G308900 Miscanthus sinensis HOM05M004508 ORTHO05M005250 3.6e-44 181.8 202 50.5
Sspon.06G0006230-1A Saccharum spontaneum HOM05M004508 ORTHO05M005250 3.6e-44 181.8 213 49.3
Zjn_sc00091.1.g01010.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M004508 ORTHO05M005250 3.6e-44 181.8 212 47.6
TraesCS3B03G1323700 Triticum aestivum HOM05M004508 ORTHO05M005250 4.7e-44 181.4 224 47.3
TRITD3Bv1G260000 Triticum turgidum HOM05M004508 ORTHO05M005250 4.7e-44 181.4 224 47.3
OB08G22760 Oryza brachyantha HOM05M004508 ORTHO05M005250 6.2e-44 181.0 206 51.9
Sspon.06G0006230-2B Saccharum spontaneum HOM05M004508 ORTHO05M005250 6.2e-44 181.0 213 49.3
Sspon.06G0006230-4D Saccharum spontaneum HOM05M004508 ORTHO05M005250 8.1e-44 180.6 213 49.3
Sspon.06G0006230-3C Saccharum spontaneum HOM05M004508 ORTHO05M005250 1.1e-43 180.3 213 48.8
TraesCS3A03G1137700 Triticum aestivum HOM05M004508 ORTHO05M005250 1.1e-43 180.3 186 53.2
TRITD3Av1G265810 Triticum turgidum HOM05M004508 ORTHO05M005250 1.1e-43 180.3 186 53.2
Misin13G106900 Miscanthus sinensis HOM05M004508 ORTHO05M005250 1.4e-43 179.9 201 50.7
OsKitaake08g158100 Oryza sativa Kitaake HOM05M004508 ORTHO05M005250 1.8e-43 179.5 205 50.7
PH02Gene40480 Phyllostachys edulis HOM05M004508 ORTHO05M005250 1.8e-43 179.5 187 51.9
AET3Gv21105000 Aegilops tauschii HOM05M004508 ORTHO05M005250 5.2e-43 177.9 188 52.7
TraesCS3D03G1058900 Triticum aestivum HOM05M004508 ORTHO05M005250 5.2e-43 177.9 188 52.7
Zjn_sc00015.1.g01080.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M004508 ORTHO05M005250 1.2e-42 176.8 214 48.1
EJB05_48983 Eragrostis curvula HOM05M004508 ORTHO05M005250 1.5e-42 176.4 211 48.8
GWHGASIY034508 Secale cereale HOM05M004508 ORTHO05M005250 1.5e-42 176.4 187 52.4
Ot_Chr9_g02288 Oropetium thomaeum HOM05M004508 ORTHO05M005250 2.0e-42 176.0 182 52.7
OsR498G0816112800.01 Oryza sativa ssp. indica HOM05M004508 ORTHO05M005250 2.6e-42 175.6 205 49.8
Pahal.6G203400 Panicum hallii HOM05M004508 ORTHO05M005250 3.4e-42 175.3 191 51.8
Zm00001eb179280 Zea mays B73 HOM05M004508 ORTHO05M005250 3.4e-42 175.3 214 49.1
Zm00007a00037576 Zea mays B104 HOM05M004508 ORTHO05M005250 3.4e-42 175.3 214 49.1
Zm00001eb041900 Zea mays B73 HOM05M004508 ORTHO05M005250 8.3e-41 170.6 199 48.7
Zm00007a00015782 Zea mays B104 HOM05M004508 ORTHO05M005250 8.3e-41 170.6 199 48.7
HPP92_017642 Vanilla planifolia HOM05M004508 ORTHO05M005250 1.1e-40 170.2 173 56.1
TRIDC3AG068250 Triticum dicoccoides HOM05M004508 ORTHO05M005250 2.4e-40 169.1 153 60.8
evm.TU.AsparagusV1_08.2877.V1.1 Asparagus officinalis HOM05M004508 ORTHO05M005250 2.1e-39 166.0 202 53.0
AT5G16550 Arabidopsis thaliana HOM05M004508 ORTHO05M005250 4.6e-39 164.9 216 47.7
Sevir.6G158700 Setaria viridis HOM05M004508 ORTHO05M005250 1.3e-38 163.3 189 49.7
Seita.6G152500 Setaria italica HOM05M004508 ORTHO05M005250 2.3e-38 162.5 189 49.2
Ma02_g20570 Musa acuminata HOM05M004508 ORTHO05M005250 7.3e-37 157.5 225 45.8
TRIDC3BG077290 Triticum dicoccoides HOM05M004508 ORTHO05M005250 7.3e-37 157.5 141 61.0
CDE11G1189 Ceratophyllum demersum HOM05M004508 ORTHO05M005250 3.6e-36 155.2 201 49.3
Glyma.02G242200 Glycine max HOM05M004508 ORTHO05M005250 1.1e-35 153.7 171 50.3
CDE05G2820 Ceratophyllum demersum HOM05M004508 ORTHO05M005250 5.2e-35 151.4 221 46.2
Asa4G00763 Allium sativum HOM05M004508 ORTHO05M005250 8.9e-35 150.6 197 46.7
p5.00_sc00260_p0002 Elaeis guineensis HOM05M004508 ORTHO05M005250 8.9e-35 150.6 150 60.7
Zosma03g33140 Zostera marina HOM05M004508 ORTHO05M005250 2.6e-34 149.1 213 44.6
DDU550G0799 Dioscorea dumetorum HOM05M004508 ORTHO05M005250 1.6e-31 139.8 148 58.8
GWHGAORA036405 Cenchrus purpureus HOM05M004508 ORTHO05M005250 7.8e-31 137.5 120 63.3
GWHGAORA002167 Cenchrus purpureus HOM05M004508 ORTHO05M005250 2.5e-29 132.5 120 62.5
Bradi3g36250 Brachypodium distachyon HOM05M004508 ORTHO05M005250 4.3e-29 131.7 230 42.6
EJB05_42924 Eragrostis curvula HOM05M004508 ORTHO05M005250 3.1e-27 125.6 181 45.3
Zm00007a00026288 Zea mays B104 HOM05M004508 ORTHO05M005250 4.9e-25 118.2 139 48.2
Seita.2G197000 Setaria italica HOM05M004508 ORTHO05M005250 1.4e-24 116.7 145 47.6
Sevir.2G204600 Setaria viridis HOM05M004508 ORTHO05M005250 1.4e-24 116.7 145 47.6
Mapoly0035s0070 Marchantia polymorpha HOM05M004508 ORTHO05M005250 2.4e-24 115.9 220 35.0
Pahal.2G255700 Panicum hallii HOM05M004508 ORTHO05M005250 3.5e-23 112.1 148 45.3
V3.Lp_chr5_0G12382 Lolium perenne HOM05M004508 ORTHO05M005250 3.9e-22 108.6 127 50.4
AagrBONN_evm.TU.Sc2ySwM_117.2252 Anthoceros agrestis HOM05M004508 ORTHO05M005250 4.8e-20 101.7 172 34.9
CALSI_Maker00025934 Calamus simplicifolius HOM05M004508 ORTHO05M005250 1.4e-19 100.1 104 58.7
Zm00001eb099130 Zea mays B73 HOM05M004508 ORTHO05M005250 9.9e-18 94.0 110 51.8
Zjn_sc00018.1.g06610.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M004508 ORTHO05M005250 1.3e-17 93.6 111 55.0
Sobic.002G194300 Sorghum bicolor HOM05M004508 ORTHO05M005250 2.9e-17 92.4 137 43.8
Bradi4g29691 Brachypodium distachyon HOM05M004508 ORTHO05M005250 3.8e-17 92.0 118 47.5
TraesCS5D03G0491100 Triticum aestivum HOM05M004508 ORTHO05M005250 3.8e-17 92.0 126 42.1
Pp3c25_6290 Physcomitrium patens HOM05M004508 ORTHO05M005250 1.1e-16 90.5 156 41.0
TraesCS5A03G0526100 Triticum aestivum HOM05M004508 ORTHO05M005250 5.4e-16 88.2 126 41.3
Pp3c6_9570 Physcomitrium patens HOM05M004508 ORTHO05M005250 9.6e-13 77.4 149 33.6
SEGI_39153 Sequoiadendron giganteum HOM05M004508 ORTHO05M005250 1.1e-11 73.9 114 43.9
TraesCS5B03G0537600 Triticum aestivum HOM05M004508 ORTHO05M005250 1.1e-11 73.9 126 40.5
GWHGAZTO097642 Oryza alta HOM05M004508 ORTHO05M005250 3.8e-09 65.5 120 45.8


User provided reference genes

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