Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g011470.2 Solanum lycopersicum HOM05M002778 ORTHO05M005786 0.0e+00 1461.0 740 100.0
Potri.004G082800 Populus trichocarpa HOM05M002778 ORTHO05M005786 0.0e+00 1264.6 741 83.5
Potri.017G136133 Populus trichocarpa HOM05M002778 ORTHO05M005786 0.0e+00 1260.4 740 83.4
Glyma.11G214800 Glycine max HOM05M002778 ORTHO05M005786 0.0e+00 1252.7 747 82.5
Glyma.18G041700 Glycine max HOM05M002778 ORTHO05M005786 0.0e+00 1250.0 748 82.1
DDU550G0790 Dioscorea dumetorum HOM05M002778 ORTHO05M005786 0.0e+00 1234.9 721 83.5
p5.00_sc00058_p0064 Elaeis guineensis HOM05M002778 ORTHO05M005786 0.0e+00 1205.3 722 81.6
Ma02_g08640 Musa acuminata HOM05M002778 ORTHO05M005786 0.0e+00 1204.5 729 80.5
CALSI_Maker00046255 Calamus simplicifolius HOM05M002778 ORTHO05M005786 0.0e+00 1203.3 720 81.5
Zm00001eb216210 Zea mays B73 HOM05M002778 ORTHO05M005786 0.0e+00 1203.3 740 80.4
Zm00007a00003168 Zea mays B104 HOM05M002778 ORTHO05M005786 0.0e+00 1203.3 740 80.4
Sspon.01G0026900-1A Saccharum spontaneum HOM05M002778 ORTHO05M005786 0.0e+00 1202.6 744 80.0
Zm00001eb055050 Zea mays B73 HOM05M002778 ORTHO05M005786 0.0e+00 1202.6 746 80.4
Zm00007a00006805 Zea mays B104 HOM05M002778 ORTHO05M005786 0.0e+00 1202.6 746 80.4
Sobic.001G115700 Sorghum bicolor HOM05M002778 ORTHO05M005786 0.0e+00 1202.2 746 80.0
Misin01G105800 Miscanthus sinensis HOM05M002778 ORTHO05M005786 0.0e+00 1199.1 746 80.0
Ma01_g15640 Musa acuminata HOM05M002778 ORTHO05M005786 0.0e+00 1197.6 735 79.5
AT5G37510 Arabidopsis thaliana HOM05M002778 ORTHO05M005786 0.0e+00 1196.8 746 79.1
Misin02G093500 Miscanthus sinensis HOM05M002778 ORTHO05M005786 0.0e+00 1196.8 746 79.6
Sspon.01G0026900-2C Saccharum spontaneum HOM05M002778 ORTHO05M005786 0.0e+00 1196.8 746 79.8
OsKitaake03g313600 Oryza sativa Kitaake HOM05M002778 ORTHO05M005786 0.0e+00 1196.4 723 81.6
OsR498G0306922600.01 Oryza sativa ssp. indica HOM05M002778 ORTHO05M005786 0.0e+00 1196.4 723 81.6
Os03g0713400 Oryza sativa ssp. japonica HOM05M002778 ORTHO05M005786 0.0e+00 1196.4 723 81.6
Bradi1g11520 Brachypodium distachyon HOM05M002778 ORTHO05M005786 0.0e+00 1194.9 744 79.4
GWHGAZTO026340 Oryza alta HOM05M002778 ORTHO05M005786 0.0e+00 1193.7 740 80.1
Dexi9B01G0010850 Digitaria exilis HOM05M002778 ORTHO05M005786 0.0e+00 1193.3 746 79.4
Sevir.9G116500 Setaria viridis HOM05M002778 ORTHO05M005786 0.0e+00 1193.3 746 79.4
Seita.9G117800 Setaria italica HOM05M002778 ORTHO05M005786 0.0e+00 1192.2 746 79.2
Pahal.9G115500 Panicum hallii HOM05M002778 ORTHO05M005786 0.0e+00 1191.8 746 79.4
p5.00_sc00001_p0666 Elaeis guineensis HOM05M002778 ORTHO05M005786 0.0e+00 1191.4 745 79.1
Dexi9A01G0011310 Digitaria exilis HOM05M002778 ORTHO05M005786 0.0e+00 1190.3 746 79.2
Ot_Chr4_g08001 Oropetium thomaeum HOM05M002778 ORTHO05M005786 0.0e+00 1189.5 741 79.8
PH02Gene35798 Phyllostachys edulis HOM05M002778 ORTHO05M005786 0.0e+00 1189.5 745 79.2
Spipo20G0014500 Spirodela polyrhiza HOM05M002778 ORTHO05M005786 0.0e+00 1188.3 738 79.4
PH02Gene09900 Phyllostachys edulis HOM05M002778 ORTHO05M005786 0.0e+00 1185.6 745 79.2
V3.Lp_chr4_0G6900 Lolium perenne HOM05M002778 ORTHO05M005786 0.0e+00 1184.9 715 80.7
EJB05_04876 Eragrostis curvula HOM05M002778 ORTHO05M005786 0.0e+00 1184.5 742 78.8
GWHGASIY018390 Secale cereale HOM05M002778 ORTHO05M005786 0.0e+00 1183.7 726 80.6
GWHGASIY042856 Secale cereale HOM05M002778 ORTHO05M005786 0.0e+00 1183.7 726 80.6
AET4Gv20097200 Aegilops tauschii HOM05M002778 ORTHO05M005786 0.0e+00 1182.9 726 80.9
TraesCS4D03G0085800 Triticum aestivum HOM05M002778 ORTHO05M005786 0.0e+00 1182.9 726 80.9
TraesCS4B03G0103300 Triticum aestivum HOM05M002778 ORTHO05M005786 0.0e+00 1182.5 743 79.7
TRITD4Bv1G014060 Triticum turgidum HOM05M002778 ORTHO05M005786 0.0e+00 1182.5 743 79.7
TraesCS4A03G0691800 Triticum aestivum HOM05M002778 ORTHO05M005786 0.0e+00 1181.8 725 80.6
Horvu_MOREX_4H01G048400 Hordeum vulgare HOM05M002778 ORTHO05M005786 0.0e+00 1176.4 726 80.3
GWHGAZTO076257 Oryza alta HOM05M002778 ORTHO05M005786 0.0e+00 1176.4 748 78.6
HPP92_020298 Vanilla planifolia HOM05M002778 ORTHO05M005786 0.0e+00 1174.8 735 78.4
GWHGAORA019382 Cenchrus purpureus HOM05M002778 ORTHO05M005786 0.0e+00 1173.3 692 82.2
Aco022481 Ananas comosus HOM05M002778 ORTHO05M005786 0.0e+00 1167.1 740 77.3
CDE05G1320 Ceratophyllum demersum HOM05M002778 ORTHO05M005786 0.0e+00 1165.2 738 77.8
Asa1G02924 Allium sativum HOM05M002778 ORTHO05M005786 0.0e+00 1161.4 739 77.5
Zosma03g35810 Zostera marina HOM05M002778 ORTHO05M005786 0.0e+00 1156.0 718 77.9
TRIDC4BG007500 Triticum dicoccoides HOM05M002778 ORTHO05M005786 0.0e+00 1152.1 673 83.4
TRIDC4AG041600 Triticum dicoccoides HOM05M002778 ORTHO05M005786 0.0e+00 1147.1 668 83.2
evm.TU.AsparagusV1_08.2872.V1.1 Asparagus officinalis HOM05M002778 ORTHO05M005786 0.0e+00 1121.7 659 82.4
CDE05G1041 Ceratophyllum demersum HOM05M002778 ORTHO05M005786 0.0e+00 1101.7 738 74.0
ATR0118G003 Amborella trichopoda HOM05M002778 ORTHO05M005786 0.0e+00 1101.3 731 75.0
MBI19_g09384_MAGBIO Magnolia biondii HOM05M002778 ORTHO05M005786 0.0e+00 1093.2 1058 56.8
OB03G38880 Oryza brachyantha HOM05M002778 ORTHO05M005786 6.0e-311 1069.7 628 83.0
Zjn_sc00014.1.g02010.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M002778 ORTHO05M005786 9.2e-288 992.6 717 71.3
GWHGAORA051213 Cenchrus purpureus HOM05M002778 ORTHO05M005786 1.1e-283 979.2 692 72.0
Pp3c1_34100 Physcomitrium patens HOM05M002778 ORTHO05M005786 4.9e-281 970.3 676 69.8
Pp3c1_34110 Physcomitrium patens HOM05M002778 ORTHO05M005786 4.9e-281 970.3 676 69.8
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05M002778 ORTHO05M005786 1.9e-280 968.4 677 69.3
SMO331G0029 Selaginella moellendorffii HOM05M002778 ORTHO05M005786 1.9e-280 968.4 679 67.0
Pp3c1_34140 Physcomitrium patens HOM05M002778 ORTHO05M005786 2.4e-280 968.0 676 69.7
Pp3c19_19270 Physcomitrium patens HOM05M002778 ORTHO05M005786 7.8e-279 963.0 674 69.1
Mapoly0153s0030 Marchantia polymorpha HOM05M002778 ORTHO05M005786 5.1e-278 960.3 676 69.2
GWHGAORA051235 Cenchrus purpureus HOM05M002778 ORTHO05M005786 7.8e-271 936.4 687 70.0
CALSI_Maker00040866 Calamus simplicifolius HOM05M002778 ORTHO05M005786 9.3e-256 886.3 726 64.0
CBR_g6354 Chara braunii HOM05M002778 ORTHO05M005786 7.6e-250 866.7 678 61.4
GWHGAORA018514 Cenchrus purpureus HOM05M002778 ORTHO05M005786 1.8e-246 855.5 747 63.1
Cre12.g535950 Chlamydomonas reinhardtii HOM05M002778 ORTHO05M005786 1.1e-232 809.7 679 59.4
MCO08G340 Micromonas commoda HOM05M002778 ORTHO05M005786 6.5e-225 783.9 692 57.9
PRCOL_00000346 Prasinoderma coloniale HOM05M002778 ORTHO05M005786 1.5e-216 756.1 677 58.5
GWHGAZTO076290 Oryza alta HOM05M002778 ORTHO05M005786 2.1e-191 672.5 603 59.7
Potri.017G136950 Populus trichocarpa HOM05M002778 ORTHO05M005786 2.6e-109 399.8 237 82.3
SEGI_21193 Sequoiadendron giganteum HOM05M002778 ORTHO05M001164 6.4e-63 245.7 144 81.9
PH02Gene09034 Phyllostachys edulis HOM05M002778 ORTHO05M005786 1.4e-62 244.6 193 64.2
PH02Gene51483 Phyllostachys edulis HOM05M002778 ORTHO05M005786 2.4e-62 243.8 183 66.7
Zosma07g02600 Zostera marina HOM05M002778 ORTHO05M005786 3.4e-48 196.8 288 36.5
SEGI_05320 Sequoiadendron giganteum HOM05M002778 ORTHO05M005786 4.1e-46 189.9 146 67.8
SEGI_04560 Sequoiadendron giganteum HOM05M002778 ORTHO05M005786 3.6e-42 176.8 144 64.6
PH02Gene23488 Phyllostachys edulis HOM05M002778 ORTHO05M005786 1.4e-41 174.9 133 62.4
Zjn_sc05423.1.g00010.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M002778 ORTHO05M005786 1.0e-36 158.7 93 82.8
CBR_g44347 Chara braunii HOM05M002778 ORTHO05M090861 1.4e-33 148.3 141 51.8
GWHGAORA060295 Cenchrus purpureus HOM05M002778 ORTHO05M005786 3.1e-33 147.1 79 86.1
CBR_g26339 Chara braunii HOM05M005006 ORTHO05M006102 9.9e-24 115.5 220 30.9
Asa5G04879 Allium sativum HOM05M002778 ORTHO05M039989 1.5e-16 91.7 129 45.0
Asa2G05147 Allium sativum HOM05M002778 ORTHO05M000267 6.5e-15 86.3 107 40.2
SEGI_40032 Sequoiadendron giganteum HOM05M002778 ORTHO05M239146 6.7e-12 76.3 42 85.7


User provided reference genes

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