Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g011460.2 Solanum lycopersicum HOM05M002591 ORTHO05M002977 0.0e+00 1579.7 765 100.0
MBI05_g08280_MAGBIO Magnolia biondii HOM05M002591 ORTHO05M002977 2.8e-303 1044.3 754 69.4
Potri.017G081900 Populus trichocarpa HOM05M002591 ORTHO05M002977 2.3e-302 1041.2 662 75.4
MBI06_g06491_MAGBIO Magnolia biondii HOM05M002591 ORTHO05M002977 6.8e-302 1039.6 670 75.7
Glyma.13G063500 Glycine max HOM05M002591 ORTHO05M002977 3.1e-294 1014.2 638 76.0
Glyma.19G021800 Glycine max HOM05M002591 ORTHO05M002977 3.1e-294 1014.2 693 71.0
ATR0564G515 Amborella trichopoda HOM05M002591 ORTHO05M002977 2.4e-291 1004.6 671 71.2
CDE07G1280 Ceratophyllum demersum HOM05M002591 ORTHO05M002977 3.1e-286 987.6 735 66.3
AT5G39840 Arabidopsis thaliana HOM05M002591 ORTHO05M002977 4.0e-286 987.3 615 74.6
CDE04G1324 Ceratophyllum demersum HOM05M002591 ORTHO05M002977 5.8e-285 983.4 745 65.5
CALSI_Maker00032471 Calamus simplicifolius HOM05M002591 ORTHO05M002977 2.6e-277 958.0 607 74.5
Ma10_g29780 Musa acuminata HOM05M002591 ORTHO05M002977 2.3e-273 944.9 614 72.1
DDU033G0014 Dioscorea dumetorum HOM05M002591 ORTHO05M002977 2.5e-272 941.4 651 71.0
HPP92_004328 Vanilla planifolia HOM05M002591 ORTHO05M002977 5.6e-272 940.3 621 71.5
p5.00_sc00035_p0057 Elaeis guineensis HOM05M002591 ORTHO05M002977 1.6e-271 938.7 592 74.2
DDU049G0210 Dioscorea dumetorum HOM05M002591 ORTHO05M002977 4.7e-271 937.2 619 73.5
Spipo0G0053900 Spirodela polyrhiza HOM05M002591 ORTHO05M002977 1.0e-257 892.9 627 67.5
Asa1G02076 Allium sativum HOM05M002591 ORTHO05M002977 2.8e-255 884.8 606 70.0
Asa6G03815 Allium sativum HOM05M002591 ORTHO05M002977 1.2e-253 879.4 601 69.4
SEGI_33056 Sequoiadendron giganteum HOM05M002591 ORTHO05M002977 2.0e-253 878.6 635 65.4
Sobic.006G106300 Sorghum bicolor HOM05M002591 ORTHO05M002977 3.5e-250 867.8 632 65.5
TRITD2Av1G198970 Triticum turgidum HOM05M002591 ORTHO05M002977 6.0e-250 867.1 631 65.6
TRIDC2AG047430 Triticum dicoccoides HOM05M002591 ORTHO05M002977 7.9e-250 866.7 631 65.6
AET2Gv20734500 Aegilops tauschii HOM05M002591 ORTHO05M002977 1.8e-249 865.5 611 67.3
TraesCS2D03G0745200 Triticum aestivum HOM05M002591 ORTHO05M002977 1.8e-249 865.5 611 67.3
Misin12G105500 Miscanthus sinensis HOM05M002591 ORTHO05M002977 2.3e-249 865.1 632 65.3
Sspon.05G0009940-3D Saccharum spontaneum HOM05M002591 ORTHO05M002977 3.9e-249 864.4 632 65.0
OB04G22230 Oryza brachyantha HOM05M002591 ORTHO05M002977 5.1e-249 864.0 633 65.2
PH02Gene10054 Phyllostachys edulis HOM05M002591 ORTHO05M002977 6.7e-249 863.6 605 68.1
TraesCS2B03G0890000 Triticum aestivum HOM05M002591 ORTHO05M002977 6.7e-249 863.6 623 65.8
TRIDC2BG049940 Triticum dicoccoides HOM05M002591 ORTHO05M002977 6.7e-249 863.6 610 67.2
TRITD2Bv1G162220 Triticum turgidum HOM05M002591 ORTHO05M002977 6.7e-249 863.6 623 65.8
Sspon.05G0009940-2C Saccharum spontaneum HOM05M002591 ORTHO05M002977 8.7e-249 863.2 632 65.0
Horvu_MOREX_2H01G480400 Hordeum vulgare HOM05M002591 ORTHO05M002977 1.1e-248 862.8 625 65.8
GWHGASIY009165 Secale cereale HOM05M002591 ORTHO05M002977 2.5e-248 861.7 611 66.8
Ot_Chr6_g20699 Oropetium thomaeum HOM05M002591 ORTHO05M002977 7.4e-248 860.1 611 66.8
GWHGAZTO029914 Oryza alta HOM05M002591 ORTHO05M002977 9.6e-248 859.8 634 65.3
GWHGAZTO079608 Oryza alta HOM05M002591 ORTHO05M002977 1.3e-247 859.4 608 66.8
Pahal.7G177200 Panicum hallii HOM05M002591 ORTHO05M002977 1.4e-246 855.9 606 67.3
EJB05_37700 Eragrostis curvula HOM05M002591 ORTHO05M002977 1.8e-246 855.5 598 67.7
EJB05_37633 Eragrostis curvula HOM05M002591 ORTHO05M002977 5.3e-246 854.0 598 67.6
Sevir.7G132100 Setaria viridis HOM05M002591 ORTHO05M002977 5.3e-246 854.0 605 66.9
OsKitaake04g154900 Oryza sativa Kitaake HOM05M002591 ORTHO05M002977 1.2e-245 852.8 622 65.1
Seita.7G123800 Setaria italica HOM05M002591 ORTHO05M002977 1.5e-245 852.4 605 66.8
GWHGAORA023986 Cenchrus purpureus HOM05M002591 ORTHO05M002977 2.6e-245 851.7 630 64.6
Zm00001eb080820 Zea mays B73 HOM05M002591 ORTHO05M002977 3.4e-245 851.3 634 63.6
Bradi5g12360 Brachypodium distachyon HOM05M002591 ORTHO05M002977 6.5e-244 847.0 605 66.1
V3.Lp_chr2_0G21842 Lolium perenne HOM05M002591 ORTHO05M002977 8.4e-244 846.7 620 64.5
Aco002875 Ananas comosus HOM05M002591 ORTHO05M002977 3.2e-243 844.7 492 79.7
Os04g0459800 Oryza sativa ssp. japonica HOM05M002591 ORTHO05M002977 7.4e-232 807.0 539 69.6
GWHGAORA061898 Cenchrus purpureus HOM05M002591 ORTHO05M002977 1.4e-222 776.2 630 61.1
Mapoly0052s0044 Marchantia polymorpha HOM05M002591 ORTHO05M002977 4.2e-219 764.6 599 59.4
Pp3c11_24680 Physcomitrium patens HOM05M002591 ORTHO05M002977 2.1e-218 762.3 644 57.5
AagrBONN_evm.TU.Sc2ySwM_117.4074 Anthoceros agrestis HOM05M002591 ORTHO05M002977 3.0e-217 758.4 624 57.5
SMO356G0765 Selaginella moellendorffii HOM05M002591 ORTHO05M002977 8.8e-217 756.9 583 59.7
OsR498G0408697000.01 Oryza sativa ssp. indica HOM05M002591 ORTHO05M002977 5.3e-214 747.7 475 72.6
Sspon.05G0009940-1P Saccharum spontaneum HOM05M002591 ORTHO05M002977 2.2e-207 725.7 632 57.1
Zjn_sc00058.1.g00910.1.cf.mkhc Zoysia japonica ssp. nagirizaki HOM05M002591 ORTHO05M002977 1.1e-198 696.8 451 72.1
Zm00001eb424140 Zea mays B73 HOM05M002591 ORTHO05M002977 8.9e-193 677.2 492 63.2
Zm00001eb424180 Zea mays B73 HOM05M002591 ORTHO05M002977 8.9e-193 677.2 492 63.2
Zm00007a00023962 Zea mays B104 HOM05M002591 ORTHO05M002977 8.9e-193 677.2 492 63.2
evm.TU.AsparagusV1_03.1688.V1.1 Asparagus officinalis HOM05M002591 ORTHO05M002977 4.1e-182 641.7 450 68.0
Sspon.05G0009940-1A Saccharum spontaneum HOM05M002591 ORTHO05M002977 2.3e-164 582.8 404 69.1
Zm00001eb424230 Zea mays B73 HOM05M002591 ORTHO05M002977 8.4e-159 564.3 391 66.0
CBR_g36977 Chara braunii HOM05M002591 ORTHO05M002977 4.4e-152 542.0 435 58.6
Zm00007a00014075 Zea mays B104 HOM05M002591 ORTHO05M002977 3.4e-136 489.2 364 63.2
PRCOL_00000719 Prasinoderma coloniale HOM05M002591 ORTHO05M002977 6.5e-127 458.4 553 43.9
Bradi1g08847 Brachypodium distachyon HOM05M002591 ORTHO05M002977 2.7e-117 426.4 490 43.3
Zm00007a00024553 Zea mays B104 HOM05M002591 ORTHO05M002977 3.6e-117 426.0 277 69.3
GWHGAORA019613 Cenchrus purpureus HOM05M002591 ORTHO05M002977 6.1e-117 425.2 507 42.6
Seita.9G095100 Setaria italica HOM05M002591 ORTHO05M002977 1.8e-116 423.7 494 42.9
Asa2G06495 Allium sativum HOM05M002591 ORTHO05M002977 5.1e-116 422.2 500 44.8
Pahal.9G090200 Panicum hallii HOM05M002591 ORTHO05M002977 8.8e-116 421.4 512 42.2
evm.TU.AsparagusV1_03.2935.V1.1 Asparagus officinalis HOM05M002591 ORTHO05M002977 1.5e-115 420.6 486 44.2
Sevir.9G093600 Setaria viridis HOM05M002591 ORTHO05M002977 1.5e-115 420.6 494 42.7
Sobic.001G092200 Sorghum bicolor HOM05M002591 ORTHO05M002977 1.5e-115 420.6 494 42.7
Misin01G083200 Miscanthus sinensis HOM05M002591 ORTHO05M002977 7.4e-115 418.3 515 41.2
ATR0665G409 Amborella trichopoda HOM05M002591 ORTHO05M002977 1.7e-114 417.2 465 44.5
Potri.010G084100 Populus trichocarpa HOM05M002591 ORTHO05M002977 2.2e-114 416.8 515 41.9
OsKitaake03g336201 Oryza sativa Kitaake HOM05M002591 ORTHO05M002977 3.7e-114 416.0 513 42.1
OsR498G0307041000.01 Oryza sativa ssp. indica HOM05M002591 ORTHO05M002977 3.7e-114 416.0 513 42.1
Os03g0746500 Oryza sativa ssp. japonica HOM05M002591 ORTHO05M002977 3.7e-114 416.0 513 42.1
GWHGASIY028222 Secale cereale HOM05M002591 ORTHO05M002977 3.7e-114 416.0 490 42.9
Zm00001eb057040 Zea mays B73 HOM05M002591 ORTHO05M002977 3.7e-114 416.0 507 41.8
TraesCS5B03G0973300 Triticum aestivum HOM05M002591 ORTHO05M002977 4.8e-114 415.6 490 42.9
PH02Gene30896 Phyllostachys edulis HOM05M002591 ORTHO05M002977 1.1e-113 414.5 494 41.9
TraesCS5D03G0881300 Triticum aestivum HOM05M002591 ORTHO05M002977 1.8e-113 413.7 490 42.7
AT4G14790 Arabidopsis thaliana HOM05M002591 ORTHO05M002977 3.1e-113 412.9 478 44.4
Misin02G071200 Miscanthus sinensis HOM05M002591 ORTHO05M002977 5.3e-113 412.1 509 40.9
Horvu_MOREX_5H01G560300 Hordeum vulgare HOM05M002591 ORTHO05M002977 6.9e-113 411.8 490 42.2
TraesCS5A03G0921900 Triticum aestivum HOM05M002591 ORTHO05M002977 1.2e-112 411.0 518 41.3
TRITD5Av1G202650 Triticum turgidum HOM05M002591 ORTHO05M002977 1.2e-112 411.0 518 41.3
TRITD5Bv1G198110 Triticum turgidum HOM05M002591 ORTHO05M002977 1.5e-112 410.6 490 42.4
Glyma.01G235700 Glycine max HOM05M002591 ORTHO05M002977 2.0e-112 410.2 498 42.4
Zm00007a00005376 Zea mays B104 HOM05M002591 ORTHO05M002977 2.6e-112 409.8 507 41.8
OB03G40960 Oryza brachyantha HOM05M002591 ORTHO05M002977 3.4e-112 409.5 494 41.5
Ot_Chr4_g07544 Oropetium thomaeum HOM05M002591 ORTHO05M002977 4.5e-112 409.1 509 40.9
CALSI_Maker00009861 Calamus simplicifolius HOM05M002591 ORTHO05M002977 1.0e-111 407.9 508 41.3
HPP92_024843 Vanilla planifolia HOM05M002591 ORTHO05M002977 2.7e-109 399.8 468 42.3
HPP92_026615 Vanilla planifolia HOM05M002591 ORTHO05M002977 3.6e-109 399.4 468 42.3
MBI11_g32998_MAGBIO Magnolia biondii HOM05M002591 ORTHO05M002977 2.3e-108 396.7 495 41.2
p5.00_sc00217_p0030 Elaeis guineensis HOM05M002591 ORTHO05M002977 5.1e-108 395.6 410 46.1
Aco009695 Ananas comosus HOM05M002591 ORTHO05M002977 7.4e-107 391.7 487 41.1
Glyma.11G007500 Glycine max HOM05M002591 ORTHO05M002977 1.3e-106 391.0 498 41.8
SMO196G0191 Selaginella moellendorffii HOM05M002591 ORTHO05M002977 3.7e-106 389.4 456 45.8
GWHGAZTO026653 Oryza alta HOM05M002591 ORTHO05M002977 1.4e-105 387.5 396 47.2
Spipo3G0091100 Spirodela polyrhiza HOM05M002591 ORTHO05M002977 7.7e-104 381.7 470 41.9
Dexi7B01G0009660 Digitaria exilis HOM05M002591 ORTHO05M002977 1.3e-103 380.9 300 61.0
MCO16G401 Micromonas commoda HOM05M002591 ORTHO05M002977 1.3e-103 380.9 470 42.6
EJB05_04528 Eragrostis curvula HOM05M002591 ORTHO05M002977 4.2e-102 375.9 386 46.9
CDE04G2869 Ceratophyllum demersum HOM05M002591 ORTHO05M002977 1.8e-100 370.5 386 44.8
Ma07_g27290 Musa acuminata HOM05M002591 ORTHO05M002977 1.0e-95 354.8 456 39.5
GWHGAORA050937 Cenchrus purpureus HOM05M002591 ORTHO05M002977 2.9e-95 353.2 508 38.0
Zjn_sc00014.1.g03920.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M002591 ORTHO05M002977 2.4e-89 333.6 403 41.7
Zm00007a00023959 Zea mays B104 HOM05M002591 ORTHO05M002977 1.0e-87 328.2 352 48.3
AagrBONN_evm.TU.Sc2ySwM_228.3584 Anthoceros agrestis HOM05M002591 ORTHO05M002977 1.7e-87 327.4 364 46.4
Aco023211 Ananas comosus HOM05M003172 ORTHO05M003204 1.2e-85 321.2 409 41.3
TRIDC5BG060290 Triticum dicoccoides HOM05M002591 ORTHO05M002977 8.8e-84 315.1 400 41.2
Zm00007a00023967 Zea mays B104 HOM05M002591 ORTHO05M002977 1.3e-82 311.2 205 68.3
DDU444G0084 Dioscorea dumetorum HOM05M002591 ORTHO05M002977 2.3e-79 300.4 373 42.1
GWHGAORA050955 Cenchrus purpureus HOM05M002591 ORTHO05M002977 3.6e-77 293.1 494 35.4
Zosma03g32970 Zostera marina HOM05M002591 ORTHO05M002977 1.2e-75 288.1 392 39.5
Zm00001eb424090 Zea mays B73 HOM05M002591 ORTHO05M002977 1.6e-72 277.7 180 69.4
Sevir.6G070900 Setaria viridis HOM05M002591 ORTHO05M002977 1.9e-70 270.8 242 50.8
Cre06.g270900 Chlamydomonas reinhardtii HOM05M002591 ORTHO05M002977 6.8e-60 235.7 605 28.8
AET5Gv20897000 Aegilops tauschii HOM05M002591 ORTHO05M002977 1.6e-56 224.6 307 38.8
evm.TU.AsparagusV1_03.1687.V1.1 Asparagus officinalis HOM05M002591 ORTHO05M002977 2.8e-45 187.2 119 74.8
GWHGAZTO076546 Oryza alta HOM05M002591 ORTHO05M002977 4.2e-41 173.3 216 43.1
Sspon.01G0061530-1D Saccharum spontaneum HOM05M002591 ORTHO05M002977 1.6e-40 171.4 151 50.3
Zm00007a00023965 Zea mays B104 HOM05M002591 ORTHO05M027150 2.8e-37 160.6 102 66.7
Zm00001eb424200 Zea mays B73 HOM05M002591 ORTHO05M027150 8.1e-37 159.1 142 52.8
Zm00007a00024549 Zea mays B104 HOM05M002591 ORTHO05M027150 1.2e-35 155.2 102 65.7
Zm00007a00023960 Zea mays B104 HOM05M002591 ORTHO05M002977 1.6e-24 118.2 107 51.4
Zm00007a00035722 Zea mays B104 HOM05M002591 ORTHO05M002977 5.3e-20 103.2 147 34.7
CBR_g36979 Chara braunii HOM05M000890 ORTHO05M000696 7.1e-17 92.8 128 35.9
SMO196G0031 Selaginella moellendorffii HOM05M015296 ORTHO05M234773 3.0e-15 87.4 406 24.4
Zm00001eb424100 Zea mays B73 HOM05M002591 ORTHO05M002977 1.1e-14 85.5 88 45.5
Zm00001eb424080 Zea mays B73 HOM05M002591 ORTHO05M270242 5.0e-10 70.1 58 48.3
Asa7G06616 Allium sativum HOM05M002591 ORTHO05M002977 1.4e-09 68.6 154 27.9
Zm00007a00001687 Zea mays B104 HOM05M000561 ORTHO05M000631 2.5e-06 57.8 45 51.1


User provided reference genes

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