Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g011370.2 Solanum lycopersicum HOM05M005754 ORTHO05M007810 0.0e+00 1910.6 1039 100.0
Potri.004G085500 Populus trichocarpa HOM05M005754 ORTHO05M007810 0.0e+00 1194.1 1016 63.8
Glyma.11G215600 Glycine max HOM05M005754 ORTHO05M007810 0.0e+00 1158.7 1005 61.4
Glyma.18G041000 Glycine max HOM05M005754 ORTHO05M007810 0.0e+00 1156.4 1005 62.1
Ma09_g15330 Musa acuminata HOM05M005754 ORTHO05M007810 0.0e+00 1091.6 1006 59.0
Aco002979 Ananas comosus HOM05M005754 ORTHO05M007810 2.1e-311 1071.6 1030 56.4
DDU550G0341 Dioscorea dumetorum HOM05M005754 ORTHO05M007810 6.3e-311 1070.1 1027 56.4
AT5G37630 Arabidopsis thaliana HOM05M005754 ORTHO05M007810 1.8e-305 1052.0 1012 56.0
Asa4G00503 Allium sativum HOM05M005754 ORTHO05M007810 1.4e-294 1015.8 1002 54.9
GWHGASIY020683 Secale cereale HOM05M005754 ORTHO05M007810 2.1e-293 1011.9 1018 55.6
Bradi1g44160 Brachypodium distachyon HOM05M005754 ORTHO05M007810 8.7e-292 1006.5 1007 54.8
TraesCS7B03G0292000 Triticum aestivum HOM05M005754 ORTHO05M007810 8.7e-292 1006.5 1016 55.6
ATR0753G168 Amborella trichopoda HOM05M005754 ORTHO05M007810 1.1e-291 1006.1 1002 53.3
TraesCS7A03G0478100 Triticum aestivum HOM05M005754 ORTHO05M007810 1.1e-291 1006.1 1018 55.2
TRIDC7AG025740 Triticum dicoccoides HOM05M005754 ORTHO05M007810 1.1e-291 1006.1 1018 55.2
TRITD7Av1G070150 Triticum turgidum HOM05M005754 ORTHO05M007810 1.1e-291 1006.1 1018 55.2
Ot_Chr2_gn32460 Oropetium thomaeum HOM05M005754 ORTHO05M007810 2.8e-290 1001.5 1019 54.0
p5.00_sc00004_p0367 Elaeis guineensis HOM05M005754 ORTHO05M007810 4.8e-290 1000.7 902 58.8
PH02Gene05274 Phyllostachys edulis HOM05M005754 ORTHO05M007810 6.2e-290 1000.3 1006 54.5
TraesCS7D03G0463000 Triticum aestivum HOM05M005754 ORTHO05M007810 9.0e-289 996.5 1017 55.2
TRITD7Bv1G046020 Triticum turgidum HOM05M005754 ORTHO05M007810 1.2e-288 996.1 1016 55.2
Zm00001eb379890 Zea mays B73 HOM05M005754 ORTHO05M007810 1.2e-288 996.1 1009 54.2
Zm00007a00012240 Zea mays B104 HOM05M005754 ORTHO05M007810 1.2e-288 996.1 1009 54.2
Seita.4G113500 Setaria italica HOM05M005754 ORTHO05M007810 1.7e-287 992.3 989 55.1
V3.Lp_chr7_0.1G2688 Lolium perenne HOM05M005754 ORTHO05M007810 2.2e-287 991.9 1006 54.3
Misin18G111600 Miscanthus sinensis HOM05M005754 ORTHO05M007810 2.2e-287 991.9 1023 54.7
MBI19_g22067_MAGBIO Magnolia biondii HOM05M005754 ORTHO05M007810 2.9e-287 991.5 1129 51.2
AET7Gv20517200 Aegilops tauschii HOM05M005754 ORTHO05M007810 4.9e-287 990.7 998 55.7
Horvu_MOREX_7H01G238900 Hordeum vulgare HOM05M005754 ORTHO05M007810 4.9e-287 990.7 1017 55.0
OsKitaake06g104300 Oryza sativa Kitaake HOM05M005754 ORTHO05M007810 1.1e-286 989.6 1010 54.0
Pahal.4G277800 Panicum hallii HOM05M005754 ORTHO05M007810 1.1e-286 989.6 1006 54.9
GWHGAORA016623 Cenchrus purpureus HOM05M005754 ORTHO05M007810 5.6e-283 977.2 1014 53.9
Sobic.010G105400 Sorghum bicolor HOM05M005754 ORTHO05M007810 2.1e-282 975.3 1016 54.5
Dexi4B01G0010790 Digitaria exilis HOM05M005754 ORTHO05M007810 8.1e-282 973.4 1022 53.8
Dexi4A01G0010480 Digitaria exilis HOM05M005754 ORTHO05M007810 2.9e-279 964.9 1010 53.5
GWHGAORA056613 Cenchrus purpureus HOM05M005754 ORTHO05M007810 2.7e-277 958.4 1011 53.4
EJB05_45389 Eragrostis curvula HOM05M005754 ORTHO05M007810 6.7e-276 953.7 1011 52.8
CDE05G1264 Ceratophyllum demersum HOM05M005754 ORTHO05M007810 1.5e-275 952.6 837 58.3
CALSI_Maker00021083 Calamus simplicifolius HOM05M005754 ORTHO05M007810 7.4e-275 950.3 905 57.1
Spipo15G0035600 Spirodela polyrhiza HOM05M005754 ORTHO05M007810 6.2e-274 947.2 921 55.7
Sevir.4G113200 Setaria viridis HOM05M005754 ORTHO05M007810 9.3e-270 933.3 892 56.6
OsR498G0612025100.01 Oryza sativa ssp. indica HOM05M005754 ORTHO05M007810 5.8e-264 914.1 890 55.6
Zosma04g20210 Zostera marina HOM05M005754 ORTHO05M007810 1.9e-262 909.1 949 52.2
EJB05_45388 Eragrostis curvula HOM05M005754 ORTHO05M007810 2.5e-262 908.7 1011 51.7
OB06G19010 Oryza brachyantha HOM05M005754 ORTHO05M007810 2.5e-262 908.7 890 55.8
Sspon.08G0021610-2D Saccharum spontaneum HOM05M005754 ORTHO05M007810 5.5e-262 907.5 1072 51.2
GWHGAZTO037876 Oryza alta HOM05M005754 ORTHO05M007810 2.7e-245 852.0 766 57.3
Sspon.08G0021610-1B Saccharum spontaneum HOM05M005754 ORTHO05M007810 1.1e-241 840.1 1057 48.7
Sspon.08G0021610-1T Saccharum spontaneum HOM05M005754 ORTHO05M007810 1.1e-241 840.1 1057 48.7
GWHGAZTO086689 Oryza alta HOM05M005754 ORTHO05M007810 2.4e-217 759.2 743 54.5
TRIDC7BG016220 Triticum dicoccoides HOM05M005754 ORTHO05M007810 7.7e-216 754.2 678 57.4
Pp3c22_14670 Physcomitrium patens HOM05M005754 ORTHO05M007810 1.2e-197 693.7 1004 41.6
evm.TU.AsparagusV1_06.536.V1.1 Asparagus officinalis HOM05M005754 ORTHO05M007810 1.9e-193 679.9 652 57.4
HPP92_006138 Vanilla planifolia HOM05M005754 ORTHO05M007810 1.2e-192 677.2 603 58.2
SEGI_16018 Sequoiadendron giganteum HOM05M005754 ORTHO05M007810 1.9e-174 616.7 677 50.7
Mapoly0032s0119 Marchantia polymorpha HOM05M005754 ORTHO05M007810 1.4e-172 610.5 902 41.2
SMO367G0263 Selaginella moellendorffii HOM05M005754 ORTHO05M007810 2.4e-169 599.7 919 39.1
AagrBONN_evm.TU.Sc2ySwM_228.4009 Anthoceros agrestis HOM05M005754 ORTHO05M007810 7.1e-161 571.6 959 39.1
evm.TU.AsparagusV1_06.499.V1.1 Asparagus officinalis HOM05M005754 ORTHO05M007810 6.1e-104 382.5 318 61.0
SEGI_18021 Sequoiadendron giganteum HOM05M005754 ORTHO05M007810 2.0e-91 340.9 318 53.8
Os06g0256000 Oryza sativa ssp. japonica HOM05M005754 ORTHO05M007810 2.4e-76 290.8 387 47.3
CBR_g39392 Chara braunii HOM05M000008 ORTHO05M000015 2.3e-71 274.2 418 38.3
MCO13G329 Micromonas commoda HOM05M005754 ORTHO05M007810 2.9e-69 267.3 944 26.8
CDE05G3412 Ceratophyllum demersum HOM05M005754 ORTHO05M007810 2.3e-66 257.7 213 58.7
MBI19_g43231_MAGBIO Magnolia biondii HOM05M005754 ORTHO05M007810 3.1e-63 247.3 234 57.7
PRCOL_00005851 Prasinoderma coloniale HOM05M005754 ORTHO05M007810 7.6e-62 242.7 896 28.2
Zjn_sc00093.1.g00560.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M005754 ORTHO05M007810 1.0e-34 152.5 259 39.8
HPP92_006139 Vanilla planifolia HOM05M005754 ORTHO05M007810 5.1e-34 150.2 250 47.2
p5.00_sc00192_p0007 Elaeis guineensis HOM05M005754 ORTHO05M007810 1.2e-30 139.0 117 55.6
GWHGAZTO086690 Oryza alta HOM05M005754 ORTHO05M007810 1.2e-27 129.0 225 44.4
PH02Gene07303 Phyllostachys edulis HOM05M005754 ORTHO05M007810 5.5e-20 103.6 183 44.3
Asa8G04307 Allium sativum HOM05M005754 ORTHO05M007810 7.7e-14 83.2 109 41.3
PH02Gene07304 Phyllostachys edulis HOM05M000382 ORTHO05M002700 2.1e-11 75.1 64 59.4
SEGI_04861 Sequoiadendron giganteum HOM05M005754 ORTHO05M002700 4.4e-09 67.4 57 50.9
SEGI_36380 Sequoiadendron giganteum HOM05M005754 ORTHO05M240620 4.5e-06 57.4 47 53.2
SEGI_22187 Sequoiadendron giganteum HOM05M005754 ORTHO05M000240 7.7e-06 56.6 44 54.5


User provided reference genes

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