Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g010950.2 Solanum lycopersicum HOM05M004804 ORTHO05M005855 1.4e-204 715.3 361 100.0
Potri.010G189500 Populus trichocarpa HOM05M004804 ORTHO05M005855 3.0e-151 538.1 364 71.2
Glyma.13G008300 Glycine max HOM05M004804 ORTHO05M005855 1.2e-144 516.2 365 71.5
p5.00_sc00008_p0312 Elaeis guineensis HOM05M004804 ORTHO05M005855 5.2e-135 484.2 365 65.8
AT3G11220 Arabidopsis thaliana HOM05M004804 ORTHO05M005855 7.5e-126 453.8 352 64.8
Bradi1g30370 Brachypodium distachyon HOM05M004804 ORTHO05M005855 2.2e-125 452.2 367 62.7
Ot_Chr2_gn33347 Oropetium thomaeum HOM05M004804 ORTHO05M005855 6.4e-125 450.7 366 62.8
evm.TU.AsparagusV1_01.3296.V1.1 Asparagus officinalis HOM05M004804 ORTHO05M005855 9.2e-124 446.8 366 61.2
DDU799G0010 Dioscorea dumetorum HOM05M004804 ORTHO05M005855 1.2e-123 446.4 366 63.4
DDU613G0751 Dioscorea dumetorum HOM05M004804 ORTHO05M005855 1.6e-123 446.0 370 63.0
Ma09_g06620 Musa acuminata HOM05M004804 ORTHO05M005855 7.8e-123 443.7 365 62.5
PH02Gene45764 Phyllostachys edulis HOM05M004804 ORTHO05M005855 1.0e-122 443.4 366 60.9
V3.Lp_chr7_0.1G12146 Lolium perenne HOM05M004804 ORTHO05M005855 1.3e-122 443.0 347 63.7
TRIDC7AG073250 Triticum dicoccoides HOM05M004804 ORTHO05M005855 3.0e-122 441.8 361 60.9
OsKitaake06g227900 Oryza sativa Kitaake HOM05M004804 ORTHO05M005855 5.0e-122 441.0 369 62.1
Os06g0639600 Oryza sativa ssp. japonica HOM05M004804 ORTHO05M005855 5.0e-122 441.0 369 62.1
Seita.9G073800 Setaria italica HOM05M004804 ORTHO05M005855 5.0e-122 441.0 366 61.2
Sevir.9G072500 Setaria viridis HOM05M004804 ORTHO05M005855 5.0e-122 441.0 366 61.2
GWHGASIY036227 Secale cereale HOM05M004804 ORTHO05M005855 8.6e-122 440.3 371 60.4
GWHGASIY036473 Secale cereale HOM05M004804 ORTHO05M005855 8.6e-122 440.3 371 60.4
TraesCS7D03G1209300 Triticum aestivum HOM05M004804 ORTHO05M005855 1.9e-121 439.1 367 60.5
TraesCS7A03G1270500 Triticum aestivum HOM05M004804 ORTHO05M005855 7.3e-121 437.2 369 60.7
TraesCS7B03G1189700 Triticum aestivum HOM05M004804 ORTHO05M005855 1.2e-120 436.4 349 61.6
TRITD7Bv1G220690 Triticum turgidum HOM05M004804 ORTHO05M005855 1.2e-120 436.4 349 61.6
Pahal.9G069900 Panicum hallii HOM05M004804 ORTHO05M005855 1.6e-120 436.0 366 60.7
TRITD7Av1G268450 Triticum turgidum HOM05M004804 ORTHO05M005855 1.6e-120 436.0 371 60.4
Horvu_MOREX_7H01G700200 Hordeum vulgare HOM05M004804 ORTHO05M005855 8.0e-120 433.7 350 62.9
Pahal.4G072000 Panicum hallii HOM05M004804 ORTHO05M005855 8.0e-120 433.7 366 60.4
Sobic.010G203300 Sorghum bicolor HOM05M004804 ORTHO05M005855 4.0e-119 431.4 364 59.9
TRIDC7BG069490 Triticum dicoccoides HOM05M004804 ORTHO05M005855 4.0e-119 431.4 349 61.6
GWHGAORA029356 Cenchrus purpureus HOM05M004804 ORTHO05M005855 6.8e-119 430.6 370 60.0
AET7Gv21275300 Aegilops tauschii HOM05M004804 ORTHO05M005855 8.9e-119 430.3 349 61.6
Aco017981 Ananas comosus HOM05M004804 ORTHO05M005855 2.6e-118 428.7 344 62.8
Misin18G203600 Miscanthus sinensis HOM05M004804 ORTHO05M005855 2.6e-118 428.7 364 59.6
GWHGAORA057121 Cenchrus purpureus HOM05M004804 ORTHO05M005855 4.4e-118 427.9 366 60.7
Asa4G02889 Allium sativum HOM05M004804 ORTHO05M005855 4.9e-117 424.5 368 60.1
GWHGAORA050762 Cenchrus purpureus HOM05M004804 ORTHO05M005855 6.4e-117 424.1 382 58.1
Sspon.08G0005230-4D Saccharum spontaneum HOM05M004804 ORTHO05M005855 1.1e-116 423.3 374 58.3
Sevir.4G212900 Setaria viridis HOM05M004804 ORTHO05M005855 1.1e-116 423.3 363 60.3
Sspon.08G0005230-1A Saccharum spontaneum HOM05M004804 ORTHO05M005855 2.1e-115 419.1 385 56.9
Seita.4G204200 Setaria italica HOM05M004804 ORTHO05M005855 4.6e-115 417.9 363 59.8
Glyma.03G108600 Glycine max HOM05M004804 ORTHO05M005855 7.8e-115 417.2 302 68.2
Zm00001eb387250 Zea mays B73 HOM05M004804 ORTHO05M005855 5.1e-114 414.5 366 58.2
GWHGAORA019786 Cenchrus purpureus HOM05M004804 ORTHO05M005855 1.1e-113 413.3 364 59.1
CDE04G2384 Ceratophyllum demersum HOM05M004804 ORTHO05M005855 4.7e-112 407.9 361 59.3
Spipo7G0026200 Spirodela polyrhiza HOM05M004804 ORTHO05M005855 1.1e-111 406.8 362 58.3
MBI10_g34777_MAGBIO Magnolia biondii HOM05M004804 ORTHO05M005855 6.8e-111 404.1 340 61.5
Dexi9A01G0007050 Digitaria exilis HOM05M004804 ORTHO05M005855 1.2e-107 393.3 434 50.7
EJB05_41661 Eragrostis curvula HOM05M004804 ORTHO05M005855 3.5e-107 391.7 382 55.5
GWHGAORA050777 Cenchrus purpureus HOM05M004804 ORTHO05M005855 1.7e-106 389.4 378 55.3
SEGI_17743 Sequoiadendron giganteum HOM05M004804 ORTHO05M005855 5.6e-105 384.4 381 50.9
Sspon.08G0005230-3C Saccharum spontaneum HOM05M004804 ORTHO05M005855 5.2e-103 377.9 364 55.2
Zm00007a00045976 Zea mays B104 HOM05M004804 ORTHO05M005855 7.1e-100 367.5 366 53.8
ATR1153G009 Amborella trichopoda HOM05M004804 ORTHO05M005855 8.7e-98 360.5 308 58.1
GWHGAORA019799 Cenchrus purpureus HOM05M004804 ORTHO05M005855 5.3e-95 351.3 375 52.3
Sspon.08G0005230-2B Saccharum spontaneum HOM05M004804 ORTHO05M005855 4.4e-94 348.2 364 52.5
Sspon.08G0028600-1D Saccharum spontaneum HOM05M004804 ORTHO05M005855 9.9e-94 347.1 352 53.1
GWHGAORA029447 Cenchrus purpureus HOM05M004804 ORTHO05M005855 5.4e-92 341.3 295 59.3
GWHGAZTO039720 Oryza alta HOM05M004804 ORTHO05M005855 2.3e-90 335.9 400 51.2
Pp3c9_23940 Physcomitrium patens HOM05M004804 ORTHO05M005855 3.6e-88 328.6 370 47.0
Mapoly0006s0234 Marchantia polymorpha HOM05M004804 ORTHO05M005855 8.4e-85 317.4 385 45.2
CALSI_Maker00041068 Calamus simplicifolius HOM05M004804 ORTHO05M005855 1.9e-84 316.2 256 61.3
CALSI_Maker00045956 Calamus simplicifolius HOM05M004804 ORTHO05M005855 4.8e-80 301.6 312 53.8
AagrBONN_evm.TU.Sc2ySwM_117.1770 Anthoceros agrestis HOM05M004804 ORTHO05M005855 1.4e-79 300.1 414 43.5
PH02Gene11205 Phyllostachys edulis HOM05M004804 ORTHO05M005855 8.4e-77 290.8 282 53.5
Dexi9B01G0006740 Digitaria exilis HOM05M004804 ORTHO05M005855 9.3e-68 260.8 379 42.7
OsR498G0613037000.01 Oryza sativa ssp. indica HOM05M004804 ORTHO05M005855 9.0e-63 244.2 229 54.6
OB06G30020 Oryza brachyantha HOM05M004804 ORTHO05M005855 2.6e-62 242.7 226 54.4
Misin19G208100 Miscanthus sinensis HOM05M004804 ORTHO05M005855 7.7e-62 241.1 270 47.4
GWHGAZTO088539 Oryza alta HOM05M004804 ORTHO05M005855 1.0e-61 240.7 230 54.3
Zosma03g16140 Zostera marina HOM05M003694 ORTHO05M005345 7.7e-54 214.5 204 54.4
V3.Lp_chr5_0G2732 Lolium perenne HOM05M000003 ORTHO05M000132 1.2e-51 207.2 353 39.1
GWHGAZTO088538 Oryza alta HOM05M004804 ORTHO05M005855 2.2e-48 196.4 137 72.3
SMO146G0066 Selaginella moellendorffii HOM05M004804 ORTHO05M005855 1.8e-42 176.8 253 42.3
Asa2G05951 Allium sativum HOM05M004804 ORTHO05M005855 2.0e-41 173.3 138 58.7
ATR0022G031 Amborella trichopoda HOM05M004804 ORTHO05M005855 3.8e-37 159.1 141 61.7
SEGI_40300 Sequoiadendron giganteum HOM05M004804 ORTHO05M005855 4.4e-33 145.6 199 39.2
HPP92_008022 Vanilla planifolia HOM05M004804 ORTHO05M005855 6.1e-27 125.2 114 55.3
Asa2G05952 Allium sativum HOM05M004804 ORTHO05M005855 2.0e-25 120.2 165 44.8
MBI03_g45376_MAGBIO Magnolia biondii HOM05M004804 ORTHO05M005855 2.0e-25 120.2 84 69.0
HPP92_008021 Vanilla planifolia HOM05M004804 ORTHO05M005855 7.0e-23 111.7 72 80.6
Zjn_sc00069.1.g00760.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M004804 ORTHO05M005855 9.2e-23 111.3 99 54.5
Cre03.g196000 Chlamydomonas reinhardtii HOM05M004804 ORTHO05M005855 7.3e-20 101.7 390 22.6
MBI03_g46739_MAGBIO Magnolia biondii HOM05M004804 ORTHO05M005855 8.0e-19 98.2 77 59.7
Asa5G04716 Allium sativum HOM05M004804 ORTHO05M005855 6.8e-18 95.1 80 56.2
CBR_g30786 Chara braunii HOM05M000008 ORTHO05M000001 5.4e-15 85.5 133 34.6


User provided reference genes

Program Settings