Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g008570.2 Solanum lycopersicum HOM05M002651 ORTHO05M002932 0.0e+00 1397.9 692 100.0
Potri.008G077000 Populus trichocarpa HOM05M002651 ORTHO05M002932 1.2e-233 812.8 698 57.2
Potri.010G180800 Populus trichocarpa HOM05M002651 ORTHO05M002932 2.7e-233 811.6 703 57.0
Glyma.18G244700 Glycine max HOM05M002651 ORTHO05M002932 1.8e-224 782.3 700 57.3
Glyma.09G248100 Glycine max HOM05M002651 ORTHO05M002932 1.5e-220 769.2 716 55.9
CALSI_Maker00043580 Calamus simplicifolius HOM05M002651 ORTHO05M002932 8.0e-209 730.3 711 52.7
AT3G03305 Arabidopsis thaliana HOM05M002651 ORTHO05M002932 5.9e-204 714.1 726 51.7
p5.00_sc00481_p0015 Elaeis guineensis HOM05M002651 ORTHO05M002932 5.0e-203 711.1 708 51.3
DDU469G0444 Dioscorea dumetorum HOM05M002651 ORTHO05M002932 5.2e-200 701.0 735 49.7
Aco011401 Ananas comosus HOM05M002651 ORTHO05M002932 5.7e-199 697.6 692 51.2
PH02Gene27126 Phyllostachys edulis HOM05M002651 ORTHO05M002932 2.8e-198 695.3 709 49.2
Bradi2g57490 Brachypodium distachyon HOM05M002651 ORTHO05M002932 2.0e-196 689.1 709 49.8
Ot_Chr3_g13052 Oropetium thomaeum HOM05M002651 ORTHO05M002932 1.7e-195 686.0 728 48.6
Seita.5G411300 Setaria italica HOM05M002651 ORTHO05M002932 5.0e-195 684.5 709 49.4
Sevir.5G416500 Setaria viridis HOM05M002651 ORTHO05M002932 6.6e-195 684.1 709 49.4
Pahal.5G060000 Panicum hallii HOM05M002651 ORTHO05M002932 8.6e-195 683.7 710 48.5
GWHGAORA045753 Cenchrus purpureus HOM05M002651 ORTHO05M002932 2.5e-194 682.2 685 50.4
EJB05_18143 Eragrostis curvula HOM05M002651 ORTHO05M002932 7.2e-194 680.6 725 47.2
GWHGAZTO006394 Oryza alta HOM05M002651 ORTHO05M002932 7.2e-194 680.6 713 49.2
OB01G48900 Oryza brachyantha HOM05M002651 ORTHO05M002932 2.8e-193 678.7 711 48.5
Sspon.03G0001420-1A Saccharum spontaneum HOM05M002651 ORTHO05M002932 3.6e-193 678.3 713 47.8
Sspon.03G0001420-2B Saccharum spontaneum HOM05M002651 ORTHO05M002932 1.0e-192 676.8 709 48.0
Misin06G355300 Miscanthus sinensis HOM05M002651 ORTHO05M002932 1.8e-192 676.0 709 48.7
V3.Lp_chr3_0G21576 Lolium perenne HOM05M002651 ORTHO05M002932 3.0e-192 675.2 710 49.4
Sobic.003G385300 Sorghum bicolor HOM05M002651 ORTHO05M002932 2.0e-191 672.5 709 48.0
Horvu_MOREX_3H01G559400 Hordeum vulgare HOM05M002651 ORTHO05M002932 7.5e-191 670.6 711 49.2
MBI08_g20603_MAGBIO Magnolia biondii HOM05M002651 ORTHO05M002932 7.5e-191 670.6 747 49.8
GWHGAORA030647 Cenchrus purpureus HOM05M002651 ORTHO05M002932 9.8e-191 670.2 710 48.9
Asa1G02109 Allium sativum HOM05M002651 ORTHO05M002932 3.7e-190 668.3 733 47.9
OsR498G0102501300.01 Oryza sativa ssp. indica HOM05M002651 ORTHO05M002932 6.3e-190 667.5 716 48.0
HPP92_013562 Vanilla planifolia HOM05M002651 ORTHO05M002932 1.4e-189 666.4 727 48.3
TraesCS3B03G1068200 Triticum aestivum HOM05M002651 ORTHO05M002932 5.4e-189 664.5 709 48.8
TRIDC3BG063960 Triticum dicoccoides HOM05M002651 ORTHO05M002932 5.4e-189 664.5 709 48.8
OsKitaake01g431700 Oryza sativa Kitaake HOM05M002651 ORTHO05M002932 9.2e-189 663.7 716 47.8
Os01g0894000 Oryza sativa ssp. japonica HOM05M002651 ORTHO05M002932 9.2e-189 663.7 716 47.8
TRITD3Bv1G221810 Triticum turgidum HOM05M002651 ORTHO05M002932 3.5e-188 661.8 709 48.7
Zm00001eb144980 Zea mays B73 HOM05M002651 ORTHO05M002932 4.5e-188 661.4 709 47.5
GWHGASIY017008 Secale cereale HOM05M002651 ORTHO05M002932 1.0e-187 660.2 711 48.7
Zm00007a00018818 Zea mays B104 HOM05M002651 ORTHO05M002932 1.0e-187 660.2 709 47.4
TraesCS3A03G0938500 Triticum aestivum HOM05M002651 ORTHO05M002932 4.3e-186 654.8 711 48.4
AET3Gv20892000 Aegilops tauschii HOM05M002651 ORTHO05M002932 5.6e-186 654.4 710 48.5
TraesCS3D03G0870700 Triticum aestivum HOM05M002651 ORTHO05M002932 5.6e-186 654.4 710 48.5
TRIDC3AG057090 Triticum dicoccoides HOM05M002651 ORTHO05M002932 1.6e-185 652.9 701 48.8
Ma07_g25290 Musa acuminata HOM05M002651 ORTHO05M002932 1.7e-182 642.9 699 48.6
TRITD3Av1G233320 Triticum turgidum HOM05M002651 ORTHO05M002932 1.4e-176 623.2 779 44.2
ATR0824G241 Amborella trichopoda HOM05M002651 ORTHO05M002932 3.9e-171 605.1 696 46.4
GWHGAORA045781 Cenchrus purpureus HOM05M002651 ORTHO05M002932 3.6e-169 598.6 704 45.6
Sspon.02G0020900-1A Saccharum spontaneum HOM05M002651 ORTHO05M002932 4.0e-168 595.1 711 45.6
Sspon.02G0020900-2D Saccharum spontaneum HOM05M002651 ORTHO05M002932 7.6e-167 590.9 711 45.6
EJB05_13033 Eragrostis curvula HOM05M002651 ORTHO05M002932 1.6e-164 583.2 712 43.4
EJB05_13108 Eragrostis curvula HOM05M002651 ORTHO05M002932 1.6e-164 583.2 712 43.3
GWHGAZTO042988 Oryza alta HOM05M002651 ORTHO05M002932 8.6e-163 577.4 712 43.4
Misin03G090200 Miscanthus sinensis HOM05M002651 ORTHO05M002932 1.2e-161 573.5 711 44.0
OB07G17160 Oryza brachyantha HOM05M002651 ORTHO05M002932 3.1e-160 568.9 710 43.9
GWHGAORA030626 Cenchrus purpureus HOM05M002651 ORTHO05M002932 5.2e-160 568.2 708 44.2
Misin04G102800 Miscanthus sinensis HOM05M002651 ORTHO05M002932 2.0e-159 566.2 711 43.7
OsKitaake07g099600 Oryza sativa Kitaake HOM05M002651 ORTHO05M002932 3.8e-158 562.0 712 42.6
Os07g0274100 Oryza sativa ssp. japonica HOM05M002651 ORTHO05M002932 3.8e-158 562.0 712 42.6
OsR498G0713985100.01 Oryza sativa ssp. indica HOM05M002651 ORTHO05M002932 1.9e-157 559.7 712 42.6
PH02Gene30648 Phyllostachys edulis HOM05M002651 ORTHO05M002932 5.4e-157 558.1 734 42.9
Spipo9G0052600 Spirodela polyrhiza HOM05M002651 ORTHO05M002932 5.4e-157 558.1 651 47.5
Zosma05g08850 Zostera marina HOM05M002651 ORTHO05M002932 1.3e-147 526.9 655 44.4
Sspon.03G0001420-4D Saccharum spontaneum HOM05M002651 ORTHO05M002932 1.1e-146 523.9 474 53.2
CDE09G0389 Ceratophyllum demersum HOM05M002651 ORTHO05M002932 3.6e-145 518.8 472 54.7
Pahal.2G096600 Panicum hallii HOM05M002651 ORTHO05M002932 1.1e-144 517.3 574 46.9
Sspon.03G0001420-1P Saccharum spontaneum HOM05M002651 ORTHO05M002932 5.3e-144 515.0 473 52.4
GWHGAZTO058732 Oryza alta HOM05M002651 ORTHO05M002932 1.1e-130 470.7 448 52.7
Sspon.03G0001420-3C Saccharum spontaneum HOM05M002651 ORTHO05M002932 1.4e-128 463.8 432 52.5
MisinT045700 Miscanthus sinensis HOM05M002651 ORTHO05M002932 3.9e-123 445.7 491 46.0
SMO228G0200 Selaginella moellendorffii HOM05M002651 ORTHO05M002932 5.5e-117 425.2 668 38.5
MBI12_g21502_MAGBIO Magnolia biondii HOM05M002651 ORTHO05M002932 5.0e-110 402.1 718 34.0
AagrBONN_evm.TU.Sc2ySwM_344.5471 Anthoceros agrestis HOM05M002651 ORTHO05M002932 9.7e-106 387.9 672 37.2
PH02Gene27035 Phyllostachys edulis HOM05M002651 ORTHO05M002932 2.4e-104 383.3 701 34.1
Zosma01g15090 Zostera marina HOM05M002651 ORTHO05M002932 2.6e-103 379.8 699 33.0
p5.00_sc00001_p0826 Elaeis guineensis HOM05M002651 ORTHO05M002932 5.9e-103 378.6 716 33.4
GWHGAORA027003 Cenchrus purpureus HOM05M002651 ORTHO05M002932 9.4e-101 371.3 705 34.3
Mapoly0048s0028 Marchantia polymorpha HOM05M002651 ORTHO05M002932 1.2e-100 370.9 774 33.9
Sobic.002G104600 Sorghum bicolor HOM05M002651 ORTHO05M002932 1.6e-100 370.5 518 39.8
Horvu_MOREX_4H01G343000 Hordeum vulgare HOM05M002651 ORTHO05M002932 2.7e-100 369.8 701 33.5
Aco019851 Ananas comosus HOM05M002651 ORTHO05M002932 6.1e-100 368.6 694 34.0
Ma09_g00480 Musa acuminata HOM05M002651 ORTHO05M002932 8.0e-100 368.2 716 33.4
Ot_Chr4_g00759 Oropetium thomaeum HOM05M002651 ORTHO05M002932 8.0e-100 368.2 698 34.0
GWHGASIY038439 Secale cereale HOM05M002651 ORTHO05M002932 1.8e-99 367.1 700 33.1
Sspon.01G0006800-3C Saccharum spontaneum HOM05M002651 ORTHO05M002932 4.0e-99 365.9 692 33.5
AET4Gv20552800 Aegilops tauschii HOM05M002651 ORTHO05M002932 6.7e-99 365.2 701 33.7
Pahal.9G524700 Panicum hallii HOM05M002651 ORTHO05M002932 8.8e-99 364.8 701 33.8
V3.Lp_chr4_0G22878 Lolium perenne HOM05M002651 ORTHO05M002932 1.1e-98 364.4 701 32.2
EJB05_07265 Eragrostis curvula HOM05M002651 ORTHO05M002932 2.0e-98 363.6 691 33.7
Sspon.01G0006800-2B Saccharum spontaneum HOM05M002651 ORTHO05M002932 2.6e-98 363.2 692 33.4
TraesCS4D03G0530200 Triticum aestivum HOM05M002651 ORTHO05M002932 4.4e-98 362.5 701 33.5
Sspon.01G0006800-1A Saccharum spontaneum HOM05M002651 ORTHO05M002932 7.5e-98 361.7 692 33.2
Asa2G00217 Allium sativum HOM05M002651 ORTHO05M002932 9.7e-98 361.3 723 33.9
TraesCS4B03G0598500 Triticum aestivum HOM05M002651 ORTHO05M002932 1.3e-97 360.9 701 33.5
TRITD4Bv1G132240 Triticum turgidum HOM05M002651 ORTHO05M002932 1.3e-97 360.9 701 33.5
TraesCS4A03G0177300 Triticum aestivum HOM05M002651 ORTHO05M002932 2.2e-97 360.1 702 33.3
TRIDC4AG011830 Triticum dicoccoides HOM05M002651 ORTHO05M002932 2.2e-97 360.1 702 33.3
TRITD4Av1G038280 Triticum turgidum HOM05M002651 ORTHO05M002932 2.2e-97 360.1 702 33.3
GWHGAORA055365 Cenchrus purpureus HOM05M002651 ORTHO05M002932 2.8e-97 359.8 716 34.1
evm.TU.AsparagusV1_03.1408.V1.1 Asparagus officinalis HOM05M002651 ORTHO05M002932 4.8e-97 359.0 732 33.2
HPP92_028167 Vanilla planifolia HOM05M002651 ORTHO05M002932 4.8e-97 359.0 700 32.3
OsKitaake03g118100 Oryza sativa Kitaake HOM05M002651 ORTHO05M002932 2.4e-96 356.7 701 32.5
OsR498G0305614000.01 Oryza sativa ssp. indica HOM05M002651 ORTHO05M002932 3.1e-96 356.3 701 32.5
GWHGAZTO090650 Oryza alta HOM05M002651 ORTHO05M002932 5.3e-96 355.5 498 39.8
Pp3c23_21040 Physcomitrium patens HOM05M002651 ORTHO05M002932 1.9e-93 347.1 744 31.7
Pp3c8_13610 Physcomitrium patens HOM05M002651 ORTHO05M002932 9.4e-93 344.7 758 32.3
Spipo20G0017400 Spirodela polyrhiza HOM05M002651 ORTHO05M002932 5.7e-90 335.5 715 30.9
ATR0564G177 Amborella trichopoda HOM05M002651 ORTHO05M002932 1.7e-89 334.0 693 32.9
DDU272G0435 Dioscorea dumetorum HOM05M002651 ORTHO05M002932 6.3e-89 332.0 708 31.6
Bradi1g67510 Brachypodium distachyon HOM05M002651 ORTHO05M002932 5.4e-80 302.4 641 32.8
CALSI_Maker00041448 Calamus simplicifolius HOM05M002651 ORTHO05M002932 9.5e-69 265.0 380 38.9
Zjn_sc00034.1.g04600.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M002651 ORTHO05M002932 1.3e-62 244.6 215 55.8
GWHGAZTO023195 Oryza alta HOM05M002651 ORTHO05M002932 3.4e-58 229.9 562 30.4
Seita.9G462300 Setaria italica HOM05M002651 ORTHO05M002932 4.9e-57 226.1 557 30.5
Sobic.001G430400 Sorghum bicolor HOM05M002651 ORTHO05M002932 8.3e-57 225.3 549 30.1
GWHGAZTO001625 Oryza alta HOM05M002651 ORTHO05M002932 9.2e-56 221.9 560 30.4
Sevir.9G465600 Setaria viridis HOM05M002651 ORTHO05M002932 9.2e-56 221.9 557 30.7
TRIDC4BG038620 Triticum dicoccoides HOM05M002651 ORTHO05M002932 1.0e-54 218.4 566 30.4
Zm00001eb398210 Zea mays B73 HOM05M002651 ORTHO05M002932 1.4e-51 208.0 557 29.8
Dexi5A01G0035150 Digitaria exilis HOM05M002651 ORTHO05M002932 7.8e-47 192.2 134 64.2
GWHGAZTO058733 Oryza alta HOM05M002651 ORTHO05M002932 1.9e-45 187.6 252 42.1
Misin02G398800 Miscanthus sinensis HOM05M002651 ORTHO05M002932 2.5e-45 187.2 404 30.2
Misin01G409900 Miscanthus sinensis HOM05M002651 ORTHO05M002932 3.3e-45 186.8 380 31.3
CDE06G0114 Ceratophyllum demersum HOM05M002651 ORTHO05M002932 1.4e-40 171.4 356 32.3
GWHGAZTO001626 Oryza alta HOM05M002651 ORTHO05M002932 6.4e-33 146.0 138 44.9
Dexi5B01G0035170 Digitaria exilis HOM05M002651 ORTHO05M002932 7.1e-32 142.5 140 50.7
Os03g0260100 Oryza sativa ssp. japonica HOM05M002651 ORTHO05M002932 1.2e-31 141.7 128 47.7
Pp3c20_18430 Physcomitrium patens HOM05M002651 ORTHO05M002932 2.3e-30 137.5 458 26.9
GWHGAZTO023196 Oryza alta HOM05M002651 ORTHO05M002932 3.0e-30 137.1 128 45.3
Zm00007a00006312 Zea mays B104 HOM05M002651 ORTHO05M002932 2.4e-27 127.5 670 21.6
CDE02G4030 Ceratophyllum demersum HOM05M002651 ORTHO05M002932 4.2e-24 116.7 103 49.5
Asa5G04054 Allium sativum HOM05M000196 ORTHO05M000137 9.3e-24 115.5 146 39.0
Spipo9G0052700 Spirodela polyrhiza HOM05M002651 ORTHO05M002932 2.3e-14 84.3 78 55.1
Dexi2A01G0009600 Digitaria exilis HOM05M002651 ORTHO05M002932 6.9e-11 72.8 58 56.9
Dexi2B01G0008850 Digitaria exilis HOM05M002651 ORTHO05M002932 1.5e-10 71.6 58 55.2
Cre11.g478456 Chlamydomonas reinhardtii HOM05M002651 ORTHO05M002932 2.2e-09 67.8 396 22.2
Zjn_sc00002.1.g07370.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M002651 ORTHO05M002932 7.9e-07 59.3 47 53.2
CDE07G1406 Ceratophyllum demersum HOM05M002651 ORTHO05M002932 5.1e-06 56.6 49 57.1
Dexi9A01G0040690 Digitaria exilis HOM05M002651 ORTHO05M002932 6.7e-06 56.2 57 47.4
Dexi9B01G0039810 Digitaria exilis HOM05M002651 ORTHO05M002932 8.7e-06 55.8 57 47.4


User provided reference genes

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