Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g006120.1 Solanum lycopersicum HOM05M000020 ORTHO05M251435 1.1e-33 145.2 72 100.0
Solyc11g006100.1 Solanum lycopersicum HOM05M000020 ORTHO05M002692 2.0e-22 107.8 68 77.9
Solyc05g055840.4 Solanum lycopersicum HOM05M000020 ORTHO05M002692 5.0e-13 76.6 72 58.3
HPP92_026241 Vanilla planifolia HOM05M000020 ORTHO05M002692 1.6e-11 71.6 65 49.2
Ma05_g22040 Musa acuminata HOM05M000020 ORTHO05M002692 3.6e-11 70.5 65 49.2
Potri.004G214100 Populus trichocarpa HOM05M000020 ORTHO05M002692 8.0e-11 69.3 69 50.7
Potri.009G008100 Populus trichocarpa HOM05M000020 ORTHO05M002692 1.4e-10 68.6 69 49.3
CALSI_Maker00040184 Calamus simplicifolius HOM05M000020 ORTHO05M002692 3.0e-10 67.4 65 49.2
Solyc09g008050.3 Solanum lycopersicum HOM05M000020 ORTHO05M002692 3.0e-10 67.4 70 45.7
AT2G36970 Arabidopsis thaliana HOM05M000020 ORTHO05M002692 3.9e-10 67.0 69 49.3
V3.Lp_chr7_0.1G800 Lolium perenne HOM05M000020 ORTHO05M002692 5.2e-10 66.6 65 44.6
OsKitaake10g113400 Oryza sativa Kitaake HOM05M000020 ORTHO05M002692 5.2e-10 66.6 71 42.3
OsR498G1018798800.01 Oryza sativa ssp. indica HOM05M000020 ORTHO05M002692 5.2e-10 66.6 71 42.3
Os10g0442400 Oryza sativa ssp. japonica HOM05M000020 ORTHO05M002692 5.2e-10 66.6 71 42.3
GWHGAZTO008740 Oryza alta HOM05M000020 ORTHO05M002692 6.7e-10 66.2 71 42.3
PH02Gene20861 Phyllostachys edulis HOM05M000020 ORTHO05M002692 6.7e-10 66.2 65 44.6
Zm00001eb047200 Zea mays B73 HOM05M000020 ORTHO05M002692 8.8e-10 65.9 65 41.5
Zm00007a00046698 Zea mays B104 HOM05M000020 ORTHO05M002692 8.8e-10 65.9 65 41.5
GWHGAORA018123 Cenchrus purpureus HOM05M000020 ORTHO05M002692 1.1e-09 65.5 65 43.1
Seita.9G239700 Setaria italica HOM05M000020 ORTHO05M002692 1.1e-09 65.5 65 43.1
Sevir.9G239600 Setaria viridis HOM05M000020 ORTHO05M002692 1.1e-09 65.5 65 43.1
Ma08_g13040 Musa acuminata HOM05M000020 ORTHO05M002692 1.5e-09 65.1 65 47.7
AET7Gv21020000 Aegilops tauschii HOM05M000020 ORTHO05M002692 2.0e-09 64.7 70 42.9
Aco008876 Ananas comosus HOM05M000020 ORTHO05M002692 2.0e-09 64.7 71 49.3
Bradi3g27610 Brachypodium distachyon HOM05M000020 ORTHO05M002692 2.0e-09 64.7 70 41.4
Horvu_MOREX_1H01G082400 Hordeum vulgare HOM05M000020 ORTHO05M002692 2.0e-09 64.7 65 41.5
V3.Lp_chr1_0G2418 Lolium perenne HOM05M000020 ORTHO05M002692 2.0e-09 64.7 70 41.4
TraesCS1B03G0202500 Triticum aestivum HOM05M000020 ORTHO05M002692 2.0e-09 64.7 70 41.4
TraesCS7B03G0862600 Triticum aestivum HOM05M000020 ORTHO05M002692 2.0e-09 64.7 70 42.9
TraesCS7D03G0976800 Triticum aestivum HOM05M000020 ORTHO05M002692 2.0e-09 64.7 70 42.9
TRIDC1BG010550 Triticum dicoccoides HOM05M000020 ORTHO05M002692 2.0e-09 64.7 70 41.4
TRIDC7BG051430 Triticum dicoccoides HOM05M000020 ORTHO05M002692 2.0e-09 64.7 70 42.9
TRITD1Bv1G022770 Triticum turgidum HOM05M000020 ORTHO05M002692 2.0e-09 64.7 70 41.4
TRITD7Bv1G176520 Triticum turgidum HOM05M000020 ORTHO05M002692 2.0e-09 64.7 70 42.9
TraesCS7A03G1021900 Triticum aestivum HOM05M000020 ORTHO05M002692 2.6e-09 64.3 65 44.6
TRIDC7AG058730 Triticum dicoccoides HOM05M000020 ORTHO05M002692 2.6e-09 64.3 65 44.6
CALSI_Maker00040183 Calamus simplicifolius HOM05M000020 ORTHO05M002692 3.3e-09 63.9 60 53.3
CALSI_Maker00040205 Calamus simplicifolius HOM05M000020 ORTHO05M002692 3.3e-09 63.9 60 53.3
Dexi9B01G0021640 Digitaria exilis HOM05M000020 ORTHO05M002692 3.3e-09 63.9 71 39.4
AET1Gv20152300 Aegilops tauschii HOM05M000020 ORTHO05M002692 4.4e-09 63.5 70 40.0
EJB05_31181 Eragrostis curvula HOM05M000020 ORTHO05M002692 4.4e-09 63.5 64 45.3
TraesCS1D03G0137400 Triticum aestivum HOM05M000020 ORTHO05M002692 4.4e-09 63.5 70 40.0
Dexi9A01G0022250 Digitaria exilis HOM05M000020 ORTHO05M002692 5.7e-09 63.2 71 39.4
p5.00_sc00379_p0005 Elaeis guineensis HOM05M000020 ORTHO05M002692 5.7e-09 63.2 46 56.5
EJB05_22197 Eragrostis curvula HOM05M000020 ORTHO05M002692 5.7e-09 63.2 65 43.1
Horvu_MOREX_7H01G583600 Hordeum vulgare HOM05M000020 ORTHO05M002692 5.7e-09 63.2 70 40.0
TraesCS1A03G0148800 Triticum aestivum HOM05M000020 ORTHO05M002692 5.7e-09 63.2 70 38.6
TRIDC1AG008410 Triticum dicoccoides HOM05M000020 ORTHO05M002692 5.7e-09 63.2 70 40.0
TRITD1Av1G019080 Triticum turgidum HOM05M000020 ORTHO05M002692 5.7e-09 63.2 70 38.6
evm.TU.AsparagusV1_04.1763.V1.1 Asparagus officinalis HOM05M000020 ORTHO05M000074 7.4e-09 62.8 65 49.2
GWHGASIY040619 Secale cereale HOM05M000020 ORTHO05M002692 7.4e-09 62.8 70 40.0
Sobic.001G236400 Sorghum bicolor HOM05M000020 ORTHO05M002692 7.4e-09 62.8 65 41.5
TRITD7Av1G227470 Triticum turgidum HOM05M000020 ORTHO05M002692 7.4e-09 62.8 65 44.6
Zm00007a00042892 Zea mays B104 HOM05M000020 ORTHO05M002692 7.4e-09 62.8 65 43.1
Sspon.01G0043590-3D Saccharum spontaneum HOM05M000020 ORTHO05M002692 9.7e-09 62.4 65 41.5
TRIDC1AG008400 Triticum dicoccoides HOM05M000020 ORTHO05M002692 9.7e-09 62.4 70 40.0
MisinT251400 Miscanthus sinensis HOM05M000020 ORTHO05M002692 1.3e-08 62.0 65 41.5
Sspon.01G0043590-1B Saccharum spontaneum HOM05M000020 ORTHO05M002692 1.3e-08 62.0 65 40.0
GWHGASIY023165 Secale cereale HOM05M000020 ORTHO05M002692 1.3e-08 62.0 64 40.6
EJB05_31221 Eragrostis curvula HOM05M000020 ORTHO05M002692 1.7e-08 61.6 59 47.5
TraesCS7A03G0033300 Triticum aestivum HOM05M000020 ORTHO05M002692 2.2e-08 61.2 64 40.6
AET7Gv20025000 Aegilops tauschii HOM05M000020 ORTHO05M002692 3.7e-08 60.5 46 47.8
V3.Lp_chr1_0G2428 Lolium perenne HOM05M000020 ORTHO05M002692 3.7e-08 60.5 70 38.6
Misin01G213200 Miscanthus sinensis HOM05M000020 ORTHO05M002692 3.7e-08 60.5 65 40.0
Sspon.01G0043590-2C Saccharum spontaneum HOM05M000020 ORTHO05M002692 3.7e-08 60.5 65 40.0
GWHGASIY000680 Secale cereale HOM05M000020 ORTHO05M002692 3.7e-08 60.5 70 38.6
Horvu_MOREX_7H01G011700 Hordeum vulgare HOM05M000020 ORTHO05M002692 6.3e-08 59.7 46 47.8
Ot_Chr1_gn30652 Oropetium thomaeum HOM05M000020 ORTHO05M002692 6.3e-08 59.7 65 43.1
Ot_Un2_g27936 Oropetium thomaeum HOM05M000020 ORTHO05M002692 6.3e-08 59.7 65 43.1
GWHGASIY028658 Secale cereale HOM05M000020 ORTHO05M002692 6.3e-08 59.7 46 47.8
TraesCS4A03G1214300 Triticum aestivum HOM05M000020 ORTHO05M002692 6.3e-08 59.7 46 47.8
TraesCS7D03G0027500 Triticum aestivum HOM05M000020 ORTHO05M002692 6.3e-08 59.7 46 47.8
TRIDC7AG001210 Triticum dicoccoides HOM05M000020 ORTHO05M002692 6.3e-08 59.7 46 47.8
TRITD4Av1G259530 Triticum turgidum HOM05M000020 ORTHO05M002692 6.3e-08 59.7 46 47.8
ATR1132G029 Amborella trichopoda HOM05M000020 ORTHO05M002692 8.2e-08 59.3 70 42.9
DDU368G0004 Dioscorea dumetorum HOM05M000020 ORTHO05M002692 8.2e-08 59.3 66 42.4
DDU407G0381 Dioscorea dumetorum HOM05M000020 ORTHO05M002692 8.2e-08 59.3 66 42.4
Ma05_g13250 Musa acuminata HOM05M000020 ORTHO05M002692 8.2e-08 59.3 70 38.6
Asa0G05257 Allium sativum HOM05M000020 ORTHO05M002692 1.1e-07 58.9 70 44.3
Asa1G01939 Allium sativum HOM05M000020 ORTHO05M002692 1.1e-07 58.9 70 44.3
AT2G28080 Arabidopsis thaliana HOM05M000020 ORTHO05M002692 1.1e-07 58.9 71 42.3
MBI18_g20775_MAGBIO Magnolia biondii HOM05M000020 ORTHO05M002692 1.1e-07 58.9 70 42.9
p5.00_sc00379_p0004 Elaeis guineensis HOM05M000020 ORTHO05M002692 1.4e-07 58.5 63 42.9
Asa7G06569 Allium sativum HOM05M000020 ORTHO05M002692 1.8e-07 58.2 68 44.1
Ma04_g20330 Musa acuminata HOM05M000020 ORTHO05M002692 1.8e-07 58.2 62 46.8
AET1Gv20152100 Aegilops tauschii HOM05M000020 ORTHO05M002692 2.4e-07 57.8 70 37.1
Asa7G06567 Allium sativum HOM05M000020 ORTHO05M000074 2.4e-07 57.8 70 42.9
TRIDC4AG070380 Triticum dicoccoides HOM05M000020 ORTHO05M002692 2.4e-07 57.8 46 45.7
TraesCS1D03G0137300 Triticum aestivum HOM05M000020 ORTHO05M002692 3.1e-07 57.4 70 37.1
Ma04_g20340 Musa acuminata HOM05M000020 ORTHO05M002692 2.0e-06 54.7 62 45.2
Solyc09g008090.3 Solanum lycopersicum HOM05M000020 ORTHO05M002692 2.0e-06 54.7 48 50.0


User provided reference genes

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