Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g005230.1 Solanum lycopersicum HOM05M003379 ORTHO05M005645 4.1e-256 886.7 421 100.0
Solyc11g005240.1 Solanum lycopersicum HOM05M003379 ORTHO05M005645 2.8e-172 608.2 409 73.6
Solyc06g005930.3 Solanum lycopersicum HOM05M003379 ORTHO05M005645 5.7e-85 318.2 400 45.0
Solyc11g005180.1 Solanum lycopersicum HOM05M003379 ORTHO05M005645 7.5e-77 291.2 370 45.7
MBI18_g45417_MAGBIO Magnolia biondii HOM05M003379 ORTHO05M010007 3.3e-56 222.6 402 32.6
CALSI_Maker00010281 Calamus simplicifolius HOM05M003379 ORTHO05M010007 4.9e-44 182.2 418 29.7
CALSI_Maker00024786 Calamus simplicifolius HOM05M003379 ORTHO05M010007 4.9e-44 182.2 418 29.7
Sobic.006G195900 Sorghum bicolor HOM05M003379 ORTHO05M010007 4.9e-44 182.2 414 30.9
CALSI_Maker00010252 Calamus simplicifolius HOM05M003379 ORTHO05M010007 2.4e-43 179.9 419 29.6
CALSI_Maker00010254 Calamus simplicifolius HOM05M003379 ORTHO05M010007 2.4e-43 179.9 419 29.6
GWHGAZTO031155 Oryza alta HOM05M003379 ORTHO05M010007 5.4e-43 178.7 415 30.6
GWHGAORA062858 Cenchrus purpureus HOM05M003379 ORTHO05M010007 1.2e-42 177.6 408 31.6
Ot_Chr6_g01518 Oropetium thomaeum HOM05M003379 ORTHO05M010007 7.4e-40 168.3 400 30.5
EJB05_50549 Eragrostis curvula HOM05M003379 ORTHO05M010007 2.8e-39 166.4 408 30.6
EJB05_50550 Eragrostis curvula HOM05M003379 ORTHO05M010007 8.1e-39 164.9 419 28.4
GWHGAZTO080827 Oryza alta HOM05M003379 ORTHO05M010007 1.8e-38 163.7 421 28.7
Sobic.006G141300 Sorghum bicolor HOM05M003379 ORTHO05M010007 6.9e-38 161.8 411 30.7
EJB05_39525 Eragrostis curvula HOM05M003379 ORTHO05M010007 1.5e-37 160.6 381 29.4
Misin12G215800 Miscanthus sinensis HOM05M003379 ORTHO05M010007 2.9e-36 156.4 410 29.8
DDU440G0222 Dioscorea dumetorum HOM05M000427 ORTHO05M000327 1.9e-35 153.7 436 27.8
HPP92_020694 Vanilla planifolia HOM05M003379 ORTHO05M010007 2.1e-34 150.2 420 27.4
DDU771G0014 Dioscorea dumetorum HOM05M001215 ORTHO05M010007 3.5e-34 149.4 465 27.1
Misin11G136500 Miscanthus sinensis HOM05M003379 ORTHO05M010007 2.3e-33 146.7 378 30.2
Sspon.05G0004430-2D Saccharum spontaneum HOM05M003379 ORTHO05M010007 1.2e-29 134.4 394 27.2
Sevir.7G228500 Setaria viridis HOM05M003379 ORTHO05M010007 1.5e-29 134.0 373 29.5
Potri.001G026700 Populus trichocarpa HOM05M006609 ORTHO05M005645 3.8e-28 129.4 212 35.4
AT5G59560 Arabidopsis thaliana HOM05M006609 ORTHO05M005645 1.9e-27 127.1 221 35.3
Potri.003G198000 Populus trichocarpa HOM05M006609 ORTHO05M005645 1.9e-27 127.1 208 36.5
Dexi7B01G0017670 Digitaria exilis HOM05M003379 ORTHO05M010007 4.2e-27 125.9 363 26.7
Potri.T125306 Populus trichocarpa HOM05M006609 ORTHO05M005645 7.1e-27 125.2 208 35.6
CALSI_Maker00016533 Calamus simplicifolius HOM05M003379 ORTHO05M010007 2.1e-26 123.6 425 26.6
Glyma.11G154000 Glycine max HOM05M006609 ORTHO05M005645 1.0e-25 121.3 208 34.1
OsKitaake04g241800 Oryza sativa Kitaake HOM05M003379 ORTHO05M010007 1.0e-25 121.3 444 26.6
CDE12G0865 Ceratophyllum demersum HOM05M006609 ORTHO05M005645 1.3e-25 120.9 216 32.4
Glyma.06G083300 Glycine max HOM05M006609 ORTHO05M005645 5.1e-25 119.0 208 33.7
Seita.7G216800 Setaria italica HOM05M003379 ORTHO05M010007 5.1e-25 119.0 358 29.3
Solyc11g005260.2 Solanum lycopersicum HOM05M006609 ORTHO05M005645 9.7e-24 114.8 251 29.5
ATR0763G113 Amborella trichopoda HOM05M006609 ORTHO05M005645 4.8e-23 112.5 230 30.0
HPP92_020796 Vanilla planifolia HOM05M003379 ORTHO05M010007 8.2e-23 111.7 233 29.6
CDE01G0515 Ceratophyllum demersum HOM05M006609 ORTHO05M005645 1.1e-22 111.3 220 29.5
Sspon.05G0004430-1A Saccharum spontaneum HOM05M003379 ORTHO05M010007 1.8e-22 110.5 283 31.4
Asa5G02392 Allium sativum HOM05M006609 ORTHO05M005645 1.5e-21 107.5 225 32.9
GWHGAORA021663 Cenchrus purpureus HOM05M003379 ORTHO05M010007 2.6e-21 106.7 416 25.7
Ma10_g01230 Musa acuminata HOM05M006609 ORTHO05M005645 2.6e-21 106.7 236 30.9
Spipo5G0072200 Spirodela polyrhiza HOM05M006609 ORTHO05M005645 7.6e-21 105.1 222 29.7
CALSI_Maker00019920 Calamus simplicifolius HOM05M003379 ORTHO05M005645 3.8e-20 102.8 155 36.1
CALSI_Maker00028977 Calamus simplicifolius HOM05M006609 ORTHO05M005645 1.1e-19 101.3 197 32.5
Aco011004 Ananas comosus HOM05M006609 ORTHO05M005645 1.4e-19 100.9 235 30.6
p5.00_sc00227_p0011 Elaeis guineensis HOM05M006609 ORTHO05M005645 3.2e-19 99.8 156 34.6
CALSI_Maker00001899 Calamus simplicifolius HOM05M003379 ORTHO05M005645 5.5e-19 99.0 155 35.5
Asa3G01921 Allium sativum HOM05M003379 ORTHO05M010007 2.1e-18 97.1 232 31.9
DDU059G0203 Dioscorea dumetorum HOM05M006609 ORTHO05M005645 2.7e-18 96.7 226 30.1
p5.00_sc00069_p0173 Elaeis guineensis HOM05M006609 ORTHO05M005645 4.6e-18 95.9 156 33.3
Pahal.3G099600 Panicum hallii HOM05M006609 ORTHO05M005645 4.6e-18 95.9 177 33.3
SEGI_35747 Sequoiadendron giganteum HOM05M006609 ORTHO05M005645 1.0e-17 94.7 180 30.0
Sevir.3G044700 Setaria viridis HOM05M006609 ORTHO05M005645 1.0e-17 94.7 172 33.1
Sobic.003G402200 Sorghum bicolor HOM05M006609 ORTHO05M005645 1.3e-17 94.4 240 30.0
PH02Gene27788 Phyllostachys edulis HOM05M006609 ORTHO05M005645 2.3e-17 93.6 188 35.6
HPP92_000641 Vanilla planifolia HOM05M006609 ORTHO05M005645 5.1e-17 92.4 212 29.2
Misin06G382200 Miscanthus sinensis HOM05M006609 ORTHO05M005645 6.7e-17 92.0 228 30.7
Misin05G371400 Miscanthus sinensis HOM05M006609 ORTHO05M005645 8.8e-17 91.7 228 30.7
Misin11G180000 Miscanthus sinensis HOM05M003379 ORTHO05M010007 1.9e-16 90.5 124 43.5
GWHGAORA004491 Cenchrus purpureus HOM05M006609 ORTHO05M005645 3.3e-16 89.7 172 33.7
EJB05_39518 Eragrostis curvula HOM05M003379 ORTHO05M010007 3.3e-16 89.7 115 40.9
OsKitaake04g241700 Oryza sativa Kitaake HOM05M003379 ORTHO05M010007 7.4e-16 88.6 112 43.8
OsR498G0409183000.01 Oryza sativa ssp. indica HOM05M003379 ORTHO05M010007 7.4e-16 88.6 112 43.8
HPP92_000706 Vanilla planifolia HOM05M006609 ORTHO05M005645 7.4e-16 88.6 160 31.9
Bradi2g37730 Brachypodium distachyon HOM05M006609 ORTHO05M005645 1.3e-15 87.8 227 30.8
CALSI_Maker00001907 Calamus simplicifolius HOM05M003379 ORTHO05M005645 1.3e-15 87.8 165 30.3
GWHGAZTO032474 Oryza alta HOM05M006609 ORTHO05M005645 1.3e-15 87.8 180 35.0
Horvu_MOREX_1H01G068700 Hordeum vulgare HOM05M006609 ORTHO05M005645 1.7e-15 87.4 217 30.4
OsKitaake05g014100 Oryza sativa Kitaake HOM05M006609 ORTHO05M005645 1.7e-15 87.4 180 34.4
OsR498G0509612100.01 Oryza sativa ssp. indica HOM05M006609 ORTHO05M005645 1.7e-15 87.4 180 34.4
Os05g0118000 Oryza sativa ssp. japonica HOM05M006609 ORTHO05M005645 1.7e-15 87.4 180 34.4
Dexi3A01G0009510 Digitaria exilis HOM05M006609 ORTHO05M005645 2.2e-15 87.0 160 33.1
Asa5G01174 Allium sativum HOM05M003379 ORTHO05M010007 2.8e-15 86.7 150 34.7
TraesCS1A03G0133900 Triticum aestivum HOM05M006609 ORTHO05M005645 2.8e-15 86.7 226 30.5
TRITD1Av1G016000 Triticum turgidum HOM05M006609 ORTHO05M005645 2.8e-15 86.7 226 30.5
p5.00_sc00184_p0001 Elaeis guineensis HOM05M003379 ORTHO05M005645 3.7e-15 86.3 146 33.6
Pp3c12_13390 Physcomitrium patens HOM05M006609 ORTHO05M005645 4.8e-15 85.9 174 33.9
Zm00001eb188200 Zea mays B73 HOM05M006609 ORTHO05M005645 6.3e-15 85.5 201 30.8
Zm00007a00024259 Zea mays B104 HOM05M006609 ORTHO05M005645 6.3e-15 85.5 201 30.8
GWHGAZTO081524 Oryza alta HOM05M006609 ORTHO05M005645 8.2e-15 85.1 171 33.3
CALSI_Maker00001893 Calamus simplicifolius HOM05M003379 ORTHO05M005645 1.1e-14 84.7 172 33.1
Ot_Chr5_g15369 Oropetium thomaeum HOM05M006609 ORTHO05M005645 1.4e-14 84.3 177 31.6
CALSI_Maker00001894 Calamus simplicifolius HOM05M003379 ORTHO05M005645 2.4e-14 83.6 107 43.9
Pp3c25_14670 Physcomitrium patens HOM05M006609 ORTHO05M005645 4.1e-14 82.8 169 32.5
Zjn_sc00016.1.g05600.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M006609 ORTHO05M005645 4.1e-14 82.8 176 29.5
CDE01G0328 Ceratophyllum demersum HOM05M006609 ORTHO05M005645 5.3e-14 82.4 240 25.8
Dexi7A01G0017050 Digitaria exilis HOM05M003379 ORTHO05M010007 5.3e-14 82.4 166 32.5
TraesCS1B03G0181700 Triticum aestivum HOM05M006609 ORTHO05M005645 5.3e-14 82.4 224 29.9
TRITD1Bv1G019150 Triticum turgidum HOM05M006609 ORTHO05M005645 5.3e-14 82.4 224 29.9
AET1Gv20133900 Aegilops tauschii HOM05M006609 ORTHO05M005645 1.2e-13 81.3 175 32.6
TraesCS1D03G0121800 Triticum aestivum HOM05M006609 ORTHO05M005645 1.2e-13 81.3 175 32.6
Asa6G01666 Allium sativum HOM05M003379 ORTHO05M010007 7.7e-13 78.6 160 31.2
GWHGAZTO080828 Oryza alta HOM05M003379 ORTHO05M010007 6.5e-12 75.5 168 31.0
Mapoly0008s0158 Marchantia polymorpha HOM05M006609 ORTHO05M005645 8.5e-12 75.1 170 30.0
Solyc03g071623.1 Solanum lycopersicum HOM05M003379 ORTHO05M005645 1.1e-11 74.7 78 50.0
SMO164G0021 Selaginella moellendorffii HOM05M006609 ORTHO05M005645 4.2e-11 72.8 165 31.5
AagrBONN_evm.TU.Sc2ySwM_362.1627 Anthoceros agrestis HOM05M006609 ORTHO05M005645 7.2e-11 72.0 165 27.9
CDE01G0684 Ceratophyllum demersum HOM05M003667 ORTHO05M004711 7.2e-11 72.0 133 30.8
TRIDC1BG009400 Triticum dicoccoides HOM05M006609 ORTHO05M005645 2.7e-10 70.1 157 31.2
MBI17_g12074_MAGBIO Magnolia biondii HOM05M000115 ORTHO05M000052 1.1e-08 64.7 173 27.7
PRCOL_00000242 Prasinoderma coloniale HOM05M006609 ORTHO05M005645 1.1e-08 64.7 161 31.1
MBI17_g21963_MAGBIO Magnolia biondii HOM05M000115 ORTHO05M000052 3.3e-08 63.2 134 29.9
MBI18_g13610_MAGBIO Magnolia biondii HOM05M000115 ORTHO05M000052 3.3e-08 63.2 135 29.6
MBI17_g29795_MAGBIO Magnolia biondii HOM05M000115 ORTHO05M000052 5.7e-08 62.4 131 26.7
OsKitaake04g241600 Oryza sativa Kitaake HOM05M003379 ORTHO05M010007 5.7e-08 62.4 134 28.4
Sspon.02G0006980-1A Saccharum spontaneum HOM05M003379 ORTHO05M010007 7.4e-08 62.0 136 29.4
Sspon.02G0006980-2B Saccharum spontaneum HOM05M003379 ORTHO05M010007 9.7e-08 61.6 136 29.4
Cre10.g423700 Chlamydomonas reinhardtii HOM05M006609 ORTHO05M005645 1.3e-07 61.2 61 42.6
MBI06_g08197_MAGBIO Magnolia biondii HOM05M000115 ORTHO05M000052 1.3e-07 61.2 125 29.6
GWHGAZTO080829 Oryza alta HOM05M003379 ORTHO05M010007 2.2e-07 60.5 78 39.7
CALSI_Maker00001895 Calamus simplicifolius HOM05M000592 ORTHO05M004172 2.8e-07 60.1 70 41.4
MBI03_g05800_MAGBIO Magnolia biondii HOM05M000115 ORTHO05M000052 2.8e-07 60.1 128 29.7
MBI18_g16547_MAGBIO Magnolia biondii HOM05M000115 ORTHO05M000052 3.7e-07 59.7 128 27.3
CDE12G0883 Ceratophyllum demersum HOM05M000401 ORTHO05M002078 6.3e-07 58.9 109 30.3
MBI05_g16261_MAGBIO Magnolia biondii HOM05M000115 ORTHO05M000052 1.1e-06 58.2 128 27.3
HPP92_014864 Vanilla planifolia HOM05M003379 ORTHO05M010007 5.3e-06 55.8 127 30.7


User provided reference genes

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