Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g097930.4 Solanum lycopersicum HOM05M001943 ORTHO05M002039 8.3e-86 319.7 177 100.0
CDE02G2693 Ceratophyllum demersum HOM05M001943 ORTHO05M002039 1.4e-53 212.6 114 87.7
p5.00_sc00632_p0002 Elaeis guineensis HOM05M001943 ORTHO05M002039 1.2e-52 209.5 121 81.8
evm.TU.AsparagusV1_09.1650.V1.1 Asparagus officinalis HOM05M001943 ORTHO05M002039 2.7e-52 208.4 121 81.0
Potri.002G235000 Populus trichocarpa HOM05M001943 ORTHO05M002039 2.7e-52 208.4 117 82.1
Asa5G01466 Allium sativum HOM05M001943 ORTHO05M002039 4.6e-52 207.6 123 78.0
Asa5G01467 Allium sativum HOM05M001943 ORTHO05M002039 4.6e-52 207.6 123 78.0
p5.00_sc00873_p0001 Elaeis guineensis HOM05M001943 ORTHO05M002039 1.7e-51 205.7 131 75.6
Ma06_g13540 Musa acuminata HOM05M001943 ORTHO05M002039 1.7e-51 205.7 127 78.7
Potri.014G148200 Populus trichocarpa HOM05M001943 ORTHO05M002039 2.3e-51 205.3 117 80.3
Aco016143 Ananas comosus HOM05M001943 ORTHO05M002039 3.0e-51 204.9 121 78.5
MBI07_g03821_MAGBIO Magnolia biondii HOM05M001943 ORTHO05M002039 3.0e-51 204.9 128 79.7
Ma11_g09390 Musa acuminata HOM05M001943 ORTHO05M002039 3.9e-51 204.5 125 80.0
Asa5G01471 Allium sativum HOM05M001943 ORTHO05M002039 1.1e-50 203.0 118 78.8
Aco021405 Ananas comosus HOM05M001943 ORTHO05M002039 1.9e-50 202.2 115 80.0
Asa5G01469 Allium sativum HOM05M001943 ORTHO05M002039 1.3e-49 199.5 133 72.9
PH02Gene27759 Phyllostachys edulis HOM05M001943 ORTHO05M002039 1.6e-49 199.1 130 71.5
Ma10_g17120 Musa acuminata HOM05M001943 ORTHO05M002039 6.2e-49 197.2 110 81.8
PH02Gene27762 Phyllostachys edulis HOM05M001943 ORTHO05M002039 6.2e-49 197.2 130 70.0
ATR0752G186 Amborella trichopoda HOM05M001943 ORTHO05M002039 1.1e-48 196.4 108 85.2
DDU460G0008 Dioscorea dumetorum HOM05M001943 ORTHO05M002039 1.8e-48 195.7 114 79.8
DDU739G0133 Dioscorea dumetorum HOM05M001943 ORTHO05M002039 1.8e-48 195.7 114 79.8
OsKitaake02g169800 Oryza sativa Kitaake HOM05M001943 ORTHO05M002039 1.8e-48 195.7 131 72.5
OsR498G0203807200.01 Oryza sativa ssp. indica HOM05M001943 ORTHO05M002039 1.8e-48 195.7 131 72.5
Ot_Chr1_g11193 Oropetium thomaeum HOM05M001943 ORTHO05M002039 2.4e-48 195.3 124 74.2
V3.Lp_chr6_0G10712 Lolium perenne HOM05M001943 ORTHO05M002039 4.0e-48 194.5 157 61.8
GWHGAZTO018470 Oryza alta HOM05M001943 ORTHO05M002039 4.0e-48 194.5 124 74.2
GWHGAZTO028997 Oryza alta HOM05M001943 ORTHO05M002039 4.0e-48 194.5 114 78.1
EJB05_21670 Eragrostis curvula HOM05M001943 ORTHO05M002039 6.9e-48 193.7 127 71.7
GWHGAZTO070035 Oryza alta HOM05M001943 ORTHO05M002039 6.9e-48 193.7 121 75.2
Sobic.004G146200 Sorghum bicolor HOM05M001943 ORTHO05M002039 6.9e-48 193.7 127 72.4
Seita.1G161100 Setaria italica HOM05M001943 ORTHO05M002039 9.0e-48 193.4 118 75.4
Sevir.1G162400 Setaria viridis HOM05M001943 ORTHO05M002039 9.0e-48 193.4 118 75.4
ATR0752G209 Amborella trichopoda HOM05M001943 ORTHO05M002039 1.2e-47 193.0 108 83.3
GWHGAORA023687 Cenchrus purpureus HOM05M001943 ORTHO05M002039 1.5e-47 192.6 114 77.2
OB04G16310 Oryza brachyantha HOM05M001943 ORTHO05M002039 1.5e-47 192.6 117 75.2
Bradi3g43500 Brachypodium distachyon HOM05M001943 ORTHO05M002039 2.0e-47 192.2 136 68.4
GWHGAZTO078651 Oryza alta HOM05M001943 ORTHO05M002039 2.6e-47 191.8 115 76.5
ATR0752G024 Amborella trichopoda HOM05M001943 ORTHO05M002039 4.5e-47 191.0 108 82.4
Mapoly0107s0039 Marchantia polymorpha HOM05M001943 ORTHO05M002039 4.5e-47 191.0 134 70.1
Sspon.04G0012240-3C Saccharum spontaneum HOM05M001943 ORTHO05M002039 4.5e-47 191.0 118 74.6
Pahal.1G193400 Panicum hallii HOM05M001943 ORTHO05M002039 5.8e-47 190.7 142 66.9
CDE09G0246 Ceratophyllum demersum HOM05M001943 ORTHO05M002039 7.6e-47 190.3 103 85.4
SEGI_38274 Sequoiadendron giganteum HOM05M001943 ORTHO05M002039 9.9e-47 189.9 116 75.0
Zm00001eb241110 Zea mays B73 HOM05M001943 ORTHO05M002039 9.9e-47 189.9 137 67.9
Zm00007a00034695 Zea mays B104 HOM05M001943 ORTHO05M002039 9.9e-47 189.9 137 67.9
PH02Gene45261 Phyllostachys edulis HOM05M001943 ORTHO05M002039 1.3e-46 189.5 117 75.2
Sspon.04G0012240-1A Saccharum spontaneum HOM05M001943 ORTHO05M002039 1.3e-46 189.5 134 67.9
Sspon.04G0012240-2B Saccharum spontaneum HOM05M001943 ORTHO05M002039 1.3e-46 189.5 134 67.9
Sspon.04G0012240-4D Saccharum spontaneum HOM05M001943 ORTHO05M002039 1.3e-46 189.5 118 74.6
Misin07G340800 Miscanthus sinensis HOM05M001943 ORTHO05M002039 2.9e-46 188.3 133 67.7
OsKitaake04g084200 Oryza sativa Kitaake HOM05M001943 ORTHO05M002039 3.8e-46 188.0 114 72.8
OsR498G0408216300.01 Oryza sativa ssp. indica HOM05M001943 ORTHO05M002039 3.8e-46 188.0 114 72.8
Os04g0346800 Oryza sativa ssp. japonica HOM05M001943 ORTHO05M002039 3.8e-46 188.0 114 72.8
Glyma.08G345000 Glycine max HOM05M001943 ORTHO05M002039 4.9e-46 187.6 107 80.4
ATR0686G066 Amborella trichopoda HOM05M001943 ORTHO05M002039 6.4e-46 187.2 108 82.4
Potri.002G250000 Populus trichocarpa HOM05M001943 ORTHO05M002039 8.4e-46 186.8 112 81.2
GWHGAORA023442 Cenchrus purpureus HOM05M001943 ORTHO05M002039 1.4e-45 186.0 117 74.4
Dexi1A01G0014090 Digitaria exilis HOM05M001943 ORTHO05M002039 1.4e-45 186.0 127 70.1
HPP92_020213 Vanilla planifolia HOM05M001943 ORTHO05M002039 2.4e-45 185.3 128 70.3
Solyc06g083130.4 Solanum lycopersicum HOM05M001943 ORTHO05M002039 3.2e-45 184.9 119 76.5
HPP92_020235 Vanilla planifolia HOM05M001943 ORTHO05M002039 3.2e-45 184.9 118 74.6
Dexi1B01G0013250 Digitaria exilis HOM05M001943 ORTHO05M002039 7.1e-45 183.7 118 73.7
Pahal.7G104600 Panicum hallii HOM05M001943 ORTHO05M002039 7.1e-45 183.7 116 74.1
Seita.7G053700 Setaria italica HOM05M001943 ORTHO05M002039 7.1e-45 183.7 126 71.4
Sevir.7G059600 Setaria viridis HOM05M001943 ORTHO05M002039 7.1e-45 183.7 126 71.4
TRIDC2BG042670 Triticum dicoccoides HOM05M001943 ORTHO05M002039 1.6e-44 182.6 119 71.4
TRITD2Bv1G135890 Triticum turgidum HOM05M001943 ORTHO05M002039 1.6e-44 182.6 119 71.4
AET2Gv20620700 Aegilops tauschii HOM05M001943 ORTHO05M002039 2.7e-44 181.8 112 75.0
GWHGASIY008491 Secale cereale HOM05M001943 ORTHO05M002039 2.7e-44 181.8 112 75.0
TraesCS2D03G0634200 Triticum aestivum HOM05M001943 ORTHO05M002039 2.7e-44 181.8 112 75.0
Horvu_MOREX_2H01G400300 Hordeum vulgare HOM05M001943 ORTHO05M002039 3.5e-44 181.4 112 75.0
TraesCS2B03G0761600 Triticum aestivum HOM05M001943 ORTHO05M002039 3.5e-44 181.4 124 70.2
Zjn_sc00020.1.g03390.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M001943 ORTHO05M002039 3.5e-44 181.4 145 64.1
Dexi7B01G0003940 Digitaria exilis HOM05M001943 ORTHO05M002039 4.6e-44 181.0 103 79.6
CBR_g46394 Chara braunii HOM05M003654 ORTHO05M004576 1.3e-43 179.5 127 65.4
AagrBONN_evm.TU.Sc2ySwM_344.3604 Anthoceros agrestis HOM05M001943 ORTHO05M002039 1.8e-43 179.1 112 76.8
AT3G25400 Arabidopsis thaliana HOM05M001943 ORTHO05M002039 1.8e-43 179.1 112 77.7
Pp3c15_18090 Physcomitrium patens HOM05M001943 ORTHO05M002039 3.0e-43 178.3 140 62.9
SMO239G0187 Selaginella moellendorffii HOM05M001943 ORTHO05M002039 3.0e-43 178.3 115 70.4
TRIDC2AG039580 Triticum dicoccoides HOM05M001943 ORTHO05M002039 3.0e-43 178.3 130 66.9
SMO146G0365 Selaginella moellendorffii HOM05M001943 ORTHO05M002039 5.1e-43 177.6 127 66.1
Glyma.16G083500 Glycine max HOM05M001943 ORTHO05M002039 6.7e-43 177.2 102 78.4
CALSI_Maker00028529 Calamus simplicifolius HOM05M001943 ORTHO05M002039 4.3e-42 174.5 136 66.9
Glyma.03G089400 Glycine max HOM05M001943 ORTHO05M002039 5.6e-42 174.1 102 77.5
HPP92_022222 Vanilla planifolia HOM05M001943 ORTHO05M002039 7.4e-42 173.7 118 70.3
Zjn_sc00056.1.g02300.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M001943 ORTHO05M002039 9.6e-42 173.3 130 62.3
TraesCS2A03G0680300 Triticum aestivum HOM05M001943 ORTHO05M002039 2.1e-41 172.2 130 64.6
TRITD2Av1G160930 Triticum turgidum HOM05M001943 ORTHO05M002039 2.1e-41 172.2 130 64.6
Zosma05g02000 Zostera marina HOM05M001943 ORTHO05M002039 2.1e-41 172.2 109 78.0
EJB05_38744 Eragrostis curvula HOM05M001943 ORTHO05M002039 3.7e-41 171.4 102 72.5
SEGI_33888 Sequoiadendron giganteum HOM05M001943 ORTHO05M002039 3.7e-41 171.4 122 66.4
Dexi7A01G0003130 Digitaria exilis HOM05M001943 ORTHO05M002039 4.8e-41 171.0 130 65.4
Sspon.05G0007060-2B Saccharum spontaneum HOM05M001943 ORTHO05M002039 4.8e-41 171.0 116 67.2
Sspon.05G0007060-3C Saccharum spontaneum HOM05M001943 ORTHO05M002039 4.8e-41 171.0 116 67.2
Sspon.05G0007060-4D Saccharum spontaneum HOM05M001943 ORTHO05M002039 4.8e-41 171.0 116 67.2
GWHGAORA062323 Cenchrus purpureus HOM05M001943 ORTHO05M002039 1.8e-40 169.1 125 63.2
Misin11G143000 Miscanthus sinensis HOM05M001943 ORTHO05M002039 3.1e-40 168.3 116 66.4
TRIDC2AG055280 Triticum dicoccoides HOM05M001943 ORTHO05M002039 4.0e-40 167.9 108 68.5
Bradi5g15580 Brachypodium distachyon HOM05M001943 ORTHO05M002039 5.3e-40 167.5 125 63.2
Dexi7B01G0013350 Digitaria exilis HOM05M001943 ORTHO05M002039 5.3e-40 167.5 129 64.3
Pp3c9_22140 Physcomitrium patens HOM05M001943 ORTHO05M002039 5.3e-40 167.5 103 72.8
Seita.7G166200 Setaria italica HOM05M001943 ORTHO05M002039 5.3e-40 167.5 132 62.1
Sevir.7G175300 Setaria viridis HOM05M001943 ORTHO05M002039 5.3e-40 167.5 132 62.1
Zm00001eb426620 Zea mays B73 HOM05M001943 ORTHO05M002039 5.3e-40 167.5 119 64.7
Zm00007a00047952 Zea mays B104 HOM05M001943 ORTHO05M002039 5.3e-40 167.5 119 64.7
OsKitaake04g196400 Oryza sativa Kitaake HOM05M001943 ORTHO05M002039 6.9e-40 167.2 109 68.8
OsR498G0408890900.01 Oryza sativa ssp. indica HOM05M001943 ORTHO05M002039 6.9e-40 167.2 109 68.8
Os04g0515400 Oryza sativa ssp. japonica HOM05M001943 ORTHO05M002039 6.9e-40 167.2 109 68.8
GWHGAORA022283 Cenchrus purpureus HOM05M001943 ORTHO05M002039 9.0e-40 166.8 114 67.5
Ma05_g14460 Musa acuminata HOM05M001943 ORTHO05M002039 9.0e-40 166.8 112 67.9
Sspon.05G0007060-1A Saccharum spontaneum HOM05M001943 ORTHO05M002039 9.0e-40 166.8 112 67.0
TraesCS2B03G1019600 Triticum aestivum HOM05M001943 ORTHO05M002039 9.0e-40 166.8 108 67.6
TRIDC2BG058050 Triticum dicoccoides HOM05M001943 ORTHO05M002039 9.0e-40 166.8 108 67.6
TRITD2Bv1G188820 Triticum turgidum HOM05M001943 ORTHO05M002039 9.0e-40 166.8 108 67.6
MBI07_g31093_MAGBIO Magnolia biondii HOM05M001943 ORTHO05M002039 1.2e-39 166.4 120 61.7
Zosma04g01230 Zostera marina HOM05M001943 ORTHO05M002039 1.2e-39 166.4 116 69.8
CALSI_Maker00047756 Calamus simplicifolius HOM05M001943 ORTHO05M002039 1.5e-39 166.0 109 71.6
Ot_Chr6_g12104 Oropetium thomaeum HOM05M001943 ORTHO05M002039 1.5e-39 166.0 125 63.2
Sobic.006G147200 Sorghum bicolor HOM05M001943 ORTHO05M002039 1.5e-39 166.0 111 66.7
OB04G25770 Oryza brachyantha HOM05M001943 ORTHO05M002039 2.0e-39 165.6 102 70.6
PH02Gene41810 Phyllostachys edulis HOM05M001943 ORTHO05M002039 2.0e-39 165.6 119 63.0
Potri.010G069700 Populus trichocarpa HOM05M001943 ORTHO05M002039 2.6e-39 165.2 106 68.9
V3.Lp_chr2_0G17948 Lolium perenne HOM05M001943 ORTHO05M002039 3.4e-39 164.9 119 64.7
Potri.008G168700 Populus trichocarpa HOM05M001943 ORTHO05M002039 3.4e-39 164.9 106 67.9
TraesCS2A03G0927200 Triticum aestivum HOM05M001943 ORTHO05M002039 3.4e-39 164.9 108 67.6
Asa0G01567 Allium sativum HOM05M001943 ORTHO05M002039 4.5e-39 164.5 102 75.5
p5.00_sc00071_p0080 Elaeis guineensis HOM05M001943 ORTHO05M002039 4.5e-39 164.5 109 68.8
SEGI_13188 Sequoiadendron giganteum HOM05M001943 ORTHO05M002039 4.5e-39 164.5 119 66.4
Ma04_g35290 Musa acuminata HOM05M001943 ORTHO05M002039 5.8e-39 164.1 121 62.8
GWHGAZTO030474 Oryza alta HOM05M001943 ORTHO05M002039 5.8e-39 164.1 102 70.6
Aco007747 Ananas comosus HOM05M001943 ORTHO05M002039 7.6e-39 163.7 113 66.4
Dexi7A01G0012590 Digitaria exilis HOM05M001943 ORTHO05M002039 7.6e-39 163.7 115 66.1
Misin12G148300 Miscanthus sinensis HOM05M001943 ORTHO05M002039 7.6e-39 163.7 113 66.4
GWHGASIY009942 Secale cereale HOM05M001943 ORTHO05M002039 1.7e-38 162.5 122 62.3
SEGI_07141 Sequoiadendron giganteum HOM05M001943 ORTHO05M002039 1.7e-38 162.5 118 66.1
AET2Gv20854100 Aegilops tauschii HOM05M001943 ORTHO05M002039 2.2e-38 162.2 102 68.6
V3.Lp_chr2_0G14120 Lolium perenne HOM05M001943 ORTHO05M002039 2.2e-38 162.2 93 77.4
Spipo16G0050700 Spirodela polyrhiza HOM05M001943 ORTHO05M002039 2.2e-38 162.2 106 67.9
TraesCS2D03G0867000 Triticum aestivum HOM05M001943 ORTHO05M002039 2.2e-38 162.2 102 68.6
CALSI_Maker00044207 Calamus simplicifolius HOM05M001943 ORTHO05M002039 2.9e-38 161.8 103 70.9
Ma04_g18650 Musa acuminata HOM05M001943 ORTHO05M002039 2.9e-38 161.8 102 70.6
Pahal.7G219800 Panicum hallii HOM05M001943 ORTHO05M002039 2.9e-38 161.8 135 60.7
Zm00001eb077570 Zea mays B73 HOM05M001943 ORTHO05M002039 2.9e-38 161.8 106 67.9
Zm00007a00002422 Zea mays B104 HOM05M001943 ORTHO05M002039 2.9e-38 161.8 106 67.9
p5.00_sc00356_p0014 Elaeis guineensis HOM05M001943 ORTHO05M002039 3.8e-38 161.4 109 67.0
PH02Gene39738 Phyllostachys edulis HOM05M001943 ORTHO05M002039 3.8e-38 161.4 100 70.0
CALSI_Maker00010179 Calamus simplicifolius HOM05M001943 ORTHO05M002039 4.9e-38 161.0 127 61.4
Horvu_MOREX_2H01G539700 Hordeum vulgare HOM05M001943 ORTHO05M002039 6.4e-38 160.6 123 61.0
GWHGAZTO080141 Oryza alta HOM05M001943 ORTHO05M002039 6.4e-38 160.6 102 69.6
evm.TU.AsparagusV1_04.73.V1.1 Asparagus officinalis HOM05M004244 ORTHO05M004787 8.4e-38 160.2 112 67.0
MBI10_g13799_MAGBIO Magnolia biondii HOM05M001943 ORTHO05M002039 8.4e-38 160.2 105 68.6
MBI16_g17094_MAGBIO Magnolia biondii HOM05M001943 ORTHO05M002039 8.4e-38 160.2 102 68.6
Ma04_g28550 Musa acuminata HOM05M001943 ORTHO05M002039 1.1e-37 159.8 126 60.3
HPP92_005132 Vanilla planifolia HOM05M001943 ORTHO05M002039 1.4e-37 159.5 102 69.6
Solyc09g090300.3 Solanum lycopersicum HOM05M001943 ORTHO05M002039 3.2e-37 158.3 102 67.6
ATR0111G003 Amborella trichopoda HOM05M001943 ORTHO05M002039 4.2e-37 157.9 103 69.9
CDE08G0909 Ceratophyllum demersum HOM05M001943 ORTHO05M002039 7.1e-37 157.1 118 60.2
Glyma.06G197800 Glycine max HOM05M001943 ORTHO05M002039 7.1e-37 157.1 115 63.5
Misin08G136200 Miscanthus sinensis HOM05M001943 ORTHO05M002039 1.6e-36 156.0 131 61.1
Glyma.05G023900 Glycine max HOM05M001943 ORTHO05M002039 2.1e-36 155.6 132 58.3
HPP92_020233 Vanilla planifolia HOM05M001943 ORTHO05M002039 4.6e-36 154.5 140 58.6
HPP92_022216 Vanilla planifolia HOM05M001943 ORTHO05M002039 6.0e-36 154.1 90 81.1
ATR0736G020 Amborella trichopoda HOM05M001943 ORTHO05M002039 7.9e-36 153.7 112 60.7
Solyc06g069640.3 Solanum lycopersicum HOM05M001943 ORTHO05M002039 7.9e-36 153.7 122 59.0
Glyma.05G101400 Glycine max HOM05M001943 ORTHO05M002039 1.1e-34 149.8 104 65.4
DDU689G0492 Dioscorea dumetorum HOM05M001943 ORTHO05M002039 1.5e-34 149.4 102 66.7
MCO01G219 Micromonas commoda HOM05M001943 ORTHO05M002039 3.7e-33 144.8 116 60.3
Os02g0479300 Oryza sativa ssp. japonica HOM05M001943 ORTHO05M002039 8.2e-33 143.7 90 76.7
Glyma.04G133300 Glycine max HOM05M001943 ORTHO05M002039 1.4e-32 142.9 108 62.0
DDU556G0141 Dioscorea dumetorum HOM05M001943 ORTHO05M002039 4.0e-32 141.4 197 44.2
Cre16.g686552 Chlamydomonas reinhardtii HOM05M001943 ORTHO05M002039 1.2e-31 139.8 113 55.8
PRCOL_00004568 Prasinoderma coloniale HOM05M001943 ORTHO05M002039 4.2e-29 131.3 115 53.0
evm.TU.AsparagusV1_01.2396.V1.1 Asparagus officinalis HOM05M001943 ORTHO05M002039 2.3e-27 125.6 73 82.2
GWHGAORA056856 Cenchrus purpureus HOM05M001943 ORTHO05M082923 2.3e-27 125.6 82 72.0
Zjn_sc00004.1.g04390.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M001943 ORTHO05M002039 1.6e-25 119.4 70 71.4
CDE05G3111 Ceratophyllum demersum HOM05M001943 ORTHO05M002039 3.7e-25 118.2 118 49.2
GWHGAORA022246 Cenchrus purpureus HOM05M001943 ORTHO05M002039 1.8e-24 115.9 79 67.1
evm.TU.AsparagusV1_10.901.V1.1 Asparagus officinalis HOM05M001943 ORTHO05M002039 5.9e-23 110.9 71 74.6
CALSI_Maker00047744 Calamus simplicifolius HOM05M001943 ORTHO05M002039 2.9e-14 82.0 53 67.9
DDU282G0009 Dioscorea dumetorum HOM05M001943 ORTHO05M002039 2.7e-12 75.5 58 58.6
DDU282G0021 Dioscorea dumetorum HOM05M001943 ORTHO05M002039 2.7e-12 75.5 58 58.6


User provided reference genes

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