Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g089750.1 Solanum lycopersicum HOM05M000011 ORTHO05M000254 8.4e-23 108.6 51 100.0
Solyc09g089730.3 Solanum lycopersicum HOM05M000011 ORTHO05M000254 1.8e-17 90.9 50 84.0
Solyc09g089760.1 Solanum lycopersicum HOM05M000011 ORTHO05M000254 3.1e-17 90.1 50 78.0
Solyc09g089680.4 Solanum lycopersicum HOM05M000011 ORTHO05M000254 6.9e-17 89.0 51 78.4
Solyc09g089710.3 Solanum lycopersicum HOM05M000011 ORTHO05M000254 6.9e-17 89.0 51 76.5
Solyc09g089580.4 Solanum lycopersicum HOM05M000011 ORTHO05M000254 2.2e-15 84.0 49 79.6
Solyc09g089690.3 Solanum lycopersicum HOM05M000011 ORTHO05M000254 2.2e-15 84.0 49 77.6
Solyc09g089720.3 Solanum lycopersicum HOM05M000011 ORTHO05M000254 1.1e-14 81.6 45 82.2
Solyc12g006380.2 Solanum lycopersicum HOM05M000011 ORTHO05M000254 1.2e-13 78.2 48 68.8
Solyc03g095900.4 Solanum lycopersicum HOM05M000011 ORTHO05M000254 2.7e-13 77.0 51 72.5
Solyc09g010040.3 Solanum lycopersicum HOM05M000011 ORTHO05M000254 4.6e-13 76.3 51 62.7
Solyc09g010020.2 Solanum lycopersicum HOM05M000011 ORTHO05M000254 2.3e-12 73.9 51 62.7
Glyma.15G257300 Glycine max HOM05M000011 ORTHO05M000254 3.0e-12 73.6 49 69.4
AT1G06645 Arabidopsis thaliana HOM05M000011 ORTHO05M000254 3.9e-12 73.2 50 62.0
Glyma.03G104300 Glycine max HOM05M000011 ORTHO05M000254 3.9e-12 73.2 49 67.3
MBI18_g41574_MAGBIO Magnolia biondii HOM05M000011 ORTHO05M000254 3.9e-12 73.2 50 60.0
Potri.010G073166 Populus trichocarpa HOM05M000011 ORTHO05M000254 3.9e-12 73.2 50 66.0
Solyc09g010000.4 Solanum lycopersicum HOM05M000011 ORTHO05M000254 8.7e-12 72.0 49 61.2
Potri.010G073300 Populus trichocarpa HOM05M000011 ORTHO05M000254 1.1e-11 71.6 50 68.0
MBI18_g29149_MAGBIO Magnolia biondii HOM05M000011 ORTHO05M000254 1.9e-11 70.9 50 58.0
Asa2G01810 Allium sativum HOM05M000011 ORTHO05M000254 2.5e-11 70.5 51 60.8
Aco006249 Ananas comosus HOM05M000011 ORTHO05M000254 2.5e-11 70.5 47 63.8
Asa2G03029 Allium sativum HOM05M000011 ORTHO05M000254 3.3e-11 70.1 51 58.8
Asa4G01510 Allium sativum HOM05M000011 ORTHO05M000254 3.3e-11 70.1 51 60.8
AT1G04350 Arabidopsis thaliana HOM05M000011 ORTHO05M000254 3.3e-11 70.1 50 64.0
Aco010438 Ananas comosus HOM05M000011 ORTHO05M000254 5.6e-11 69.3 47 61.7
AT1G06640 Arabidopsis thaliana HOM05M000011 ORTHO05M000254 5.6e-11 69.3 50 58.0
AT5G59540 Arabidopsis thaliana HOM05M000011 ORTHO05M000254 7.4e-11 68.9 50 62.0
Potri.008G165400 Populus trichocarpa HOM05M000011 ORTHO05M000254 9.6e-11 68.6 49 61.2
AT5G59530 Arabidopsis thaliana HOM05M000011 ORTHO05M000254 1.3e-10 68.2 49 61.2
CALSI_Maker00030259 Calamus simplicifolius HOM05M000011 ORTHO05M000254 1.3e-10 68.2 50 62.0
Potri.010G073100 Populus trichocarpa HOM05M000011 ORTHO05M000254 2.1e-10 67.4 50 60.0
Glyma.07G119700 Glycine max HOM05M000011 ORTHO05M000254 4.8e-10 66.2 49 65.3
Glyma.08G351800 Glycine max HOM05M000011 ORTHO05M000254 6.2e-10 65.9 49 59.2
Glyma.16G197700 Glycine max HOM05M000011 ORTHO05M000254 8.1e-10 65.5 49 55.1
Glyma.18G164100 Glycine max HOM05M000011 ORTHO05M000254 1.1e-09 65.1 49 59.2
AT1G06620 Arabidopsis thaliana HOM05M000011 ORTHO05M000254 1.8e-09 64.3 51 52.9
CALSI_Maker00044812 Calamus simplicifolius HOM05M000011 ORTHO05M000254 1.8e-09 64.3 50 60.0
Glyma.08G351866 Glycine max HOM05M000011 ORTHO05M000254 2.4e-09 63.9 47 59.6
MBI17_g07947_MAGBIO Magnolia biondii HOM05M000011 ORTHO05M000254 2.4e-09 63.9 49 51.0
Solyc06g053650.3 Solanum lycopersicum HOM05M000011 ORTHO05M000254 2.4e-09 63.9 49 59.2
AT2G30830 Arabidopsis thaliana HOM05M000011 ORTHO05M000254 5.3e-09 62.8 51 52.9
CALSI_Maker00010228 Calamus simplicifolius HOM05M000011 ORTHO05M000254 5.3e-09 62.8 50 54.0
CALSI_Maker00021657 Calamus simplicifolius HOM05M000011 ORTHO05M000254 5.3e-09 62.8 50 58.0
CALSI_Maker00023040 Calamus simplicifolius HOM05M000011 ORTHO05M000254 5.3e-09 62.8 50 58.0
CALSI_Maker00030262 Calamus simplicifolius HOM05M000011 ORTHO05M000254 5.3e-09 62.8 50 58.0
Glyma.09G144700 Glycine max HOM05M000011 ORTHO05M000254 5.3e-09 62.8 49 59.2
Asa2G03032 Allium sativum HOM05M000011 ORTHO05M000254 6.9e-09 62.4 51 54.9
evm.TU.AsparagusV1_10.1500.V1.1 Asparagus officinalis HOM05M000011 ORTHO05M000254 6.9e-09 62.4 49 55.1
Glyma.10G007700 Glycine max HOM05M000011 ORTHO05M000254 6.9e-09 62.4 50 60.0
MBI18_g41144_MAGBIO Magnolia biondii HOM05M000011 ORTHO05M000254 6.9e-09 62.4 50 52.0
Spipo11G0056900 Spirodela polyrhiza HOM05M000011 ORTHO05M000254 6.9e-09 62.4 45 55.6
Aco008885 Ananas comosus HOM05M000011 ORTHO05M000254 9.0e-09 62.0 47 51.1
Glyma.09G145400 Glycine max HOM05M000011 ORTHO05M000254 9.0e-09 62.0 49 59.2
CALSI_Maker00030256 Calamus simplicifolius HOM05M000011 ORTHO05M000254 1.2e-08 61.6 50 60.0
CALSI_Maker00033851 Calamus simplicifolius HOM05M000011 ORTHO05M000254 1.2e-08 61.6 50 56.0
CALSI_Maker00044819 Calamus simplicifolius HOM05M000011 ORTHO05M000254 1.2e-08 61.6 50 56.0
Potri.011G156200 Populus trichocarpa HOM05M000011 ORTHO05M000254 1.2e-08 61.6 49 57.1
Spipo11G0056800 Spirodela polyrhiza HOM05M000011 ORTHO05M000254 1.2e-08 61.6 47 57.4
evm.TU.AsparagusV1_10.1501.V1.1 Asparagus officinalis HOM05M000011 ORTHO05M000254 1.5e-08 61.2 50 52.0
MBI18_g28721_MAGBIO Magnolia biondii HOM05M000011 ORTHO05M000254 1.5e-08 61.2 50 52.0
CALSI_Maker00021658 Calamus simplicifolius HOM05M000011 ORTHO05M000254 2.0e-08 60.8 50 58.0
CALSI_Maker00021659 Calamus simplicifolius HOM05M000011 ORTHO05M000254 2.0e-08 60.8 50 58.0
Glyma.09G145200 Glycine max HOM05M000011 ORTHO05M000254 2.0e-08 60.8 49 59.2
GWHGASIY042170 Secale cereale HOM05M000011 ORTHO05M000254 2.6e-08 60.5 49 51.0
Potri.010G073232 Populus trichocarpa HOM05M000011 ORTHO05M000254 3.4e-08 60.1 50 54.0
p5.00_sc00085_p0044 Elaeis guineensis HOM05M000011 ORTHO05M000254 4.5e-08 59.7 46 54.3
TraesCS3B03G1260400 Triticum aestivum HOM05M000011 ORTHO05M000254 5.8e-08 59.3 49 51.0
TRITD3Bv1G252350 Triticum turgidum HOM05M000011 ORTHO05M000254 5.8e-08 59.3 49 51.0
AT2G30840 Arabidopsis thaliana HOM05M000011 ORTHO05M000254 7.6e-08 58.9 51 52.9
EJB05_48090 Eragrostis curvula HOM05M000011 ORTHO05M000254 7.6e-08 58.9 46 54.3
Glyma.13G121700 Glycine max HOM05M000011 ORTHO05M000254 7.6e-08 58.9 49 49.0
PH02Gene40459 Phyllostachys edulis HOM05M000011 ORTHO05M000254 7.6e-08 58.9 49 51.0
PH02Gene40460 Phyllostachys edulis HOM05M000011 ORTHO05M000254 7.6e-08 58.9 49 51.0
GWHGASIY006820 Secale cereale HOM05M000011 ORTHO05M000254 7.6e-08 58.9 49 51.0
GWHGASIY006821 Secale cereale HOM05M000011 ORTHO05M000254 7.6e-08 58.9 49 51.0
GWHGASIY034487 Secale cereale HOM05M000011 ORTHO05M000254 7.6e-08 58.9 49 51.0
GWHGASIY041692 Secale cereale HOM05M000011 ORTHO05M000254 7.6e-08 58.9 49 51.0
Aco008884 Ananas comosus HOM05M000011 ORTHO05M000254 9.9e-08 58.5 49 53.1
CALSI_Maker00044957 Calamus simplicifolius HOM05M000011 ORTHO05M000254 9.9e-08 58.5 50 56.0
Glyma.10G007500 Glycine max HOM05M000011 ORTHO05M000254 9.9e-08 58.5 50 52.0
V3.Lp_chr4_0G9262 Lolium perenne HOM05M000011 ORTHO05M000254 9.9e-08 58.5 49 51.0
Misin13G059300 Miscanthus sinensis HOM05M000011 ORTHO05M000254 9.9e-08 58.5 48 45.8
GWHGASIY034489 Secale cereale HOM05M000011 ORTHO05M000254 9.9e-08 58.5 49 49.0
GWHGASIY041693 Secale cereale HOM05M000011 ORTHO05M000254 1.3e-07 58.2 49 51.0
TraesCS2A03G0052500 Triticum aestivum HOM05M000011 ORTHO05M000254 1.3e-07 58.2 49 51.0
TraesCS2A03G0052600 Triticum aestivum HOM05M000011 ORTHO05M000254 1.3e-07 58.2 49 51.0
TraesCS2D03G0053900 Triticum aestivum HOM05M000011 ORTHO05M000254 1.3e-07 58.2 49 51.0
TRIDC2BG003040 Triticum dicoccoides HOM05M000011 ORTHO05M000254 1.3e-07 58.2 49 51.0
TRITD2Av1G006570 Triticum turgidum HOM05M000011 ORTHO05M000254 1.3e-07 58.2 49 51.0
Asa2G03031 Allium sativum HOM05M000011 ORTHO05M000254 1.7e-07 57.8 49 51.0
MBI18_g42388_MAGBIO Magnolia biondii HOM05M000011 ORTHO05M000254 1.7e-07 57.8 48 47.9
TraesCS3D03G1012100 Triticum aestivum HOM05M000011 ORTHO05M000254 1.7e-07 57.8 47 51.1
TRIDC3BG074410 Triticum dicoccoides HOM05M000011 ORTHO05M000254 1.7e-07 57.8 49 49.0
Potri.002G040700 Populus trichocarpa HOM05M000011 ORTHO05M000254 2.2e-07 57.4 48 50.0
Solyc09g057930.3 Solanum lycopersicum HOM05M000011 ORTHO05M250769 2.2e-07 57.4 32 81.2
AET2Gv20047500 Aegilops tauschii HOM05M000011 ORTHO05M000254 2.9e-07 57.0 49 49.0
Horvu_MOREX_2H01G025700 Hordeum vulgare HOM05M000011 ORTHO05M000254 2.9e-07 57.0 49 49.0
Seita.7G032100 Setaria italica HOM05M000011 ORTHO05M000254 2.9e-07 57.0 49 51.0
Sevir.7G018300 Setaria viridis HOM05M000011 ORTHO05M000254 2.9e-07 57.0 49 51.0
TraesCS2D03G0053100 Triticum aestivum HOM05M000011 ORTHO05M000254 2.9e-07 57.0 49 49.0
TRIDC2AG002640 Triticum dicoccoides HOM05M000011 ORTHO05M000254 2.9e-07 57.0 49 49.0
TRITD2Av1G006540 Triticum turgidum HOM05M000011 ORTHO05M000254 2.9e-07 57.0 49 49.0
Zjn_sc00125.1.g00220.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M000011 ORTHO05M000254 2.9e-07 57.0 51 54.9
CALSI_Maker00010232 Calamus simplicifolius HOM05M000011 ORTHO05M000254 3.8e-07 56.6 50 54.0
CALSI_Maker00040017 Calamus simplicifolius HOM05M000011 ORTHO05M000254 3.8e-07 56.6 50 54.0
Ot_Chr6_g26285 Oropetium thomaeum HOM05M000011 ORTHO05M000254 3.8e-07 56.6 51 52.9
Zm00007a00023447 Zea mays B104 HOM05M000011 ORTHO05M000254 3.8e-07 56.6 48 45.8
Zjn_sc00230.1.g00050.1.am.mk Zoysia japonica ssp. nagirizaki HOM05M000011 ORTHO05M000254 3.8e-07 56.6 49 51.0
Horvu_MOREX_2H01G026700 Hordeum vulgare HOM05M000011 ORTHO05M000254 4.9e-07 56.2 49 51.0
OsKitaake03g297200 Oryza sativa Kitaake HOM05M000011 ORTHO05M000254 4.9e-07 56.2 48 47.9
OsR498G0306837400.01 Oryza sativa ssp. indica HOM05M000011 ORTHO05M000254 4.9e-07 56.2 48 47.9
Os03g0690500 Oryza sativa ssp. japonica HOM05M000011 ORTHO05M000254 4.9e-07 56.2 48 47.9
HPP92_004972 Vanilla planifolia HOM05M000011 ORTHO05M000254 4.9e-07 56.2 50 48.0
AT2G25450 Arabidopsis thaliana HOM05M000011 ORTHO05M000254 6.4e-07 55.8 50 58.0
Horvu_MOREX_2H01G293900 Hordeum vulgare HOM05M000011 ORTHO05M000254 6.4e-07 55.8 48 47.9
MBI18_g28719_MAGBIO Magnolia biondii HOM05M000011 ORTHO05M000254 6.4e-07 55.8 48 50.0
Ot_Chr1_gn30703 Oropetium thomaeum HOM05M000011 ORTHO05M000254 6.4e-07 55.8 51 52.9
Sobic.007G070400 Sorghum bicolor HOM05M000011 ORTHO05M000254 6.4e-07 55.8 48 43.8
TRITD2Bv1G008240 Triticum turgidum HOM05M000011 ORTHO05M000254 6.4e-07 55.8 49 49.0
Bradi5g00830 Brachypodium distachyon HOM05M000011 ORTHO05M000254 8.4e-07 55.5 49 49.0
EJB05_47443 Eragrostis curvula HOM05M000011 ORTHO05M000254 8.4e-07 55.5 49 55.1
EJB05_47445 Eragrostis curvula HOM05M000011 ORTHO05M000254 8.4e-07 55.5 51 52.9
EJB05_47453 Eragrostis curvula HOM05M000011 ORTHO05M000254 8.4e-07 55.5 51 52.9
EJB05_56326 Eragrostis curvula HOM05M000011 ORTHO05M000254 8.4e-07 55.5 51 52.9
TraesCS2B03G0082200 Triticum aestivum HOM05M000011 ORTHO05M000254 8.4e-07 55.5 49 49.0
TRIDC2AG002730 Triticum dicoccoides HOM05M000011 ORTHO05M000254 8.4e-07 55.5 49 49.0
TRITD2Bv1G008510 Triticum turgidum HOM05M000011 ORTHO05M000254 8.4e-07 55.5 49 49.0
GWHGAORA003130 Cenchrus purpureus HOM05M000011 ORTHO05M000254 1.1e-06 55.1 50 48.0
Horvu_MOREX_2H01G026000 Hordeum vulgare HOM05M000011 ORTHO05M000254 1.1e-06 55.1 49 49.0
GWHGAZTO075986 Oryza alta HOM05M000011 ORTHO05M000254 1.1e-06 55.1 48 50.0
Asa1G02022 Allium sativum HOM05M000011 ORTHO05M000254 1.4e-06 54.7 51 43.1
CALSI_Maker00038662 Calamus simplicifolius HOM05M000011 ORTHO05M000254 1.4e-06 54.7 47 48.9
GWHGAORA044183 Cenchrus purpureus HOM05M000011 ORTHO05M000254 1.4e-06 54.7 51 51.0
OsKitaake04g031500 Oryza sativa Kitaake HOM05M000011 ORTHO05M000254 1.4e-06 54.7 51 51.0
OsR498G0407654100.01 Oryza sativa ssp. indica HOM05M000011 ORTHO05M000254 1.4e-06 54.7 51 51.0
Os04g0182200 Oryza sativa ssp. japonica HOM05M000011 ORTHO05M000254 1.4e-06 54.7 51 51.0
Solyc04g009860.4 Solanum lycopersicum HOM05M000011 ORTHO05M000254 1.4e-06 54.7 51 51.0
TRITD2Av1G006600 Triticum turgidum HOM05M000011 ORTHO05M000254 1.4e-06 54.7 49 51.0
Zjn_sc00010.1.g00480.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M000011 ORTHO05M000254 1.4e-06 54.7 53 50.9
Zjn_sc00015.1.g06360.1.sm.mk Zoysia japonica ssp. nagirizaki HOM05M000011 ORTHO05M000254 1.4e-06 54.7 46 41.3
DDU407G0405 Dioscorea dumetorum HOM05M000011 ORTHO05M000254 1.9e-06 54.3 50 44.0
V3.Lp_chr5_0G1556 Lolium perenne HOM05M000011 ORTHO05M000254 1.9e-06 54.3 49 49.0
TraesCS2A03G0054000 Triticum aestivum HOM05M000011 ORTHO05M000254 1.9e-06 54.3 49 46.9
GWHGAORA044159 Cenchrus purpureus HOM05M000011 ORTHO05M000254 2.4e-06 53.9 51 51.0
EJB05_35746 Eragrostis curvula HOM05M000011 ORTHO05M000254 2.4e-06 53.9 48 52.1
EJB05_35754 Eragrostis curvula HOM05M000011 ORTHO05M000254 2.4e-06 53.9 48 52.1
GWHGAZTO028104 Oryza alta HOM05M000011 ORTHO05M000254 2.4e-06 53.9 51 51.0
Sspon.06G0023170-1B Saccharum spontaneum HOM05M000011 ORTHO05M000254 2.4e-06 53.9 48 41.7
GWHGASIY041688 Secale cereale HOM05M000011 ORTHO05M000254 2.4e-06 53.9 49 46.9
TraesCS2A03G0053500 Triticum aestivum HOM05M000011 ORTHO05M000254 2.4e-06 53.9 49 49.0
AET2Gv20048900 Aegilops tauschii HOM05M000011 ORTHO05M000254 3.2e-06 53.5 49 49.0
DDU407G0053 Dioscorea dumetorum HOM05M000011 ORTHO05M000254 3.2e-06 53.5 50 44.0
EJB05_47452 Eragrostis curvula HOM05M000011 ORTHO05M000254 3.2e-06 53.5 51 49.0
OB04G12440 Oryza brachyantha HOM05M000011 ORTHO05M000254 3.2e-06 53.5 51 51.0
Sobic.006G028500 Sorghum bicolor HOM05M000011 ORTHO05M000254 3.2e-06 53.5 51 49.0
TraesCS2D03G0055200 Triticum aestivum HOM05M000011 ORTHO05M000254 3.2e-06 53.5 49 49.0
Misin11G025400 Miscanthus sinensis HOM05M000011 ORTHO05M000254 4.2e-06 53.1 51 49.0
Ot_Chr9_g14719 Oropetium thomaeum HOM05M000011 ORTHO05M000254 4.2e-06 53.1 46 47.8
ATR0602G030 Amborella trichopoda HOM05M000011 ORTHO05M000254 5.5e-06 52.8 48 52.1
DDU382G0007 Dioscorea dumetorum HOM05M000011 ORTHO05M000254 5.5e-06 52.8 50 42.0
DDU382G0016 Dioscorea dumetorum HOM05M000011 ORTHO05M000254 5.5e-06 52.8 50 42.0
DDU407G0150 Dioscorea dumetorum HOM05M000011 ORTHO05M000254 5.5e-06 52.8 50 44.0
DDU407G0220 Dioscorea dumetorum HOM05M000011 ORTHO05M000254 5.5e-06 52.8 50 44.0
DDU407G0251 Dioscorea dumetorum HOM05M000011 ORTHO05M000254 5.5e-06 52.8 50 42.0
DDU407G0434 Dioscorea dumetorum HOM05M000011 ORTHO05M000254 5.5e-06 52.8 50 42.0
DDU407G0469 Dioscorea dumetorum HOM05M000011 ORTHO05M000254 5.5e-06 52.8 50 44.0
DDU407G0488 Dioscorea dumetorum HOM05M000011 ORTHO05M000254 5.5e-06 52.8 50 44.0
Glyma.08G169900 Glycine max HOM05M000011 ORTHO05M000254 5.5e-06 52.8 48 52.1
GWHGAORA027530 Cenchrus purpureus HOM05M000011 ORTHO05M000254 7.1e-06 52.4 51 49.0
Glyma.09G144800 Glycine max HOM05M000011 ORTHO05M000254 7.1e-06 52.4 49 53.1
PH02Gene41697 Phyllostachys edulis HOM05M000011 ORTHO05M000254 7.1e-06 52.4 47 48.9
GWHGASIY041694 Secale cereale HOM05M000011 ORTHO05M000254 7.1e-06 52.4 39 56.4
Asa5G02169 Allium sativum HOM05M000011 ORTHO05M000254 9.3e-06 52.0 51 45.1
GWHGAORA027775 Cenchrus purpureus HOM05M000011 ORTHO05M000254 9.3e-06 52.0 51 49.0
Dexi9B01G0018510 Digitaria exilis HOM05M000011 ORTHO05M000254 9.3e-06 52.0 48 47.9
Horvu_MOREX_2H01G026800 Hordeum vulgare HOM05M000011 ORTHO05M000254 9.3e-06 52.0 49 46.9
MBI18_g41575_MAGBIO Magnolia biondii HOM05M000011 ORTHO05M000254 9.3e-06 52.0 40 52.5
Sobic.006G028300 Sorghum bicolor HOM05M000011 ORTHO05M000254 9.3e-06 52.0 51 49.0


User provided reference genes

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