Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g075830.3 Solanum lycopersicum HOM05M003483 ORTHO05M003976 0.0e+00 2364.3 1676 100.0
Potri.010G089700 Populus trichocarpa HOM05M003483 ORTHO05M003976 6.8e-262 907.9 1745 48.0
Potri.008G151200 Populus trichocarpa HOM05M003483 ORTHO05M003976 4.6e-242 842.0 1738 47.4
Glyma.10G249300 Glycine max HOM05M003483 ORTHO05M003976 5.8e-221 771.9 1708 45.7
Glyma.20G144400 Glycine max HOM05M003483 ORTHO05M003976 3.9e-217 759.2 1721 45.8
MBI04_g44890_MAGBIO Magnolia biondii HOM05M003483 ORTHO05M003976 7.2e-171 605.5 1800 40.3
AT3G22380 Arabidopsis thaliana HOM05M003483 ORTHO05M003976 3.4e-165 586.6 1528 42.1
p5.00_sc00127_p0014 Elaeis guineensis HOM05M003483 ORTHO05M003976 6.2e-122 443.0 1578 36.4
DDU893G0012 Dioscorea dumetorum HOM05M003483 ORTHO05M003976 1.4e-118 431.8 1767 35.3
CALSI_Maker00025334 Calamus simplicifolius HOM05M003483 ORTHO05M003976 1.3e-116 425.2 1370 38.7
p5.00_sc00127_p0013 Elaeis guineensis HOM05M003483 ORTHO05M003976 6.6e-116 422.9 1770 39.7
CALSI_Maker00030428 Calamus simplicifolius HOM05M003483 ORTHO05M003976 2.3e-113 414.5 1499 37.7
Spipo2G0069300 Spirodela polyrhiza HOM05M003483 ORTHO05M003976 2.1e-109 401.4 1401 38.7
DDU273G0350 Dioscorea dumetorum HOM05M003483 ORTHO05M003976 3.6e-106 390.6 1799 34.3
CALSI_Maker00025332 Calamus simplicifolius HOM05M003483 ORTHO05M003976 4.4e-104 383.6 1494 36.9
CALSI_Maker00045525 Calamus simplicifolius HOM05M003483 ORTHO05M003976 1.3e-103 382.1 1380 34.9
HPP92_024476 Vanilla planifolia HOM05M003483 ORTHO05M003976 1.1e-102 379.0 1588 35.1
Potri.002G052300 Populus trichocarpa HOM05M003483 ORTHO05M003976 5.4e-102 376.7 1529 31.5
Ma05_g14670 Musa acuminata HOM05M003483 ORTHO05M003976 3.1e-97 360.9 1589 32.5
Potri.005G210200 Populus trichocarpa HOM05M003483 ORTHO05M003976 7.1e-94 349.7 1521 32.7
ATR0332G080 Amborella trichopoda HOM05M003483 ORTHO05M003976 6.0e-93 346.7 1324 33.3
Aco023791 Ananas comosus HOM05M003483 ORTHO05M003976 1.8e-89 335.1 1636 39.1
Spipo24G0015000 Spirodela polyrhiza HOM05M003483 ORTHO05M003976 6.9e-89 333.2 1275 35.1
Ma04_g27550 Musa acuminata HOM05M003483 ORTHO05M003976 1.2e-80 305.8 1579 31.1
Ma04_g27520 Musa acuminata HOM05M003483 ORTHO05M003976 2.6e-80 304.7 1410 31.3
evm.TU.AsparagusV1_03.2763.V1.1 Asparagus officinalis HOM05M003483 ORTHO05M003976 2.5e-78 298.1 1368 35.8
Asa5G01129 Allium sativum HOM05M003483 ORTHO05M003976 2.7e-77 294.7 1317 35.2
HPP92_006103 Vanilla planifolia HOM05M003483 ORTHO05M003976 4.5e-72 277.3 1395 30.0
Ma02_g14260 Musa acuminata HOM05M003483 ORTHO05M003976 1.1e-65 256.1 1597 32.1
HPP92_027912 Vanilla planifolia HOM05M003483 ORTHO05M003976 1.2e-64 252.7 821 36.4
GWHGAZTO044661 Oryza alta HOM05M003483 ORTHO05M003976 1.3e-63 249.2 1451 30.4
V3.Lp_chr2_0G6408 Lolium perenne HOM05M003483 ORTHO05M003976 5.0e-63 247.3 1164 29.6
Pahal.2G418200 Panicum hallii HOM05M003483 ORTHO05M003976 2.1e-61 241.9 1444 31.0
GWHGASIY007679 Secale cereale HOM05M003483 ORTHO05M003976 4.6e-61 240.7 1164 29.6
Bradi1g24100 Brachypodium distachyon HOM05M003483 ORTHO05M003976 7.9e-61 240.0 1169 30.2
OsR498G0714606400.01 Oryza sativa ssp. indica HOM05M003483 ORTHO05M003976 3.9e-60 237.7 1167 30.1
OsKitaake07g197800 Oryza sativa Kitaake HOM05M003483 ORTHO05M003976 5.1e-60 237.3 1167 30.0
TRIDC2BG029920 Triticum dicoccoides HOM05M003483 ORTHO05M003976 3.3e-59 234.6 1161 29.2
EJB05_11703 Eragrostis curvula HOM05M003483 ORTHO05M003976 7.4e-59 233.4 1470 29.3
Horvu_MOREX_2H01G258400 Hordeum vulgare HOM05M003483 ORTHO05M003976 7.4e-59 233.4 1167 29.3
PH02Gene06954 Phyllostachys edulis HOM05M003483 ORTHO05M003976 7.4e-59 233.4 1445 30.4
Sevir.2G371100 Setaria viridis HOM05M003483 ORTHO05M003976 9.7e-59 233.0 1441 31.5
PH02Gene41232 Phyllostachys edulis HOM05M003483 ORTHO05M003976 1.3e-58 232.6 1429 29.7
Dexi2A01G0030840 Digitaria exilis HOM05M003483 ORTHO05M003976 1.1e-57 229.6 1420 30.0
Seita.2G360200 Setaria italica HOM05M003483 ORTHO05M003976 1.4e-57 229.2 833 33.5
HPP92_024374 Vanilla planifolia HOM05M003483 ORTHO05M003976 1.8e-57 228.8 559 37.6
TRITD2Bv1G080000 Triticum turgidum HOM05M003483 ORTHO05M003976 2.4e-57 228.4 1161 29.3
Dexi2B01G0029640 Digitaria exilis HOM05M003483 ORTHO05M003976 2.0e-56 225.3 1437 29.5
EJB05_11717 Eragrostis curvula HOM05M003483 ORTHO05M003976 5.9e-56 223.8 1470 28.8
GWHGAZTO092174 Oryza alta HOM05M003483 ORTHO05M003976 1.3e-55 222.6 1439 29.7
CDE10G0571 Ceratophyllum demersum HOM05M003483 ORTHO05M003976 1.7e-55 222.2 1331 27.6
Zm00001eb107250 Zea mays B73 HOM05M003483 ORTHO05M003976 2.2e-55 221.9 1443 29.3
Zm00007a00016507 Zea mays B104 HOM05M003483 ORTHO05M003976 2.2e-55 221.9 1443 29.3
Ot_Chr7_g16591 Oropetium thomaeum HOM05M003483 ORTHO05M003976 5.0e-55 220.7 1420 29.4
TraesCS2A03G0412200 Triticum aestivum HOM05M003483 ORTHO05M003976 4.2e-54 217.6 1169 28.9
TRIDC2AG025470 Triticum dicoccoides HOM05M003483 ORTHO05M003976 4.2e-54 217.6 1169 28.9
OB07G25130 Oryza brachyantha HOM05M003483 ORTHO05M003976 2.1e-53 215.3 1431 28.4
Sobic.002G346200 Sorghum bicolor HOM05M003483 ORTHO05M003976 6.1e-53 213.8 1459 28.9
HPP92_024870 Vanilla planifolia HOM05M003483 ORTHO05M003976 7.9e-53 213.4 1536 27.0
Sspon.02G0004780-2B Saccharum spontaneum HOM05M003483 ORTHO05M003976 3.0e-52 211.5 1408 31.9
GWHGAORA049198 Cenchrus purpureus HOM05M003483 ORTHO05M003976 3.9e-52 211.1 1433 32.0
Zm00001eb324930 Zea mays B73 HOM05M003483 ORTHO05M003976 1.1e-51 209.5 1420 30.3
Zm00007a00001817 Zea mays B104 HOM05M003483 ORTHO05M003976 1.1e-51 209.5 1420 30.3
Misin03G319700 Miscanthus sinensis HOM05M003483 ORTHO05M003976 2.0e-51 208.8 1433 31.7
TraesCS2B03G0541900 Triticum aestivum HOM05M003483 ORTHO05M003976 9.7e-51 206.5 1161 28.5
TraesCS2D03G0430000 Triticum aestivum HOM05M003483 ORTHO05M003976 2.8e-50 204.9 1160 28.3
GWHGAORA006549 Cenchrus purpureus HOM05M003483 ORTHO05M003976 2.9e-47 194.9 1436 30.6
Spipo3G0096300 Spirodela polyrhiza HOM05M003483 ORTHO05M003976 6.5e-47 193.7 925 29.1
Glyma.02G146900 Glycine max HOM05M003483 ORTHO05M003976 8.5e-47 193.4 1328 26.3
Glyma.10G027000 Glycine max HOM05M003483 ORTHO05M003976 2.5e-46 191.8 1327 26.3
Sspon.02G0004780-2P Saccharum spontaneum HOM05M003483 ORTHO05M003976 2.1e-45 188.7 1428 30.7
TRITD2Av1G070640 Triticum turgidum HOM05M003483 ORTHO05M003976 2.7e-45 188.3 1167 26.8
Os07g0571100 Oryza sativa ssp. japonica HOM05M003483 ORTHO05M003976 2.8e-42 178.3 744 30.2
Zosma03g29620 Zostera marina HOM05M003483 ORTHO05M003976 4.5e-40 171.0 850 30.4
ATR0743G011 Amborella trichopoda HOM05M003483 ORTHO05M003976 1.4e-36 159.5 797 29.4
CDE10G0467 Ceratophyllum demersum HOM05M003483 ORTHO05M003976 2.6e-35 155.2 1255 24.9
Sspon.02G0004780-1A Saccharum spontaneum HOM05M003483 ORTHO05M003976 5.7e-35 154.1 789 30.9
CDE08G0117 Ceratophyllum demersum HOM05M003483 ORTHO05M003976 2.2e-34 152.1 835 28.9
HPP92_027911 Vanilla planifolia HOM05M003483 ORTHO05M003976 3.5e-32 144.8 549 37.9
Glyma.06G095800 Glycine max HOM05M003483 ORTHO05M003976 5.9e-32 144.1 137 56.9
Zjn_sc00008.1.g10490.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M003483 ORTHO05M003976 7.5e-27 127.1 858 30.4
AET2Gv20415500 Aegilops tauschii HOM05M003483 ORTHO05M003976 2.2e-26 125.6 600 28.0
AT3G63180 Arabidopsis thaliana HOM05M003483 ORTHO05M003976 5.4e-25 120.9 757 26.6
SEGI_33118 Sequoiadendron giganteum HOM05M010604 ORTHO05M013038 2.0e-24 119.0 925 26.7
Zjn_sc00001.1.g06240.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M003483 ORTHO05M003976 2.3e-20 105.5 540 30.6
MBI06_g41726_MAGBIO Magnolia biondii HOM05M003483 ORTHO05M003976 3.0e-20 105.1 115 53.0
MBI15_g05486_MAGBIO Magnolia biondii HOM05M003483 ORTHO05M003976 3.0e-20 105.1 115 53.0
Potri.003G029500 Populus trichocarpa HOM05M003483 ORTHO05M003976 3.0e-20 105.1 214 48.1
GWHGAORA006572 Cenchrus purpureus HOM05M003483 ORTHO05M003976 5.0e-15 87.8 1126 25.8
GWHGAORA049257 Cenchrus purpureus HOM05M003483 ORTHO05M003976 1.8e-12 79.3 378 31.2
CALSI_Maker00022440 Calamus simplicifolius HOM05M003483 ORTHO05M003976 1.5e-11 76.3 138 44.2
CALSI_Maker00018463 Calamus simplicifolius HOM05M003483 ORTHO05M003976 3.4e-11 75.1 186 38.7
CALSI_Maker00022386 Calamus simplicifolius HOM05M003483 ORTHO05M003976 3.7e-10 71.6 251 33.5
HPP92_024376 Vanilla planifolia HOM05M003483 ORTHO05M003976 1.6e-08 66.2 102 46.1
Zosma03g29610 Zostera marina HOM05M003483 ORTHO05M003976 4.3e-06 58.2 72 44.4


User provided reference genes

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