Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g055850.3 Solanum lycopersicum HOM05M005890 ORTHO05M007442 6.8e-30 132.5 64 100.0
Aco006549 Ananas comosus HOM05M005890 ORTHO05M007442 2.5e-16 87.4 54 83.3
evm.TU.AsparagusV1_05.3529.V1.1 Asparagus officinalis HOM05M005890 ORTHO05M007442 3.3e-16 87.0 54 83.3
p5.00_sc00005_p0251 Elaeis guineensis HOM05M005890 ORTHO05M007442 3.3e-16 87.0 54 81.5
Glyma.17G058700 Glycine max HOM05M005890 ORTHO05M007442 5.6e-16 86.3 53 77.4
Potri.006G075000 Populus trichocarpa HOM05M005890 ORTHO05M007442 5.6e-16 86.3 53 79.2
Zosma01g40290 Zostera marina HOM05M005890 ORTHO05M007442 7.3e-16 85.9 51 80.4
DDU424G0027 Dioscorea dumetorum HOM05M005890 ORTHO05M007442 9.5e-16 85.5 54 79.6
DDU427G0015 Dioscorea dumetorum HOM05M005890 ORTHO05M007442 9.5e-16 85.5 54 79.6
DDU908G0009 Dioscorea dumetorum HOM05M005890 ORTHO05M007442 9.5e-16 85.5 54 79.6
Glyma.13G101000 Glycine max HOM05M005890 ORTHO05M007442 1.6e-15 84.7 53 75.5
Misin07G058200 Miscanthus sinensis HOM05M005890 ORTHO05M007442 1.6e-15 84.7 51 80.4
Ma03_g29120 Musa acuminata HOM05M005890 ORTHO05M007442 1.6e-15 84.7 51 80.4
CALSI_Maker00014573 Calamus simplicifolius HOM05M005890 ORTHO05M007442 2.8e-15 84.0 54 79.6
MBI16_g05840_MAGBIO Magnolia biondii HOM05M005890 ORTHO05M007442 2.8e-15 84.0 50 80.0
AET6Gv20393600 Aegilops tauschii HOM05M005890 ORTHO05M007442 4.7e-15 83.2 51 78.4
GWHGAORA015540 Cenchrus purpureus HOM05M005890 ORTHO05M007442 4.7e-15 83.2 51 78.4
Dexi1A01G0006080 Digitaria exilis HOM05M005890 ORTHO05M007442 4.7e-15 83.2 51 78.4
Dexi1B01G0005780 Digitaria exilis HOM05M005890 ORTHO05M007442 4.7e-15 83.2 51 78.4
Horvu_MOREX_6H01G204600 Hordeum vulgare HOM05M005890 ORTHO05M007442 4.7e-15 83.2 51 78.4
PH02Gene26847 Phyllostachys edulis HOM05M005890 ORTHO05M007442 4.7e-15 83.2 51 78.4
Sspon.04G0028540-1B Saccharum spontaneum HOM05M005890 ORTHO05M007442 4.7e-15 83.2 51 78.4
Sspon.04G0028540-2C Saccharum spontaneum HOM05M005890 ORTHO05M007442 4.7e-15 83.2 51 78.4
Sspon.04G0028540-3D Saccharum spontaneum HOM05M005890 ORTHO05M007442 4.7e-15 83.2 51 78.4
GWHGASIY031466 Secale cereale HOM05M005890 ORTHO05M007442 4.7e-15 83.2 51 78.4
Seita.1G067700 Setaria italica HOM05M005890 ORTHO05M007442 4.7e-15 83.2 51 78.4
Sevir.1G066700 Setaria viridis HOM05M005890 ORTHO05M007442 4.7e-15 83.2 51 78.4
TraesCS6B03G0462500 Triticum aestivum HOM05M005890 ORTHO05M007442 4.7e-15 83.2 51 78.4
TraesCS6D03G0321200 Triticum aestivum HOM05M005890 ORTHO05M007442 4.7e-15 83.2 51 78.4
TRIDC6BG027240 Triticum dicoccoides HOM05M005890 ORTHO05M007442 4.7e-15 83.2 51 78.4
TRITD6Bv1G067830 Triticum turgidum HOM05M005890 ORTHO05M007442 4.7e-15 83.2 51 78.4
Zm00001eb206900 Zea mays B73 HOM05M005890 ORTHO05M007442 4.7e-15 83.2 51 78.4
Zm00007a00003153 Zea mays B104 HOM05M005890 ORTHO05M007442 4.7e-15 83.2 51 78.4
Zm00007a00047405 Zea mays B104 HOM05M005890 ORTHO05M007442 4.7e-15 83.2 51 78.4
Pahal.1G055600 Panicum hallii HOM05M005890 ORTHO05M007442 6.2e-15 82.8 51 78.4
V3.Lp_chr6_0G5118 Lolium perenne HOM05M005890 ORTHO05M007442 8.1e-15 82.4 51 76.5
ATR0626G368 Amborella trichopoda HOM05M005890 ORTHO05M007442 1.1e-14 82.0 51 78.4
Bradi3g05640 Brachypodium distachyon HOM05M005890 ORTHO05M007442 1.1e-14 82.0 51 76.5
EJB05_24560 Eragrostis curvula HOM05M005890 ORTHO05M007442 1.1e-14 82.0 51 76.5
EJB05_55188 Eragrostis curvula HOM05M005890 ORTHO05M007442 1.1e-14 82.0 51 76.5
Ot_Chr1_g18353 Oropetium thomaeum HOM05M005890 ORTHO05M007442 1.1e-14 82.0 51 76.5
OB02G15000 Oryza brachyantha HOM05M005890 ORTHO05M007442 1.1e-14 82.0 51 76.5
OsKitaake02g059800 Oryza sativa Kitaake HOM05M005890 ORTHO05M007442 1.1e-14 82.0 51 76.5
OsR498G0203073000.01 Oryza sativa ssp. indica HOM05M005890 ORTHO05M007442 1.1e-14 82.0 51 76.5
Os02g0175900 Oryza sativa ssp. japonica HOM05M005890 ORTHO05M007442 1.1e-14 82.0 51 76.5
TraesCS6A03G0372700 Triticum aestivum HOM05M005890 ORTHO05M007442 1.1e-14 82.0 51 76.5
TRIDC6AG021510 Triticum dicoccoides HOM05M005890 ORTHO05M007442 1.1e-14 82.0 51 76.5
TRITD6Av1G058510 Triticum turgidum HOM05M005890 ORTHO05M007442 1.1e-14 82.0 51 76.5
Zjn_sc00037.1.g03360.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M005890 ORTHO05M007442 1.1e-14 82.0 51 76.5
GWHGAORA058509 Cenchrus purpureus HOM05M005890 ORTHO05M007442 1.4e-14 81.6 51 76.5
Sobic.004G060600 Sorghum bicolor HOM05M005890 ORTHO05M007442 1.4e-14 81.6 51 76.5
Asa6G00159 Allium sativum HOM05M005890 ORTHO05M007442 1.8e-14 81.3 54 75.9
PH02Gene34099 Phyllostachys edulis HOM05M005890 ORTHO05M007442 1.8e-14 81.3 51 76.5
Misin08G057700 Miscanthus sinensis HOM05M005890 ORTHO05M007442 2.3e-14 80.9 51 76.5
CDE05G1079 Ceratophyllum demersum HOM05M005890 ORTHO05M007442 5.2e-14 79.7 51 76.5
CDE05G1404 Ceratophyllum demersum HOM05M005890 ORTHO05M007442 5.2e-14 79.7 51 76.5
GWHGAORA014793 Cenchrus purpureus HOM05M005890 ORTHO05M007442 1.2e-13 78.6 51 74.5
GWHGAZTO016784 Oryza alta HOM05M005890 ORTHO05M007442 1.2e-13 78.6 49 77.6
GWHGAZTO068524 Oryza alta HOM05M005890 ORTHO05M007442 1.2e-13 78.6 49 77.6
Zm00001eb233520 Zea mays B73 HOM05M005890 ORTHO05M007442 1.2e-13 78.6 49 77.6
Spipo5G0002400 Spirodela polyrhiza HOM05M005890 ORTHO05M007442 1.5e-13 78.2 51 72.5
AagrBONN_evm.TU.Sc2ySwM_228.1455 Anthoceros agrestis HOM05M005890 ORTHO05M007442 5.8e-13 76.3 51 68.6
CBR_g12030 Chara braunii HOM05M005890 ORTHO05M007442 1.3e-12 75.1 62 66.1
Mapoly0001s0081 Marchantia polymorpha HOM05M005890 ORTHO05M007442 1.3e-12 75.1 54 70.4
AT2G19270 Arabidopsis thaliana HOM05M005890 ORTHO05M007442 2.9e-12 73.9 51 70.6
SMO361G0453 Selaginella moellendorffii HOM05M005890 ORTHO05M012118 1.9e-11 71.2 48 68.8
Pp3c15_6280 Physcomitrium patens HOM05M005890 ORTHO05M007442 2.4e-11 70.9 51 70.6
HPP92_011644 Vanilla planifolia HOM05M005890 ORTHO05M007442 5.4e-11 69.7 45 73.3
Asa6G01776 Allium sativum HOM05M005890 ORTHO05M007442 3.1e-06 53.9 40 77.5


User provided reference genes

Program Settings