Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g015280.1 Solanum lycopersicum HOM05M006654 ORTHO05M007859 2.7e-85 317.8 150 100.0
GWHGASIY043549 Secale cereale HOM05M006654 ORTHO05M007859 9.6e-51 203.0 172 61.0
Pahal.8G178900 Panicum hallii HOM05M006654 ORTHO05M007859 4.5e-48 194.1 167 62.3
TRITD1Bv1G072700 Triticum turgidum HOM05M006654 ORTHO05M007859 3.8e-39 164.5 179 52.5
Ot_Un136_gn40186 Oropetium thomaeum HOM05M006654 ORTHO05M007859 5.5e-38 160.6 186 48.9
Ot_Un168_gn40589 Oropetium thomaeum HOM05M006654 ORTHO05M007859 5.5e-38 160.6 186 48.9
TraesCS2B03G1229300 Triticum aestivum HOM05M006654 ORTHO05M007859 1.6e-37 159.1 186 48.4
TraesCS3D03G0108300 Triticum aestivum HOM05M006654 ORTHO05M007859 1.6e-37 159.1 186 48.4
Bradi2g13109 Brachypodium distachyon HOM05M006654 ORTHO05M007859 2.7e-37 158.3 186 48.9
Pahal.6G065200 Panicum hallii HOM05M006654 ORTHO05M007859 6.0e-37 157.1 186 48.9
Seita.J020000 Setaria italica HOM05M006654 ORTHO05M007859 2.3e-36 155.2 172 55.8
TraesCS3B03G0445100 Triticum aestivum HOM05M006654 ORTHO05M007859 3.0e-36 154.8 176 51.7
TRIDC3BG000540 Triticum dicoccoides HOM05M006654 ORTHO05M007859 6.5e-31 137.1 102 67.6
Solyc00g500058.1 Solanum lycopersicum HOM05M006654 ORTHO05M007859 1.4e-30 136.0 103 68.0
Solyc00g500210.1 Solanum lycopersicum HOM05M006654 ORTHO05M007859 1.4e-30 136.0 103 68.0
Zm00007a00004163 Zea mays B104 HOM05M006654 ORTHO05M007859 1.9e-30 135.6 111 64.0
Zm00007a00042787 Zea mays B104 HOM05M006654 ORTHO05M007859 1.9e-30 135.6 111 64.0
TRIDC3AG043290 Triticum dicoccoides HOM05M006654 ORTHO05M007859 9.3e-30 133.3 121 59.5
ATCG00360 Arabidopsis thaliana HOM05M006654 ORTHO05M007859 1.2e-29 132.9 103 66.0
TRIDC7AG050720 Triticum dicoccoides HOM05M006654 ORTHO05M007859 1.8e-28 129.0 102 64.7
TRIDC1BG022790 Triticum dicoccoides HOM05M006654 ORTHO05M007859 2.3e-28 128.6 111 59.5
SEGI_24497 Sequoiadendron giganteum HOM05M006654 ORTHO05M007859 3.9e-28 127.9 186 43.0
TRIDC2AG034940 Triticum dicoccoides HOM05M006654 ORTHO05M007859 2.8e-26 121.7 117 57.3
MBI14_g12605_MAGBIO Magnolia biondii HOM05M006654 ORTHO05M007859 4.2e-22 107.8 148 43.9
Potri.013G141700 Populus trichocarpa HOM05M006654 ORTHO05M007859 4.2e-22 107.8 119 52.9
OsKitaake01g356300 Oryza sativa Kitaake HOM05M006654 ORTHO05M007859 3.6e-21 104.8 126 47.6
OsKitaake10g067950 Oryza sativa Kitaake HOM05M006654 ORTHO05M007859 3.6e-21 104.8 126 47.6
Solyc09g015340.3 Solanum lycopersicum HOM05M000863 ORTHO05M000689 2.3e-20 102.1 89 64.0
Bradi1g39232 Brachypodium distachyon HOM05M006654 ORTHO05M007859 3.9e-20 101.3 126 46.0
SMO086G0046 Selaginella moellendorffii HOM05M006654 ORTHO05M007859 1.5e-19 99.4 173 37.6
Solyc00g500145.1 Solanum lycopersicum HOM05M006654 ORTHO05M007859 2.2e-18 95.5 103 52.4
Solyc09g015320.3 Solanum lycopersicum HOM05M006654 ORTHO05M007859 4.1e-17 91.3 102 55.9
OB10G20260 Oryza brachyantha HOM05M006654 ORTHO05M007859 2.5e-14 82.0 42 90.5
Pahal.3G358800 Panicum hallii HOM05M006654 ORTHO05M007859 2.5e-14 82.0 42 90.5
Potri.003G065133 Populus trichocarpa HOM05M006654 ORTHO05M007859 2.5e-14 82.0 42 90.5
TRIDC6BG051250 Triticum dicoccoides HOM05M006654 ORTHO05M007859 2.5e-14 82.0 41 90.2
Zm00007a00004162 Zea mays B104 HOM05M000863 ORTHO05M000689 4.2e-14 81.3 78 59.0
AET5Gv20013900 Aegilops tauschii HOM05M006654 ORTHO05M007859 7.2e-14 80.5 42 90.5
TraesCS1D03G0436900 Triticum aestivum HOM05M006654 ORTHO05M007859 9.4e-14 80.1 41 90.2
AET1Gv20447000 Aegilops tauschii HOM05M006654 ORTHO05M007859 2.7e-13 78.6 41 87.8
Solyc00g500059.1 Solanum lycopersicum HOM05M006654 ORTHO05M007859 3.6e-13 78.2 41 90.2
Solyc00g500144.1 Solanum lycopersicum HOM05M006654 ORTHO05M007859 3.6e-13 78.2 41 90.2
Solyc00g500211.1 Solanum lycopersicum HOM05M006654 ORTHO05M007859 3.6e-13 78.2 41 90.2
Glyma.09G178600 Glycine max HOM05M006654 ORTHO05M007859 4.7e-13 77.8 42 83.3
Pahal.8G181550 Panicum hallii HOM05M006654 ORTHO05M007859 6.1e-13 77.4 68 55.9
AET1Gv20449300 Aegilops tauschii HOM05M006654 ORTHO05M007859 1.4e-12 76.3 50 72.0
Asa3G04444 Allium sativum HOM05M006654 ORTHO05M007859 1.8e-12 75.9 42 81.0
TRIDC5AG018340 Triticum dicoccoides HOM05M006654 ORTHO05M007859 3.9e-12 74.7 41 78.0
Zm00007a00012326 Zea mays B104 HOM05M006654 ORTHO05M007859 3.9e-12 74.7 41 85.4
TRIDC7AG002780 Triticum dicoccoides HOM05M006654 ORTHO05M007859 6.7e-12 73.9 40 82.5
TRIDC5BG018460 Triticum dicoccoides HOM05M006654 ORTHO05M007859 1.1e-11 73.2 40 85.0
AET0Gv20061100 Aegilops tauschii HOM05M006654 ORTHO05M007859 9.7e-11 70.1 42 76.2
OB04G11510 Oryza brachyantha HOM05M006654 ORTHO05M007859 9.7e-11 70.1 41 70.7
TRIDC4AG024060 Triticum dicoccoides HOM05M006654 ORTHO05M007859 9.7e-11 70.1 49 69.4
AET0Gv20025700 Aegilops tauschii HOM05M006654 ORTHO05M007859 1.7e-10 69.3 35 88.6
AET5Gv21047600 Aegilops tauschii HOM05M006654 ORTHO05M007859 1.7e-10 69.3 35 88.6
TRIDC7AG039320 Triticum dicoccoides HOM05M006654 ORTHO05M007859 2.2e-10 68.9 36 80.6
TRITD4Av1G094430 Triticum turgidum HOM05M006654 ORTHO05M007859 2.8e-10 68.6 49 67.3
GWHGAZTO007791 Oryza alta HOM05M000004 ORTHO05M000008 1.1e-09 66.6 85 44.7
Zm00007a00032332 Zea mays B104 HOM05M006654 ORTHO05M007859 7.0e-09 63.9 40 75.0
Glyma.01G201600 Glycine max HOM05M006654 ORTHO05M007859 1.2e-08 63.2 41 78.0
AET5Gv21101600 Aegilops tauschii HOM05M006654 ORTHO05M007859 1.6e-08 62.8 33 78.8
AET1Gv20469000 Aegilops tauschii HOM05M006654 ORTHO05M007859 1.7e-07 59.3 33 81.8
SEGI_12487 Sequoiadendron giganteum HOM05M006654 ORTHO05M007859 1.7e-07 59.3 38 71.1
SEGI_17366 Sequoiadendron giganteum HOM05M000524 ORTHO05M007859 1.7e-07 59.3 38 71.1
SEGI_18571 Sequoiadendron giganteum HOM05M006654 ORTHO05M007859 1.7e-07 59.3 38 71.1
SEGI_20476 Sequoiadendron giganteum HOM05M004052 ORTHO05M004849 1.7e-07 59.3 38 71.1
SEGI_40009 Sequoiadendron giganteum HOM05M004843 ORTHO05M006001 1.7e-07 59.3 38 71.1
SEGI_21477 Sequoiadendron giganteum HOM05M000524 ORTHO05M007859 1.1e-06 56.6 38 68.4
AET4Gv20538100 Aegilops tauschii HOM05M006654 ORTHO05M007859 1.5e-06 56.2 28 85.7
DDU125G0026 Dioscorea dumetorum HOM05M000863 ORTHO05M000689 7.2e-06 53.9 30 73.3
DDU125G0047 Dioscorea dumetorum HOM05M000863 ORTHO05M000689 7.2e-06 53.9 30 73.3
DDU581G0007 Dioscorea dumetorum HOM05M000863 ORTHO05M000689 7.2e-06 53.9 30 73.3
DDU643G0071 Dioscorea dumetorum HOM05M000863 ORTHO05M000689 7.2e-06 53.9 30 73.3


User provided reference genes

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