Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g009440.3 Solanum lycopersicum HOM05M004876 ORTHO05M005934 6.7e-31 136.0 70 100.0
CALSI_Maker00048223 Calamus simplicifolius HOM05M004876 ORTHO05M005934 7.7e-19 95.9 66 72.7
Glyma.03G195000 Glycine max HOM05M004876 ORTHO05M005934 1.7e-18 94.7 63 73.0
ATR0789G158 Amborella trichopoda HOM05M004876 ORTHO05M005934 6.5e-18 92.8 64 71.9
Aco012783 Ananas comosus HOM05M004876 ORTHO05M005934 8.5e-18 92.4 69 65.2
Glyma.19G194700 Glycine max HOM05M004876 ORTHO05M005934 8.5e-18 92.4 63 71.4
CDE02G3384 Ceratophyllum demersum HOM05M004876 ORTHO05M005934 1.1e-17 92.0 63 73.0
DDU556G0050 Dioscorea dumetorum HOM05M000344 ORTHO05M000278 1.5e-17 91.7 63 73.0
AT2G16710 Arabidopsis thaliana HOM05M004876 ORTHO05M005934 2.5e-17 90.9 61 68.9
Potri.010G238800 Populus trichocarpa HOM05M004876 ORTHO05M005934 3.2e-17 90.5 61 70.5
Spipo0G0003000 Spirodela polyrhiza HOM05M004876 ORTHO05M005934 4.2e-17 90.1 61 77.0
Potri.008G020400 Populus trichocarpa HOM05M004876 ORTHO05M005934 5.5e-17 89.7 61 70.5
CDE11G1238 Ceratophyllum demersum HOM05M004876 ORTHO05M084486 1.2e-16 88.6 57 75.4
ATR0789G023 Amborella trichopoda HOM05M004876 ORTHO05M005934 2.1e-16 87.8 62 67.7
CALSI_Maker00008685 Calamus simplicifolius HOM05M004876 ORTHO05M005934 2.1e-16 87.8 62 69.4
p5.00_sc00036_p0204 Elaeis guineensis HOM05M004876 ORTHO05M005934 3.6e-16 87.0 63 71.4
p5.00_sc00139_p0027 Elaeis guineensis HOM05M004876 ORTHO05M005934 4.7e-16 86.7 63 69.8
Dexi5B01G0010450 Digitaria exilis HOM05M004876 ORTHO05M005934 1.0e-15 85.5 63 71.4
Zm00001eb334200 Zea mays B73 HOM05M004876 ORTHO05M005934 1.0e-15 85.5 63 71.4
Zm00007a00039130 Zea mays B104 HOM05M004876 ORTHO05M005934 1.0e-15 85.5 63 71.4
AET4Gv20113300 Aegilops tauschii HOM05M004876 ORTHO05M005934 1.4e-15 85.1 63 65.1
Horvu_MOREX_4H01G055900 Hordeum vulgare HOM05M004876 ORTHO05M005934 1.4e-15 85.1 63 65.1
V3.Lp_chr3_0G2742 Lolium perenne HOM05M004876 ORTHO05M005934 1.4e-15 85.1 63 65.1
GWHGASIY018447 Secale cereale HOM05M004876 ORTHO05M005934 1.4e-15 85.1 63 65.1
TraesCS4D03G0099300 Triticum aestivum HOM05M004876 ORTHO05M005934 1.4e-15 85.1 63 65.1
Asa7G00507 Allium sativum HOM05M004876 ORTHO05M005934 1.8e-15 84.7 63 61.9
PH02Gene28722 Phyllostachys edulis HOM05M004876 ORTHO05M005934 1.8e-15 84.7 63 66.7
GWHGAORA033240 Cenchrus purpureus HOM05M004876 ORTHO05M005934 2.3e-15 84.3 63 69.8
Misin05G095900 Miscanthus sinensis HOM05M004876 ORTHO05M005934 2.3e-15 84.3 63 69.8
Ot_Chr3_g06865 Oropetium thomaeum HOM05M004876 ORTHO05M005934 2.3e-15 84.3 63 69.8
PH02Gene19635 Phyllostachys edulis HOM05M004876 ORTHO05M005934 2.3e-15 84.3 63 66.7
Zjn_sc00005.1.g08250.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M004876 ORTHO05M005934 2.3e-15 84.3 63 69.8
Zjn_sc00043.1.g01130.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M004876 ORTHO05M005934 2.3e-15 84.3 63 69.8
Asa3G02346 Allium sativum HOM05M004876 ORTHO05M005934 3.0e-15 84.0 63 61.9
Aco020570 Ananas comosus HOM05M004876 ORTHO05M005934 3.0e-15 84.0 63 66.7
GWHGAZTO015061 Oryza alta HOM05M004876 ORTHO05M005934 4.0e-15 83.6 63 65.1
OsKitaake12g130500 Oryza sativa Kitaake HOM05M004876 ORTHO05M005934 4.0e-15 83.6 63 65.1
OsR498G1221623000.01 Oryza sativa ssp. indica HOM05M004876 ORTHO05M005934 4.0e-15 83.6 63 65.1
Os12g0485500 Oryza sativa ssp. japonica HOM05M004876 ORTHO05M005934 4.0e-15 83.6 63 65.1
Pahal.9G149100 Panicum hallii HOM05M004876 ORTHO05M005934 4.0e-15 83.6 63 69.8
evm.TU.AsparagusV1_01.2721.V1.1 Asparagus officinalis HOM05M004876 ORTHO05M005934 5.2e-15 83.2 63 61.9
GWHGAORA041730 Cenchrus purpureus HOM05M004876 ORTHO05M005934 5.2e-15 83.2 63 68.3
PH02Gene27581 Phyllostachys edulis HOM05M004876 ORTHO05M005934 5.2e-15 83.2 63 66.7
Seita.5G069800 Setaria italica HOM05M004876 ORTHO05M005934 5.2e-15 83.2 63 68.3
Sevir.5G068600 Setaria viridis HOM05M004876 ORTHO05M005934 5.2e-15 83.2 63 68.3
Dexi5A01G0010130 Digitaria exilis HOM05M004876 ORTHO05M005934 6.8e-15 82.8 63 69.8
EJB05_32004 Eragrostis curvula HOM05M004876 ORTHO05M005934 6.8e-15 82.8 63 68.3
Ma10_g20630 Musa acuminata HOM05M004876 ORTHO05M005934 6.8e-15 82.8 63 65.1
OB12G20270 Oryza brachyantha HOM05M004876 ORTHO05M005934 6.8e-15 82.8 61 67.2
Sobic.003G105101 Sorghum bicolor HOM05M004876 ORTHO05M005934 6.8e-15 82.8 63 68.3
Ma08_g16260 Musa acuminata HOM05M004876 ORTHO05M005934 1.2e-14 82.0 63 63.5
Bradi4g07300 Brachypodium distachyon HOM05M004876 ORTHO05M005934 1.5e-14 81.6 63 61.9
GWHGAZTO066891 Oryza alta HOM05M004876 ORTHO05M005934 2.0e-14 81.3 63 63.5
Misin06G051700 Miscanthus sinensis HOM05M004876 ORTHO05M005934 2.6e-14 80.9 63 66.7
Zm00001eb126830 Zea mays B73 HOM05M004876 ORTHO05M005934 2.6e-14 80.9 63 66.7
Zm00007a00024404 Zea mays B104 HOM05M004876 ORTHO05M005934 2.6e-14 80.9 63 66.7
Zosma02g02070 Zostera marina HOM05M004876 ORTHO05M005934 4.4e-14 80.1 63 61.9
V3.Lp_chr5_0G5708 Lolium perenne HOM05M004876 ORTHO05M005934 5.7e-14 79.7 54 68.5
Pahal.5G440700 Panicum hallii HOM05M004876 ORTHO05M005934 5.7e-14 79.7 63 66.7
Zm00007a00050852 Zea mays B104 HOM05M004876 ORTHO05M005934 7.5e-14 79.3 63 68.3
Bradi2g00550 Brachypodium distachyon HOM05M004876 ORTHO05M005934 6.3e-13 76.3 63 60.3
Solyc11g006920.2 Solanum lycopersicum HOM05M004876 ORTHO05M005934 6.3e-13 76.3 47 72.3
GWHGAZTO052941 Oryza alta HOM05M004876 ORTHO05M005934 3.1e-12 73.9 48 70.8
OB01G10350 Oryza brachyantha HOM05M004876 ORTHO05M005934 3.1e-12 73.9 63 60.3
AagrBONN_evm.TU.Sc2ySwM_362.959 Anthoceros agrestis HOM05M004876 ORTHO05M005934 4.1e-12 73.6 63 60.3
Pp3c18_19580 Physcomitrium patens HOM05M004876 ORTHO05M005934 5.4e-12 73.2 62 56.5
CBR_g4764 Chara braunii HOM05M004876 ORTHO05M005934 1.6e-11 71.6 59 61.0
Mapoly0089s0049 Marchantia polymorpha HOM05M004876 ORTHO05M005934 2.0e-11 71.2 57 57.9
MCO14G517 Micromonas commoda HOM05M004876 ORTHO05M005934 1.3e-10 68.6 47 59.6
GWHGAZTO041590 Oryza alta HOM05M004876 ORTHO05M005934 1.7e-10 68.2 44 70.5
OsKitaake01g004400 Oryza sativa Kitaake HOM05M004876 ORTHO05M005934 2.9e-10 67.4 40 77.5
OsR498G0100021200.01 Oryza sativa ssp. indica HOM05M004876 ORTHO05M005934 2.9e-10 67.4 40 77.5
Os01g0105800 Oryza sativa ssp. japonica HOM05M004876 ORTHO05M005934 2.9e-10 67.4 40 77.5
AT2G36260 Arabidopsis thaliana HOM05M004876 ORTHO05M005934 3.8e-10 67.0 47 61.7
Cre09.g400775 Chlamydomonas reinhardtii HOM05M004876 ORTHO05M005934 1.9e-09 64.7 61 52.5
SMO147G0221 Selaginella moellendorffii HOM05M004876 ORTHO05M005934 2.1e-08 61.2 49 55.1
TRIDC4BG008510 Triticum dicoccoides HOM05M004876 ORTHO05M005934 2.3e-07 57.8 32 78.1
TRIDC4AG040690 Triticum dicoccoides HOM05M004876 ORTHO05M005934 2.6e-06 54.3 25 92.0


User provided reference genes

Program Settings