Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g028910.1 Solanum lycopersicum HOM05M000524 ORTHO05M002120 1.6e-120 435.3 210 100.0
Solyc00g500290.1 Solanum lycopersicum HOM05M000524 ORTHO05M002120 7.0e-108 393.3 209 91.9
Potri.013G140260 Populus trichocarpa HOM05M000524 ORTHO05M002120 4.1e-76 287.7 215 69.3
ATR0187G001 Amborella trichopoda HOM05M000524 ORTHO05M002120 1.3e-74 282.7 213 70.4
ATCG00170 Arabidopsis thaliana HOM05M000524 ORTHO05M002120 1.1e-73 279.6 213 68.5
Asa6G02662 Allium sativum HOM05M000524 ORTHO05M002120 1.3e-66 256.1 209 65.1
Pahal.3G359650 Panicum hallii HOM05M000524 ORTHO05M002120 1.3e-58 229.6 208 60.6
Sobic.003G169400 Sorghum bicolor HOM05M000524 ORTHO05M002120 1.5e-57 226.1 208 60.1
Zm00001eb314280 Zea mays B73 HOM05M000524 ORTHO05M002120 3.3e-57 224.9 208 60.1
Zm00001eb435270 Zea mays B73 HOM05M000524 ORTHO05M002120 3.3e-57 224.9 208 60.1
Zm00001eb435480 Zea mays B73 HOM05M000524 ORTHO05M002120 3.3e-57 224.9 208 60.1
Zm00001eb436830 Zea mays B73 HOM05M000524 ORTHO05M002120 3.3e-57 224.9 208 60.1
Zm00001eb437260 Zea mays B73 HOM05M000524 ORTHO05M002120 3.3e-57 224.9 208 60.1
GWHGAORA061386 Cenchrus purpureus HOM05M000524 ORTHO05M002120 5.6e-57 224.2 208 60.1
Bradi1g39195 Brachypodium distachyon HOM05M000524 ORTHO05M002120 4.5e-54 214.5 208 58.2
Asa4G06523 Allium sativum HOM05M000524 ORTHO05M002120 1.3e-53 213.0 158 69.0
TRITD2Av1G283000 Triticum turgidum HOM05M000524 ORTHO05M002120 1.3e-53 213.0 208 58.2
Bradi1g05728 Brachypodium distachyon HOM05M000524 ORTHO05M002120 2.9e-53 211.8 208 57.7
OsKitaake10g067800 Oryza sativa Kitaake HOM05M000524 ORTHO05M002120 3.2e-52 208.4 215 57.2
OsR498G0407986600.01 Oryza sativa ssp. indica HOM05M000524 ORTHO05M002120 3.2e-52 208.4 215 57.2
GWHGASIY019922 Secale cereale HOM05M000524 ORTHO05M002120 3.0e-42 175.3 206 50.0
OsR498G0510352500.01 Oryza sativa ssp. indica HOM05M000524 ORTHO05M002120 1.6e-35 152.9 116 65.5
Solyc00g500052.1 Solanum lycopersicum HOM05M000524 ORTHO05M002120 1.8e-34 149.4 161 55.9
Solyc00g500135.1 Solanum lycopersicum HOM05M000524 ORTHO05M002120 1.8e-34 149.4 161 55.9
Solyc00g500205.1 Solanum lycopersicum HOM05M000524 ORTHO05M002120 1.8e-34 149.4 161 55.9
Solyc00g500319.1 Solanum lycopersicum HOM05M000524 ORTHO05M002120 1.8e-34 149.4 161 55.9
Glyma.02G221400 Glycine max HOM05M000524 ORTHO05M002120 1.4e-26 123.2 95 66.3
Seita.J019100 Setaria italica HOM05M000524 ORTHO05M002120 5.1e-26 121.3 178 41.6
CDE07G0287 Ceratophyllum demersum HOM05M003927 ORTHO05M005207 8.8e-26 120.6 174 46.6
Solyc01g056330.2 Solanum lycopersicum HOM05M000524 ORTHO05M002120 2.0e-25 119.4 62 90.3
AET0Gv20085800 Aegilops tauschii HOM05M000524 ORTHO05M002120 1.1e-23 113.6 85 67.1
AET0Gv20064500 Aegilops tauschii HOM05M000524 ORTHO05M002120 4.1e-23 111.7 84 66.7
Solyc05g020010.1 Solanum lycopersicum HOM05M000863 ORTHO05M000689 3.5e-22 108.6 63 85.7
Aco021221 Ananas comosus HOM05M005077 ORTHO05M005758 7.7e-22 107.5 70 77.1
AET4Gv20044900 Aegilops tauschii HOM05M000524 ORTHO05M002120 2.9e-21 105.5 83 65.1
Asa6G05956 Allium sativum HOM05M000524 ORTHO05M003374 1.9e-20 102.8 60 85.0
DDU125G0024 Dioscorea dumetorum HOM05M000524 ORTHO05M003374 2.5e-20 102.4 60 83.3
DDU125G0041 Dioscorea dumetorum HOM05M000524 ORTHO05M003374 2.5e-20 102.4 60 83.3
DDU581G0009 Dioscorea dumetorum HOM05M000524 ORTHO05M003374 2.5e-20 102.4 60 83.3
DDU643G0061 Dioscorea dumetorum HOM05M000524 ORTHO05M003374 2.5e-20 102.4 60 83.3
DDU643G0142 Dioscorea dumetorum HOM05M000524 ORTHO05M003374 2.5e-20 102.4 60 83.3
DDU747G0011 Dioscorea dumetorum HOM05M000524 ORTHO05M003374 2.5e-20 102.4 60 83.3
Asa8G05844 Allium sativum HOM05M000524 ORTHO05M002120 3.2e-20 102.1 61 83.6
Aco021894 Ananas comosus HOM05M001860 ORTHO05M001856 4.7e-19 98.2 56 83.9
Zm00007a00030995 Zea mays B104 HOM05M000524 ORTHO05M002120 5.2e-18 94.7 58 75.9
Zm00007a00051737 Zea mays B104 HOM05M000524 ORTHO05M002120 5.2e-18 94.7 58 75.9
TRIDC4AG024150 Triticum dicoccoides HOM05M000524 ORTHO05M002120 8.8e-18 94.0 64 70.3
Zm00007a00029073 Zea mays B104 HOM05M000524 ORTHO05M002120 2.6e-17 92.4 58 74.1
Zm00007a00005212 Zea mays B104 HOM05M000524 ORTHO05M002120 4.4e-17 91.7 58 74.1
Zm00007a00029672 Zea mays B104 HOM05M000524 ORTHO05M002120 7.4e-17 90.9 58 72.4
Zosma70g00220 Zostera marina HOM05M000524 ORTHO05M002120 7.4e-17 90.9 62 75.8
Potri.019G027720 Populus trichocarpa HOM05M000524 ORTHO05M002120 2.2e-16 89.4 62 69.4
GWHGAZTO077924 Oryza alta HOM05M005751 ORTHO05M007871 4.8e-16 88.2 53 77.4
SMO086G0013 Selaginella moellendorffii HOM05M000524 ORTHO05M002120 1.3e-13 80.1 177 33.3
V3.Lp_chr1_0G14018 Lolium perenne HOM05M000524 ORTHO05M002120 1.7e-13 79.7 48 77.1
Zm00007a00032338 Zea mays B104 HOM05M000524 ORTHO05M002120 1.2e-06 57.0 37 73.0
OB01G25320 Oryza brachyantha HOM05M000524 ORTHO05M002120 2.0e-06 56.2 52 57.7
TRIDC5AG011170 Triticum dicoccoides HOM05M000524 ORTHO05M002120 2.0e-06 56.2 33 78.8


User provided reference genes

Program Settings