Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g052000.1 Solanum lycopersicum HOM05M000477 ORTHO05M017652 7.3e-101 369.8 184 100.0
Solyc07g052020.2 Solanum lycopersicum HOM05M000477 ORTHO05M006174 7.9e-55 216.9 168 66.1
Solyc07g051980.3 Solanum lycopersicum HOM05M000477 ORTHO05M006174 6.7e-54 213.8 169 66.9
Solyc07g051960.3 Solanum lycopersicum HOM05M000477 ORTHO05M006174 3.3e-53 211.5 169 66.9
Solyc07g051970.3 Solanum lycopersicum HOM05M000477 ORTHO05M006174 4.0e-51 204.5 169 64.5
Solyc05g044480.3 Solanum lycopersicum HOM05M000477 ORTHO05M006174 4.3e-37 157.9 169 49.7
Solyc07g052010.3 Solanum lycopersicum HOM05M000477 ORTHO05M251626 2.2e-36 155.6 145 59.3
Solyc10g049750.3 Solanum lycopersicum HOM05M000477 ORTHO05M006174 1.0e-33 146.7 149 53.0
Solyc07g052100.4 Solanum lycopersicum HOM05M000477 ORTHO05M006174 3.2e-32 141.7 160 49.4
Solyc05g044510.2 Solanum lycopersicum HOM05M000477 ORTHO05M006174 5.1e-30 134.4 128 55.5
Solyc07g041470.3 Solanum lycopersicum HOM05M000477 ORTHO05M017652 1.3e-28 129.8 154 48.1
CALSI_Maker00030319 Calamus simplicifolius HOM05M000477 ORTHO05M006174 4.1e-27 124.8 143 46.9
Glyma.13G309700 Glycine max HOM05M000477 ORTHO05M006174 1.5e-26 122.9 146 47.3
Ma09_g11170 Musa acuminata HOM05M000477 ORTHO05M006174 2.0e-26 122.5 139 48.2
Glyma.12G192700 Glycine max HOM05M000477 ORTHO05M006174 5.9e-26 120.9 128 48.4
ATR0794G059 Amborella trichopoda HOM05M000477 ORTHO05M006174 7.7e-26 120.6 169 39.6
SEGI_35829 Sequoiadendron giganteum HOM05M000477 ORTHO05M006174 1.7e-25 119.4 176 40.9
Potri.014G154600 Populus trichocarpa HOM05M000477 ORTHO05M006174 2.9e-25 118.6 168 42.9
Bradi1g26440 Brachypodium distachyon HOM05M000477 ORTHO05M006174 1.1e-24 116.7 139 48.9
Zm00001eb322510 Zea mays B73 HOM05M000477 ORTHO05M006174 3.2e-24 115.2 128 46.9
Zm00007a00002680 Zea mays B104 HOM05M000477 ORTHO05M006174 3.2e-24 115.2 128 46.9
MBI06_g35522_MAGBIO Magnolia biondii HOM05M000477 ORTHO05M006174 4.2e-24 114.8 183 38.8
Horvu_MOREX_2H01G313500 Hordeum vulgare HOM05M000477 ORTHO05M006174 1.2e-23 113.2 139 47.5
EJB05_12329 Eragrostis curvula HOM05M000477 ORTHO05M006174 1.6e-23 112.8 140 45.0
GWHGASIY008007 Secale cereale HOM05M000477 ORTHO05M006174 1.6e-23 112.8 139 46.8
EJB05_12356 Eragrostis curvula HOM05M000477 ORTHO05M006174 2.1e-23 112.5 140 45.0
Solyc07g041430.3 Solanum lycopersicum HOM05M000477 ORTHO05M017652 4.7e-23 111.3 127 47.2
Misin04G298400 Miscanthus sinensis HOM05M000477 ORTHO05M006174 6.1e-23 110.9 137 45.3
Sspon.02G0036560-3D Saccharum spontaneum HOM05M000477 ORTHO05M006174 6.1e-23 110.9 137 45.3
TraesCS2B03G0602100 Triticum aestivum HOM05M000477 ORTHO05M006174 6.1e-23 110.9 139 46.8
TRITD2Bv1G094690 Triticum turgidum HOM05M000477 ORTHO05M006174 6.1e-23 110.9 139 46.8
Misin03G276100 Miscanthus sinensis HOM05M000477 ORTHO05M006174 8.0e-23 110.5 137 46.0
Sspon.02G0036560-1B Saccharum spontaneum HOM05M000477 ORTHO05M006174 1.4e-22 109.8 137 44.5
Ot_Chr7_g13444 Oropetium thomaeum HOM05M000477 ORTHO05M006174 1.8e-22 109.4 128 47.7
HPP92_012413 Vanilla planifolia HOM05M000477 ORTHO05M006174 1.8e-22 109.4 144 42.4
ATR0794G062 Amborella trichopoda HOM05M000477 ORTHO05M017652 3.0e-22 108.6 142 44.4
Zjn_sc00001.1.g08850.1.sm.mkhc Zoysia japonica ssp. nagirizaki HOM05M000477 ORTHO05M006174 3.0e-22 108.6 128 45.3
CDE01G0808 Ceratophyllum demersum HOM05M000318 ORTHO05M000787 5.2e-22 107.8 166 39.8
AET2Gv20479400 Aegilops tauschii HOM05M000477 ORTHO05M006174 1.1e-21 106.7 137 43.8
TraesCS2D03G0487900 Triticum aestivum HOM05M000477 ORTHO05M006174 1.1e-21 106.7 137 43.8
Sobic.002G315100 Sorghum bicolor HOM05M000477 ORTHO05M006174 1.5e-21 106.3 137 43.8
PH02Gene12757 Phyllostachys edulis HOM05M000477 ORTHO05M006174 2.0e-21 105.9 128 46.1
TraesCS2A03G0483100 Triticum aestivum HOM05M000477 ORTHO05M006174 2.6e-21 105.5 139 44.6
TRIDC2AG030000 Triticum dicoccoides HOM05M000477 ORTHO05M006174 2.6e-21 105.5 139 44.6
Asa2G04381 Allium sativum HOM05M000477 ORTHO05M006174 9.7e-21 103.6 138 47.1
evm.TU.AsparagusV1_03.1174.V1.1 Asparagus officinalis HOM05M000477 ORTHO05M017652 9.7e-21 103.6 135 45.2
AT1G05120 Arabidopsis thaliana HOM05M000477 ORTHO05M006174 1.7e-20 102.8 165 37.0
Dexi2A01G0027990 Digitaria exilis HOM05M000477 ORTHO05M006174 2.8e-20 102.1 138 41.3
GWHGAZTO044134 Oryza alta HOM05M000477 ORTHO05M006174 3.7e-20 101.7 130 45.4
Pahal.2G386200 Panicum hallii HOM05M000477 ORTHO05M006174 4.8e-20 101.3 138 41.3
GWHGAORA049005 Cenchrus purpureus HOM05M000477 ORTHO05M006174 6.3e-20 100.9 137 41.6
V3.Lp_chr2_0G7952 Lolium perenne HOM05M000477 ORTHO05M006174 6.3e-20 100.9 128 45.3
Sevir.2G339900 Setaria viridis HOM05M000477 ORTHO05M006174 8.2e-20 100.5 139 41.7
GWHGAZTO091639 Oryza alta HOM05M000477 ORTHO05M006174 2.4e-19 99.0 128 45.3
Dexi2B01G0026600 Digitaria exilis HOM05M000477 ORTHO05M006174 3.1e-19 98.6 140 39.3
Mapoly0003s0201 Marchantia polymorpha HOM05M000477 ORTHO05M006174 3.1e-19 98.6 180 34.4
GWHGAORA006966 Cenchrus purpureus HOM05M000477 ORTHO05M006174 4.1e-19 98.2 137 41.6
SMO304G0076 Selaginella moellendorffii HOM05M000477 ORTHO05M006174 2.2e-17 92.4 137 38.7
AagrBONN_evm.TU.Sc2ySwM_117.3225 Anthoceros agrestis HOM05M000477 ORTHO05M006174 3.8e-17 91.7 128 39.8
Spipo1G0117100 Spirodela polyrhiza HOM05M000477 ORTHO05M006174 4.2e-16 88.2 147 37.4
Sspon.02G0036560-2C Saccharum spontaneum HOM05M000477 ORTHO05M006174 2.1e-15 85.9 104 45.2
AT1G02670 Arabidopsis thaliana HOM05M000477 ORTHO05M006174 6.1e-15 84.3 128 38.3
CBR_g24178 Chara braunii HOM05M000477 ORTHO05M006174 6.1e-15 84.3 177 33.3
CALSI_Maker00012133 Calamus simplicifolius HOM05M000477 ORTHO05M017652 1.8e-14 82.8 106 45.3
OsKitaake07g158200 Oryza sativa Kitaake HOM05M000477 ORTHO05M006174 1.2e-13 80.1 104 42.3
OB07G21790 Oryza brachyantha HOM05M000477 ORTHO05M006174 3.4e-13 78.6 107 43.9
TRITD2Av1G092330 Triticum turgidum HOM05M000477 ORTHO05M006174 9.1e-11 70.5 60 51.7
Sspon.02G0036560-1P Saccharum spontaneum HOM05M000477 ORTHO05M006174 1.2e-10 70.1 76 46.1
CDE05G3073 Ceratophyllum demersum HOM05M000477 ORTHO05M001417 4.5e-10 68.2 156 32.7
SMO250G0012 Selaginella moellendorffii HOM05M000477 ORTHO05M001417 1.0e-09 67.0 139 33.1
SMO259G0030 Selaginella moellendorffii HOM05M000477 ORTHO05M019042 1.0e-09 67.0 139 33.1
SEGI_10641 Sequoiadendron giganteum HOM05M000477 ORTHO05M001417 2.9e-09 65.5 160 34.4
CDE11G0864 Ceratophyllum demersum HOM05M000477 ORTHO05M001417 3.8e-09 65.1 156 31.4
GWHGAORA045039 Cenchrus purpureus HOM05M000477 ORTHO05M001417 1.5e-08 63.2 164 31.7
EJB05_16749 Eragrostis curvula HOM05M000477 ORTHO05M001417 1.5e-08 63.2 184 27.2
MCO07G278 Micromonas commoda HOM05M000477 ORTHO05M006174 2.5e-08 62.4 169 27.2
Zm00001eb369880 Zea mays B73 HOM05M000477 ORTHO05M001417 3.2e-08 62.0 180 27.8
Zm00007a00024922 Zea mays B104 HOM05M000477 ORTHO05M001417 3.2e-08 62.0 180 27.8
Ma11_g20380 Musa acuminata HOM05M000477 ORTHO05M003296 5.5e-08 61.2 123 33.3
Ot_Chr3_gn34390 Oropetium thomaeum HOM05M000477 ORTHO05M001417 5.5e-08 61.2 183 27.3
MBI03_g13450_MAGBIO Magnolia biondii HOM05M000477 ORTHO05M001417 7.2e-08 60.8 155 32.3
Mapoly0002s0276 Marchantia polymorpha HOM05M000477 ORTHO05M017787 7.2e-08 60.8 113 36.3
Potri.004G037700 Populus trichocarpa HOM05M000477 ORTHO05M001417 7.2e-08 60.8 166 30.7
Potri.011G046400 Populus trichocarpa HOM05M000477 ORTHO05M001417 7.2e-08 60.8 165 30.3
Asa1G02039 Allium sativum HOM05M000477 ORTHO05M003296 1.2e-07 60.1 112 35.7
Asa5G01226 Allium sativum HOM05M000477 ORTHO05M001417 1.2e-07 60.1 139 32.4
AagrBONN_evm.TU.Sc2ySwM_117.2677 Anthoceros agrestis HOM05M000477 ORTHO05M003296 1.6e-07 59.7 123 33.3
Bradi2g51727 Brachypodium distachyon HOM05M000477 ORTHO05M001417 1.6e-07 59.7 174 28.7
Sspon.03G0004590-1A Saccharum spontaneum HOM05M000477 ORTHO05M001417 1.6e-07 59.7 183 27.3
Sspon.03G0004590-1T Saccharum spontaneum HOM05M000477 ORTHO05M001417 1.6e-07 59.7 183 27.3
Sspon.03G0004590-2D Saccharum spontaneum HOM05M000477 ORTHO05M001417 1.6e-07 59.7 183 27.3
Aco010445 Ananas comosus HOM05M000477 ORTHO05M003296 2.1e-07 59.3 124 31.5
Dexi5B01G0029220 Digitaria exilis HOM05M000477 ORTHO05M001417 2.1e-07 59.3 183 26.8
Misin05G291800 Miscanthus sinensis HOM05M000477 ORTHO05M001417 2.1e-07 59.3 183 26.8
GWHGAORA021244 Cenchrus purpureus HOM05M000477 ORTHO05M001417 2.7e-07 58.9 145 30.3
GWHGAZTO045291 Oryza alta HOM05M000477 ORTHO05M005248 2.7e-07 58.9 112 33.9
PH02Gene45421 Phyllostachys edulis HOM05M000477 ORTHO05M005248 2.7e-07 58.9 126 33.3
Sobic.003G316500 Sorghum bicolor HOM05M000477 ORTHO05M001417 2.7e-07 58.9 183 26.8
Misin06G282300 Miscanthus sinensis HOM05M000477 ORTHO05M001417 3.6e-07 58.5 183 26.8
GWHGASIY016187 Secale cereale HOM05M000477 ORTHO05M001417 3.6e-07 58.5 181 27.1
V3.Lp_chr3_0G19326 Lolium perenne HOM05M000477 ORTHO05M001417 4.7e-07 58.2 193 27.5
PH02Gene35740 Phyllostachys edulis HOM05M000477 ORTHO05M005248 4.7e-07 58.2 112 33.9
ATR0618G138 Amborella trichopoda HOM05M000477 ORTHO05M001417 8.0e-07 57.4 180 25.6
CALSI_Maker00022291 Calamus simplicifolius HOM05M000477 ORTHO05M001417 8.0e-07 57.4 167 27.5
Glyma.03G124900 Glycine max HOM05M000477 ORTHO05M005248 8.0e-07 57.4 141 28.4
Horvu_MOREX_3H01G463700 Hordeum vulgare HOM05M000477 ORTHO05M001417 8.0e-07 57.4 181 26.5
PH02Gene17843 Phyllostachys edulis HOM05M000477 ORTHO05M001417 8.0e-07 57.4 181 28.2
PRCOL_00004562 Prasinoderma coloniale HOM05M000477 ORTHO05M006174 8.0e-07 57.4 128 30.5
AET3Gv20733200 Aegilops tauschii HOM05M000477 ORTHO05M001417 1.0e-06 57.0 181 26.0
Asa5G00175 Allium sativum HOM05M000477 ORTHO05M001417 1.0e-06 57.0 163 30.7
CALSI_Maker00010898 Calamus simplicifolius HOM05M000477 ORTHO05M001417 1.0e-06 57.0 167 29.3
Pahal.5G135200 Panicum hallii HOM05M000477 ORTHO05M001417 1.0e-06 57.0 183 25.7
Seita.5G339900 Setaria italica HOM05M000477 ORTHO05M001417 1.0e-06 57.0 183 26.2
Sevir.5G344200 Setaria viridis HOM05M000477 ORTHO05M001417 1.0e-06 57.0 183 26.2
TraesCS3A03G0771300 Triticum aestivum HOM05M000477 ORTHO05M001417 1.0e-06 57.0 181 26.0
TraesCS3B03G0885700 Triticum aestivum HOM05M000477 ORTHO05M001417 1.0e-06 57.0 181 26.0
TraesCS3D03G0713000 Triticum aestivum HOM05M000477 ORTHO05M001417 1.0e-06 57.0 181 26.0
TRIDC3AG046140 Triticum dicoccoides HOM05M000477 ORTHO05M001417 1.0e-06 57.0 181 26.0
TRITD3Bv1G179890 Triticum turgidum HOM05M000477 ORTHO05M001417 1.0e-06 57.0 181 26.0
Os07g0511500 Oryza sativa ssp. japonica HOM05M000477 ORTHO05M006174 1.4e-06 56.6 50 56.0
Potri.007G000700 Populus trichocarpa HOM05M000477 ORTHO05M001417 1.4e-06 56.6 161 28.0
Spipo7G0000700 Spirodela polyrhiza HOM05M000477 ORTHO05M001417 1.4e-06 56.6 161 28.0
TraesCS2B03G0415300 Triticum aestivum HOM05M000477 ORTHO05M005248 1.4e-06 56.6 118 31.4
TRIDC2BG021920 Triticum dicoccoides HOM05M000477 ORTHO05M005248 1.4e-06 56.6 118 31.4
TRITD2Bv1G055390 Triticum turgidum HOM05M000477 ORTHO05M005248 1.4e-06 56.6 118 31.4
GWHGAORA045026 Cenchrus purpureus HOM05M000477 ORTHO05M001417 1.8e-06 56.2 178 28.1
Glyma.10G288200 Glycine max HOM05M000477 ORTHO05M001417 1.8e-06 56.2 160 29.4
Glyma.13G243600 Glycine max HOM05M000477 ORTHO05M001417 1.8e-06 56.2 164 29.3
Ma01_g04200 Musa acuminata HOM05M000477 ORTHO05M001417 1.8e-06 56.2 168 27.4
PH02Gene24954 Phyllostachys edulis HOM05M000477 ORTHO05M001417 1.8e-06 56.2 167 28.7
GWHGASIY007054 Secale cereale HOM05M000477 ORTHO05M005248 1.8e-06 56.2 118 31.4
GWHGASIY007056 Secale cereale HOM05M000477 ORTHO05M005248 1.8e-06 56.2 118 31.4
TraesCS2A03G0296700 Triticum aestivum HOM05M000477 ORTHO05M005248 1.8e-06 56.2 118 31.4
TRIDC2AG018140 Triticum dicoccoides HOM05M000477 ORTHO05M005248 1.8e-06 56.2 118 31.4
TRITD2Av1G041230 Triticum turgidum HOM05M000477 ORTHO05M005248 1.8e-06 56.2 118 31.4
AET2Gv20295700 Aegilops tauschii HOM05M000477 ORTHO05M005248 2.3e-06 55.8 118 31.4
Glyma.20G100800 Glycine max HOM05M000477 ORTHO05M001417 2.3e-06 55.8 160 29.4
GWHGAZTO005355 Oryza alta HOM05M000477 ORTHO05M001417 2.3e-06 55.8 185 24.3
TraesCS2D03G0314800 Triticum aestivum HOM05M000477 ORTHO05M005248 2.3e-06 55.8 118 31.4
TRITD2Av1G017010 Triticum turgidum HOM05M000477 ORTHO05M003296 2.3e-06 55.8 114 32.5
TRITD3Av1G200610 Triticum turgidum HOM05M000477 ORTHO05M001417 2.3e-06 55.8 181 26.0
ATR0693G151 Amborella trichopoda HOM05M000477 ORTHO05M001417 3.0e-06 55.5 166 30.1
Bradi1g19820 Brachypodium distachyon HOM05M000477 ORTHO05M005248 3.0e-06 55.5 120 30.8
GWHGAZTO057701 Oryza alta HOM05M000477 ORTHO05M001417 3.0e-06 55.5 187 25.1
OsKitaake01g347800 Oryza sativa Kitaake HOM05M000477 ORTHO05M001417 3.0e-06 55.5 187 25.1
OsR498G0102097400.01 Oryza sativa ssp. indica HOM05M000477 ORTHO05M001417 3.0e-06 55.5 187 25.1
Os01g0779400 Oryza sativa ssp. japonica HOM05M000477 ORTHO05M001417 3.0e-06 55.5 187 25.1
Zjn_sc00009.1.g10020.1.am.mkhc Zoysia japonica ssp. nagirizaki HOM05M000477 ORTHO05M001417 3.0e-06 55.5 183 26.8
DDU655G0013 Dioscorea dumetorum HOM05M000477 ORTHO05M005248 4.0e-06 55.1 130 28.5
Horvu_MOREX_2H01G171400 Hordeum vulgare HOM05M000477 ORTHO05M005248 4.0e-06 55.1 118 31.4
Ot_Chr7_g10385 Oropetium thomaeum HOM05M000477 ORTHO05M005248 4.0e-06 55.1 117 29.9
Potri.016G034000 Populus trichocarpa HOM05M000477 ORTHO05M005248 4.0e-06 55.1 76 40.8
HPP92_004971 Vanilla planifolia HOM05M000477 ORTHO05M003296 4.0e-06 55.1 123 30.1
Cre11.g479300 Chlamydomonas reinhardtii HOM05M000477 ORTHO05M006174 5.2e-06 54.7 67 44.8
Glyma.07G192500 Glycine max HOM05M000477 ORTHO05M001417 5.2e-06 54.7 159 29.6
Pp3c6_21140 Physcomitrium patens HOM05M000477 ORTHO05M017787 5.2e-06 54.7 111 34.2
TRIDC3BG052270 Triticum dicoccoides HOM05M000477 ORTHO05M001417 5.2e-06 54.7 150 29.3
AagrBONN_evm.TU.Sc2ySwM_344.976 Anthoceros agrestis HOM05M000477 ORTHO05M017787 6.8e-06 54.3 115 32.2
GWHGAORA023854 Cenchrus purpureus HOM05M000477 ORTHO05M003296 6.8e-06 54.3 141 31.2
DDU521G0258 Dioscorea dumetorum HOM05M000477 ORTHO05M005248 6.8e-06 54.3 130 28.5
Glyma.15G070100 Glycine max HOM05M000477 ORTHO05M001417 6.8e-06 54.3 164 28.0
OB01G41930 Oryza brachyantha HOM05M000477 ORTHO05M001417 6.8e-06 54.3 190 27.4
AT1G11100 Arabidopsis thaliana HOM05M000477 ORTHO05M001417 8.8e-06 53.9 142 29.6
AT5G43530 Arabidopsis thaliana HOM05M000477 ORTHO05M003296 8.8e-06 53.9 133 33.1
OsKitaake07g248200 Oryza sativa Kitaake HOM05M000477 ORTHO05M005248 8.8e-06 53.9 110 34.5
Os07g0642400 Oryza sativa ssp. japonica HOM05M000477 ORTHO05M005248 8.8e-06 53.9 110 34.5
Potri.003G083400 Populus trichocarpa HOM05M000477 ORTHO05M003296 8.8e-06 53.9 122 32.8
SMO259G0046 Selaginella moellendorffii HOM05M000477 ORTHO05M001417 8.8e-06 53.9 173 28.9


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